BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00020636
         (2872 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27412.3| unnamed protein product [Vitis vinifera]             1111   0.0  
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1111   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1086   0.0  
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1082   0.0  
emb|CAC95022.1| mitochondrial RNA polymerase [Nicotiana tabacum]     1082   0.0  

>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score = 1111 bits (2874), Expect = 0.0
 Identities = 535/650 (82%), Positives = 591/650 (90%)
 Frame = -1

Query: 1987 VGSRLIELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLV 1808
            VGSRLIELL+++AYIQPP DQL DGPPDIRPAF HTL+TV K+ QK +RRYG+IECDPLV
Sbjct: 164  VGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLV 223

Query: 1807 RQGMERTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQ 1628
            R+G+E+TARHMVIPYMPML+PP  W GYDKGAYLFLPSYVMR HGA+QQREA+K+ P+K 
Sbjct: 224  RKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKA 283

Query: 1627 IGPVFEALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELR 1448
            + P FEAL+TLG+ KWR+NKR+LGV+DR+WASGG+ A LV+R+DVPLPEEP  EDEAE+R
Sbjct: 284  LEPAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIR 343

Query: 1447 NWRWXXXXXXKENSERHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNH 1268
             W+W      KENSERHS RCD+ELKLAVARKMK EDGF+YPHNLDFRGRAYPMHPYLNH
Sbjct: 344  KWKWKVRSVKKENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNH 403

Query: 1267 LGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFD 1088
            LGSDLCRGILEFAEGRPLGKSGLRWLKIHLAN++ AGGVDKLSYEGR+AFTE++L++IFD
Sbjct: 404  LGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVY-AGGVDKLSYEGRVAFTENHLEDIFD 462

Query: 1087 SADRPLEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAA 908
            SADRPLEG +WWL AEDPFQCLA C+NLSEALRSSSPETTISH+PVHQDGSCNGLQHYAA
Sbjct: 463  SADRPLEGRRWWLSAEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAA 522

Query: 907  LGRDKLGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWV 728
            LGRDKLGAAAVNLVAGEKPADVYSGIA RV +IMQ DAQKDPA + N LRA+LLI +  V
Sbjct: 523  LGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQ--V 580

Query: 727  NRKLVKQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMF 548
            +RKLVKQTVMTSVYGVTYIGARDQIK+RLKER    +E E F  +CYAAK TLTALGEMF
Sbjct: 581  DRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMF 640

Query: 547  EAARSIMSWLSDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETD 368
            EAARSIMSWL DCAKVIA +NHPVRW TPLGLPVVQPYRKLGRHLIKTSLQVL+LQRETD
Sbjct: 641  EAARSIMSWLGDCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETD 700

Query: 367  KVMVKRQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILR 188
            KVMVKRQ+TAFPPNFVHSLDGSHMMMTA+AC++AGLNFAGVHDSYWTHACDVDEMNRILR
Sbjct: 701  KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILR 760

Query: 187  EKFVELYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 38
            EKFVELY  PILENLL  FQ+SFPTL FPPLPERGDF+L+EVLES YFFN
Sbjct: 761  EKFVELYGMPILENLLEGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 810



 Score =  194 bits (494), Expect = 9e-47
 Identities = 106/182 (58%), Positives = 119/182 (65%)
 Frame = -3

Query: 2648 MCEQKLAPNLPYMKSLFLGWFEPLRDSIASEQELCKKGKSRAAYAPYFDQLPAEMMAVIT 2469
            MCEQKLAPNLPY+KSLFLGWFEPLRD IA+EQ+LCK+GK+RAAYAPYFD LPA+MMAVIT
Sbjct: 1    MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60

Query: 2468 MHKLMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEHEVRIYIFLEK 2289
            MHKLMG                                         IEHEVRI  F+EK
Sbjct: 61   MHKLMG------------------LLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEK 102

Query: 2288 TKKKASQDMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQ 2109
            TKKK++     +GG  +   KEQ KLR KV+ LMKKQKL+QVR IVK QDD KPWGQDA 
Sbjct: 103  TKKKSASSNNPDGGS-NPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDAN 161

Query: 2108 AK 2103
             K
Sbjct: 162  VK 163


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score = 1111 bits (2874), Expect = 0.0
 Identities = 535/650 (82%), Positives = 591/650 (90%)
 Frame = -1

