BLASTX nr result

ID: Papaver22_contig00010152 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00010152
         (656 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_175525.1| Nse4, component of Smc5/6 DNA repair complex [A...    90   4e-16
emb|CBI30028.3| unnamed protein product [Vitis vinifera]               89   9e-16
ref|XP_002279026.1| PREDICTED: non-structural maintenance of chr...    89   9e-16
ref|XP_004149035.1| PREDICTED: non-structural maintenance of chr...    85   1e-14
ref|XP_003592856.1| Non-structural maintenance of chromosomes el...    82   1e-13

>ref|NP_175525.1| Nse4, component of Smc5/6 DNA repair complex [Arabidopsis thaliana]
           gi|12320790|gb|AAG50545.1|AC079828_16 hypothetical
           protein [Arabidopsis thaliana]
           gi|28393397|gb|AAO42122.1| unknown protein [Arabidopsis
           thaliana] gi|29824223|gb|AAP04072.1| unknown protein
           [Arabidopsis thaliana] gi|332194504|gb|AEE32625.1| Nse4,
           component of Smc5/6 DNA repair complex [Arabidopsis
           thaliana]
          Length = 403

 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 49/98 (50%), Positives = 60/98 (61%)
 Frame = +2

Query: 2   YNHFVLRLDFKDWKLLKDTVTIGEELMPHRTPANISSDAQREVTGRSSHGARTSTQRELI 181
           YNHFV RLDFKDWKL+ + V +GEELMPHR  A  SS         S+  +   TQ    
Sbjct: 306 YNHFVFRLDFKDWKLMSEMVPLGEELMPHRQTAVASSSC----PAASAPASADFTQ---- 357

Query: 182 RERSEGAAAGTQTTPIRKFSRNRGLVIQEDSVIEDSSE 295
                     TQTTPIRK SRNRGLV+QE++V+ED+ +
Sbjct: 358 ---------DTQTTPIRKLSRNRGLVVQEETVVEDTPD 386


>emb|CBI30028.3| unnamed protein product [Vitis vinifera]
          Length = 452

 Score = 88.6 bits (218), Expect = 9e-16
 Identities = 48/99 (48%), Positives = 60/99 (60%)
 Frame = +2

Query: 2   YNHFVLRLDFKDWKLLKDTVTIGEELMPHRTPANISSDAQREVTGRSSHGARTSTQRELI 181
           YNHFV R DFKDWKL+  +V  GEELMP R   N+ +                ++Q + +
Sbjct: 352 YNHFVFRFDFKDWKLMATSVGAGEELMPQRNSVNLPN----------------NSQTDSV 395

Query: 182 RERSEGAAAGTQTTPIRKFSRNRGLVIQEDSVIEDSSEN 298
            E  E AAA   TTPIRK SRNRGLV+QE +V+EDS E+
Sbjct: 396 AEECEAAAA--PTTPIRKLSRNRGLVLQEQAVVEDSPES 432


>ref|XP_002279026.1| PREDICTED: non-structural maintenance of chromosome element 4
           [Vitis vinifera]
          Length = 380

 Score = 88.6 bits (218), Expect = 9e-16
 Identities = 48/99 (48%), Positives = 60/99 (60%)
 Frame = +2

Query: 2   YNHFVLRLDFKDWKLLKDTVTIGEELMPHRTPANISSDAQREVTGRSSHGARTSTQRELI 181
           YNHFV R DFKDWKL+  +V  GEELMP R   N+ +                ++Q + +
Sbjct: 280 YNHFVFRFDFKDWKLMATSVGAGEELMPQRNSVNLPN----------------NSQTDSV 323

Query: 182 RERSEGAAAGTQTTPIRKFSRNRGLVIQEDSVIEDSSEN 298
            E  E AAA   TTPIRK SRNRGLV+QE +V+EDS E+
Sbjct: 324 AEECEAAAA--PTTPIRKLSRNRGLVLQEQAVVEDSPES 360


>ref|XP_004149035.1| PREDICTED: non-structural maintenance of chromosome element 4-like
           [Cucumis sativus] gi|449525500|ref|XP_004169755.1|
           PREDICTED: non-structural maintenance of chromosome
           element 4-like [Cucumis sativus]
          Length = 415

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 48/99 (48%), Positives = 58/99 (58%)
 Frame = +2

Query: 2   YNHFVLRLDFKDWKLLKDTVTIGEELMPHRTPANISSDAQREVTGRSSHGARTSTQRELI 181
           Y+HFV R D+KDWK + D V +GEELMPHRT  N    +Q EV   +S            
Sbjct: 315 YSHFVFRFDYKDWKPMVDMVPVGEELMPHRTFLNSVQVSQEEVAADNSE----------- 363

Query: 182 RERSEGAAAGTQTTPIRKFSRNRGLVIQEDSVIEDSSEN 298
                  +AG  TTPIRK SRNRGLV+Q  SV+EDS +N
Sbjct: 364 -------SAGLPTTPIRKLSRNRGLVMQ--SVVEDSPDN 393


>ref|XP_003592856.1| Non-structural maintenance of chromosomes element-like protein
           [Medicago truncatula] gi|355481904|gb|AES63107.1|
           Non-structural maintenance of chromosomes element-like
           protein [Medicago truncatula]
          Length = 384

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 45/98 (45%), Positives = 57/98 (58%)
 Frame = +2

Query: 2   YNHFVLRLDFKDWKLLKDTVTIGEELMPHRTPANISSDAQREVTGRSSHGARTSTQRELI 181
           Y HFV R D+KDWK++KD V  G+ELMPHR   + ++D  +E  G  S     STQ    
Sbjct: 285 YTHFVFRYDYKDWKIMKDIVPDGKELMPHRIQYSTAADPSQEEMGGDS-----STQ---- 335

Query: 182 RERSEGAAAGTQTTPIRKFSRNRGLVIQEDSVIEDSSE 295
                        TPIRK SRNRG V+QE+SV+E+S E
Sbjct: 336 ---------ALAVTPIRKISRNRGRVLQEESVVEESPE 364


Top