Query: 1987 VGSRLIELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLV 1808
            VGSRLIELL+++AYIQPP DQL DGPPDIRPAF HTL+TV K+ QK +RRYG+IECDPLV
Sbjct: 332  VGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLV 391

Query: 1807 RQGMERTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQ 1628
            R+G+E+TARHMVIPYMPML+PP  W GYDKGAYLFLPSYVMR HGA+QQREA+K+ P+K 
Sbjct: 392  RKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKA 451

Query: 1627 IGPVFEALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELR 1448
            + P FEAL+TLG+ KWR+NKR+LGV+DR+WASGG+ A LV+R+DVPLPEEP  EDEAE+R
Sbjct: 452  LEPAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIR 511

Query: 1447 NWRWXXXXXXKENSERHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNH 1268
             W+W      KENSERHS RCD+ELKLAVARKMK EDGF+YPHNLDFRGRAYPMHPYLNH
Sbjct: 512  KWKWKVRSVKKENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNH 571

Query: 1267 LGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFD 1088
            LGSDLCRGILEFAEGRPLGKSGLRWLKIHLAN++ AGGVDKLSYEGR+AFTE++L++IFD
Sbjct: 572  LGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVY-AGGVDKLSYEGRVAFTENHLEDIFD 630

Query: 1087 SADRPLEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAA 908
            SADRPLEG +WWL AEDPFQCLA C+NLSEALRSSSPETTISH+PVHQDGSCNGLQHYAA
Sbjct: 631  SADRPLEGRRWWLSAEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAA 690

Query: 907  LGRDKLGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWV 728
            LGRDKLGAAAVNLVAGEKPADVYSGIA RV +IMQ DAQKDPA + N LRA+LLI +  V
Sbjct: 691  LGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQ--V 748

Query: 727  NRKLVKQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMF 548
            +RKLVKQTVMTSVYGVTYIGARDQIK+RLKER    +E E F  +CYAAK TLTALGEMF
Sbjct: 749  DRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMF 808

Query: 547  EAARSIMSWLSDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETD 368
            EAARSIMSWL DCAKVIA +NHPVRW TPLGLPVVQPYRKLGRHLIKTSLQVL+LQRETD
Sbjct: 809  EAARSIMSWLGDCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETD 868

Query: 367  KVMVKRQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILR 188
            KVMVKRQ+TAFPPNFVHSLDGSHMMMTA+AC++AGLNFAGVHDSYWTHACDVDEMNRILR
Sbjct: 869  KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILR 928

Query: 187  EKFVELYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 38
            EKFVELY  PILENLL  FQ+SFPTL FPPLPERGDF+L+EVLES YFFN
Sbjct: 929  EKFVELYGMPILENLLEGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 978



 Score =  271 bits (693), Expect = 7e-70
 Identities = 146/255 (57%), Positives = 176/255 (69%)
 Frame = -3

Query: 2867 TEEDTSVGDEVQGLLKEISKESQGNFQAKQRKRPKMVAGVAIGKYHILKRRQMKIETEAW 2688
            +EED S  DEVQ L++E++K        K  K+PK++ GVA GK+++L+RRQ+K+ETEAW
Sbjct: 102  SEEDMSGVDEVQELVEEVNKGD------KLEKQPKLIGGVAQGKHNVLRRRQIKMETEAW 155

Query: 2687 EQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFEPLRDSIASEQELCKKGKSRAAYAPY 2508
            E+AAKEY+ELL+DMCEQKLAPNLPY+KSLFLGWFEPLRD IA+EQ+LCK+GK+RAAYAPY
Sbjct: 156  EEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPY 215

Query: 2507 FDQLPAEMMAVITMHKLMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2328
            FD LPA+MMAVITMHKLMG                                         
Sbjct: 216  FDHLPADMMAVITMHKLMG------------------LLMTGEGNGSARVVQAACHIGEA 257

Query: 2327 IEHEVRIYIFLEKTKKKASQDMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVK 2148
            IEHEVRI  F+EKTKKK++     +GG  +   KEQ KLR KV+ LMKKQKL+QVR IVK
Sbjct: 258  IEHEVRIQRFMEKTKKKSASSNNPDGGS-NPVTKEQEKLRKKVSMLMKKQKLQQVRQIVK 316

Query: 2147 GQDDVKPWGQDAQAK 2103
             QDD KPWGQDA  K
Sbjct: 317  RQDDSKPWGQDANVK 331


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score = 1086 bits (2808), Expect = 0.0
 Identities = 526/651 (80%), Positives = 587/651 (90%), Gaps = 1/651 (0%)
 Frame = -1

Query: 1987 VGSRLIELLVQSAYIQPPVD-QLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPL 1811
            VGSRLIELL+Q+AYIQPPVD QLAD PPDIRPAF HT +TV ++ +KI RR+G+IECDPL
Sbjct: 388  VGSRLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPL 447

Query: 1810 VRQGMERTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQK 1631
            V++G+ERTARHMVIPY+PML+PP KW GYDKGA+LFLPSYVMRTHGA+QQREAVK+ P+ 
Sbjct: 448  VKKGLERTARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRN 507

Query: 1630 QIGPVFEALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAEL 1451
            Q+ PVFEAL+TLG+ KWR+NKRL  VVDR+WA GG  A LV+R+DVPLPE+P  EDEA+L
Sbjct: 508  QLEPVFEALNTLGNTKWRINKRLFDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQL 567

Query: 1450 RNWRWXXXXXXKENSERHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLN 1271
            R W+W      K NSERHS RCD+ELKLAVARKMK EDGF+YPHNLDFRGRAYPMHPYLN
Sbjct: 568  RKWKWKVKSVKKANSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLN 627

Query: 1270 HLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIF 1091
            HLGSDLCRGILEFAEGRPLG SGL WLKIHLANLF AGGVDKLS+EGRI FTE++LD+IF
Sbjct: 628  HLGSDLCRGILEFAEGRPLGSSGLHWLKIHLANLF-AGGVDKLSHEGRITFTENHLDDIF 686

Query: 1090 DSADRPLEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYA 911
            DSADRPLEG +WWL AEDPFQ LA C+NLSEALRSSSPETTISHIPVHQDGSCNGLQHYA
Sbjct: 687  DSADRPLEGKRWWLNAEDPFQFLAACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYA 746

Query: 910  ALGRDKLGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNW 731
            ALGRD+LGA AVNLVAGEKPADVYSGIA RV +IM+ DA+KDPA   + LRA++LI  N 
Sbjct: 747  ALGRDQLGATAVNLVAGEKPADVYSGIAARVLDIMKRDAEKDPAIFPDALRARILI--NQ 804

Query: 730  VNRKLVKQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEM 551
            V+RKLVKQTVMTSVYGVTYIGARDQIK+RLKER+   ++ E FG ACYAAK+TLTALGEM
Sbjct: 805  VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNAIADDVELFGAACYAAKITLTALGEM 864

Query: 550  FEAARSIMSWLSDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRET 371
            F+AARSIMSWL DCAK+IA +N PVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRET
Sbjct: 865  FQAARSIMSWLGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRET 924

Query: 370  DKVMVKRQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRIL 191
            + +MVKRQ+TAFPPNFVHSLDGSHMMMTA+ACK+AGLNFAGVHDSYWTHACDVDEMNR+L
Sbjct: 925  ETIMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRLL 984

Query: 190  REKFVELYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 38
            REKFV+LYE PILENLL SFQ+SFP LEFPPLPERGDF+L+EVLES YFFN
Sbjct: 985  REKFVQLYETPILENLLESFQQSFPALEFPPLPERGDFDLREVLESPYFFN 1035



 Score =  266 bits (681), Expect = 2e-68
 Identities = 146/257 (56%), Positives = 168/257 (65%), Gaps = 1/257 (0%)
 Frame = -3

Query: 2870 DTEEDTSVGDEVQGLLKEISKESQGNFQAKQRKRPKMVAGVAIGKYHILKRRQMKIETEA 2691
            D EED S  DE+Q LL E+ KE +     K+R++ KM  G+  G+Y  L+RRQ+KIETEA
Sbjct: 149  DVEEDVSASDEIQELLGEMKKEEKRQVNFKRREKLKMERGMEQGRYLRLRRRQVKIETEA 208

Query: 2690 WEQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFEPLRDSIASEQELCKKGKSRAAYAP 2511
            WE AAKEYKELL DMCEQKLAPNLPYMKSLFLGWFEPLRD+I  EQELC+ GK++AAYAP
Sbjct: 209  WELAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAP 268

Query: 2510 YFDQLPAEMMAVITMHKLMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2331
            YFDQLPA+MM+VITMHKL+G                                        
Sbjct: 269  YFDQLPADMMSVITMHKLVG------------------LLMTGGEHGSTRVVQAACVIGD 310

Query: 2330 XIEHEVRIYIFLEKTK-KKASQDMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHI 2154
             IE EVRI+ FLEKTK KK  +D   EGG  D    EQ KLR KVTNLMKKQKL   R I
Sbjct: 311  AIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVTNLMKKQKLHAARQI 370

Query: 2153 VKGQDDVKPWGQDAQAK 2103
            VKG D+ KPWG +A+AK
Sbjct: 371  VKGHDNSKPWGPEAKAK 387


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score = 1082 bits (2798), Expect = 0.0
 Identities = 517/650 (79%), Positives = 588/650 (90%)
 Frame = -1

Query: 1987 VGSRLIELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLV 1808
            VG RLI++L+++AYIQPP DQL DGPPDIRPAF HTL+TV+    K SRRYG+I+CDPLV
Sbjct: 358  VGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVET--MKGSRRYGVIQCDPLV 415

Query: 1807 RQGMERTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQ 1628
            R+G+++TARHMVIPYMPML+PP  W+GYDKG YLFLPSY+MRTHGAKQQREAVK+ P+KQ
Sbjct: 416  RKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQ 475

Query: 1627 IGPVFEALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELR 1448
            + PVF+ALDTLG+ KWRVN+++LG+VDR+WASGG+ A LV+R+DVPLPE P  EDEAE+R
Sbjct: 476  LEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAEIR 535

Query: 1447 NWRWXXXXXXKENSERHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNH 1268
             W+W      KEN ERHS RCD+ELKLAVARKMK EDGFYYPHNLDFRGRAYPMHPYLNH
Sbjct: 536  KWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNH 595

Query: 1267 LGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFD 1088
            LGSDLCRGILEFAEGRPLG SGLRWLKIHLAN++  GGVDKLSYEGR+AF+E++L++IFD
Sbjct: 596  LGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYG-GGVDKLSYEGRVAFSENHLEDIFD 654

Query: 1087 SADRPLEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAA 908
            SA+RPLEG +WWL AEDPFQCLA C+N++EALRS SPET IS++P+HQDGSCNGLQHYAA
Sbjct: 655  SAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAA 714

Query: 907  LGRDKLGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWV 728
            LGRDKLGAAAVNLVAG+KPADVYSGIA RV +IM+ DA KDPA D NV+RA+LLI  N V
Sbjct: 715  LGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLI--NQV 772

Query: 727  NRKLVKQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMF 548
            +RKLVKQTVMTSVYGVTYIGARDQIKKRLKER    ++ E F  ACYAAK TLTALGEMF
Sbjct: 773  DRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMF 832

Query: 547  EAARSIMSWLSDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETD 368
            EAARSIMSWL DCAK+IA++NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETD
Sbjct: 833  EAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETD 892

Query: 367  KVMVKRQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILR 188
            KVMVKRQ+TAFPPNFVHSLDGSHMMMTA+ACK +GL+FAGVHDSYWTHACDVD+MN+ILR
Sbjct: 893  KVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILR 952

Query: 187  EKFVELYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 38
            EKFVELY+ PILENLL SFQ+SFP L+FPPLPERGDF+L+EVLES YFFN
Sbjct: 953  EKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002



 Score =  259 bits (661), Expect = 4e-66
 Identities = 142/257 (55%), Positives = 172/257 (66%), Gaps = 2/257 (0%)
 Frame = -3

Query: 2867 TEEDTSVGDEVQGLLKEISKESQGNFQAKQRKRPKMVAGVAIGKYHILKRRQMKIETEAW 2688
            +EED    DE+Q L++E+ KE++      Q K+PK + G+ +GKY+ L+RRQ+K+ETEAW
Sbjct: 125  SEEDI---DEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQIKVETEAW 181

Query: 2687 EQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFEPLRDSIASEQELCKKGKSRAAYAPY 2508
            E+AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLRD+IA+EQ+LC +GK+R AYAP+
Sbjct: 182  EEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPF 241

Query: 2507 FDQLPAEMMAVITMHKLMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2328
            FDQLPAEMMAVITMHKLMG                                         
Sbjct: 242  FDQLPAEMMAVITMHKLMG------------------LLMTGGGTGSARVVQAASYIGEA 283

Query: 2327 IEHEVRIYIFLEKTKKK--ASQDMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHI 2154
            IEHE RI+ FLEKTKK    S D+E+  G+     KE+ +LR KV  LMKKQKL+QVR I
Sbjct: 284  IEHEARIHRFLEKTKKSNALSGDLEETPGD---MMKERERLRKKVKILMKKQKLRQVRKI 340

Query: 2153 VKGQDDVKPWGQDAQAK 2103
            VK QDD KPWGQD   K
Sbjct: 341  VKQQDDEKPWGQDNLVK 357


>emb|CAC95022.1| mitochondrial RNA polymerase [Nicotiana tabacum]
          Length = 715

 Score = 1082 bits (2798), Expect = 0.0
 Identities = 517/650 (79%), Positives = 588/650 (90%)
 Frame = -1

Query: 1987 VGSRLIELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLV 1808
            VG RLI++L+++AYIQPP DQL DGPPDIRPAF HTL+TV+    K SRRYG+I+CDPLV
Sbjct: 71   VGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVET--MKGSRRYGVIQCDPLV 128

Query: 1807 RQGMERTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQ 1628
            R+G+++TARHMVIPYMPML+PP  W+GYDKG YLFLPSY+MRTHGAKQQREAVK+ P+KQ
Sbjct: 129  RKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQ 188

Query: 1627 IGPVFEALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELR 1448
            + PVF+ALDTLG+ KWRVN+++LG+VDR+WASGG+ A LV+R+DVPLPE P  EDEAE+R
Sbjct: 189  LEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAEIR 248

Query: 1447 NWRWXXXXXXKENSERHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNH 1268
             W+W      KEN ERHS RCD+ELKLAVARKMK EDGFYYPHNLDFRGRAYPMHPYLNH
Sbjct: 249  KWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNH 308

Query: 1267 LGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFD 1088
            LGSDLCRGILEFAEGRPLG SGLRWLKIHLAN++  GGVDKLSYEGR+AF+E++L++IFD
Sbjct: 309  LGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYG-GGVDKLSYEGRVAFSENHLEDIFD 367

Query: 1087 SADRPLEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAA 908
            SA+RPLEG +WWL AEDPFQCLA C+N++EALRS SPET IS++P+HQDGSCNGLQHYAA
Sbjct: 368  SAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAA 427

Query: 907  LGRDKLGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWV 728
            LGRDKLGAAAVNLVAG+KPADVYSGIA RV +IM+ DA KDPA D NV+RA+LLI  N V
Sbjct: 428  LGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLI--NQV 485

Query: 727  NRKLVKQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMF 548
            +RKLVKQTVMTSVYGVTYIGARDQIKKRLKER    ++ E F  ACYAAK TLTALGEMF
Sbjct: 486  DRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMF 545

Query: 547  EAARSIMSWLSDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETD 368
            EAARSIMSWL DCAK+IA++NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETD
Sbjct: 546  EAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETD 605

Query: 367  KVMVKRQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILR 188
            KVMVKRQ+TAFPPNFVHSLDGSHMMMTA+ACK +GL+FAGVHDSYWTHACDVD+MN+ILR
Sbjct: 606  KVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILR 665

Query: 187  EKFVELYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 38
            EKFVELY+ PILENLL SFQ+SFP L+FPPLPERGDF+L+EVLES YFFN
Sbjct: 666  EKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 715



 Score = 72.0 bits (175), Expect = 8e-10
 Identities = 42/72 (58%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
 Frame = -3

Query: 2312 RIYIFLEKTKKK--ASQDMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQD 2139
            RI+ FLEKTKK    S D+E+  G+     KE+ +LR KV  LMKKQKL+QVR IVK QD
Sbjct: 2    RIHRFLEKTKKSNALSGDLEETPGD---MMKERERLRKKVKILMKKQKLRQVRKIVKQQD 58

Query: 2138 DVKPWGQDAQAK 2103
            D KPWGQD   K
Sbjct: 59   DEKPWGQDNLVK 70