BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00005778
         (3145 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...  1753   0.0  
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...  1730   0.0  
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...  1722   0.0  
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su...  1718   0.0  
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...  1715   0.0  

>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score = 1753 bits (4541), Expect = 0.0
 Identities = 872/922 (94%), Positives = 896/922 (97%)
 Frame = -3

Query: 2768 AWPVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETV 2589
            AW VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDF+ET+
Sbjct: 27   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFLETI 86

Query: 2588 YKISFGQIYLSKPMMTESDGETATLFPRAARLRNLTYSAPLYVDVSKRIIKKGHDCEEVT 2409
            YKISFGQIYLSKPMMTESDGETATLFP+AARLRNLTYSAPLYVDV+KRIIKKGHD EEVT
Sbjct: 87   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDLEEVT 146

Query: 2408 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 2229
            ETQ+FTKVFIGKVPIMLRSSYCT+YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 147  ETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 206

Query: 2228 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSGMFVRMLSRASAKGGSSGQYIRATL 2049
            MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS MFVRMLSR SAKGGSSGQYIRATL
Sbjct: 207  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATL 266

Query: 2048 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQQVALDY 1869
            PYIRTEIPIIIVFRALGFVADKDILEHICYDFSD QMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 267  PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 326

Query: 1868 IGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETRKAYYFGYIIHRLLLCALGRR 1689
            IGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCET+KAYYFGYIIHRLLLCALGRR
Sbjct: 327  IGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 386

Query: 1688 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIRAKTI 1509
            PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAI+AKTI
Sbjct: 387  PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 446

Query: 1508 TTGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 1329
            T+GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 447  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 506

Query: 1328 HNSQWGIMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEFGMENFEEISPAVI 1149
            HNS WG+MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEE+  ENFEEISPAVI
Sbjct: 507  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI 566

Query: 1148 PQSTKIFVNGCWVGIHRNPEPLVKTXXXXXXRVDVNTEVGVIREVRLKELRLYTDYGRCS 969
            PQSTKIFVNGCWVGIHRNP+ LVKT      +VDVNTEVGVIR++RLKELRLYTDYGRCS
Sbjct: 567  PQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCS 626

Query: 968  RPLFIVEKQRLLIKKRDIRALQQRESPEEDGWHDLVAKGYIEYVDXXXXXXTMISMTIND 789
            RPLFIVEKQRLLIKKRDIRALQ RESPE+ GWHDLV+KG+IEYVD      TMISMTIND
Sbjct: 627  RPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTIND 686

Query: 788  LVSARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 609
            L+SAR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 687  LISARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 746

Query: 608  TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 429
            TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 747  TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 806

Query: 428  QSSIDRGFFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 249
            QSSIDRGFFRSLFFRSYRDEEKKMGTL+KEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG
Sbjct: 807  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 866

Query: 248  TRVSGEDVIIGKTTPIAQDDAQQGQASRYTRRDHSTSMRHSESGMVDQVVLTTNADGLRF 69
            TRVSGEDVIIGKTTPI+QDD+ QGQASRYTRRDHSTS+RHSESGMVDQV+LTTNADGLRF
Sbjct: 867  TRVSGEDVIIGKTTPISQDDS-QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRF 925

Query: 68   VKVRMRSVRIPQIGDKFSSRHG 3
            VKVRMRSVRIPQIGDKFSSRHG
Sbjct: 926  VKVRMRSVRIPQIGDKFSSRHG 947


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score = 1730 bits (4480), Expect = 0.0
 Identities = 856/922 (92%), Positives = 893/922 (96%)
 Frame = -3

Query: 2768 AWPVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETV 2589
            AW VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDF ET+
Sbjct: 25   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 84

Query: 2588 YKISFGQIYLSKPMMTESDGETATLFPRAARLRNLTYSAPLYVDVSKRIIKKGHDCEEVT 2409
            YKISFGQIYLSKPMMTESDGETATLFP+AARLRNLTYSAPLYVDV+KR+IKKGHD EEVT
Sbjct: 85   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 144

Query: 2408 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 2229
            ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 145  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 204

Query: 2228 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSGMFVRMLSRASAKGGSSGQYIRATL 2049
            MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS MFVRMLSR SAKGGSSGQYIRATL
Sbjct: 205  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 264

Query: 2048 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQQVALDY 1869
            PYIRTEIPIIIVFRALGFVADKDILEHICYDF+D QMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 265  PYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDY 324

Query: 1868 IGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETRKAYYFGYIIHRLLLCALGRR 1689
            IGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVGEYCET+KAYYFGYIIHRLLLCALGRR
Sbjct: 325  IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 384

Query: 1688 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIRAKTI 1509
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAI+AKTI
Sbjct: 385  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 444

Query: 1508 TTGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 1329
            T+GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 445  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 504

Query: 1328 HNSQWGIMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEFGMENFEEISPAVI 1149
            HNSQWG+MCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEE+G ENFEEISPAVI
Sbjct: 505  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 564

Query: 1148 PQSTKIFVNGCWVGIHRNPEPLVKTXXXXXXRVDVNTEVGVIREVRLKELRLYTDYGRCS 969
            PQ+TKIFVNGCWVGIHR+P+ LV+T      RVDVNTEVGV+R++RLKELR+YTDYGRCS
Sbjct: 565  PQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 624

Query: 968  RPLFIVEKQRLLIKKRDIRALQQRESPEEDGWHDLVAKGYIEYVDXXXXXXTMISMTIND 789
            RPLFIVEKQRLLIK++DI+ALQQRE+PE+ GWHDLVAKG+IEY+D      TMISMTIND
Sbjct: 625  RPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 684

Query: 788  LVSARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 609
            LVSAR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 685  LVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 744

Query: 608  TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 429
            TNYQ RMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 745  TNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 804

Query: 428  QSSIDRGFFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 249
            QSSIDRGFFRSLFFRSYRDEEKKMGTL+KEDFGRP+R NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 805  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPG 864

Query: 248  TRVSGEDVIIGKTTPIAQDDAQQGQASRYTRRDHSTSMRHSESGMVDQVVLTTNADGLRF 69
            TRVSGEDV+IGKTTPIAQD+A QG A+RYTRRDHSTS+RHSE+GMVDQV+LTTNADGLRF
Sbjct: 865  TRVSGEDVVIGKTTPIAQDEA-QGPAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRF 923

Query: 68   VKVRMRSVRIPQIGDKFSSRHG 3
            VKVR+RSVRIPQIGDKFSSRHG
Sbjct: 924  VKVRVRSVRIPQIGDKFSSRHG 945


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 1722 bits (4461), Expect = 0.0
 Identities = 855/922 (92%), Positives = 889/922 (96%)
 Frame = -3

Query: 2768 AWPVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETV 2589
            AW VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDF ET+
Sbjct: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87

Query: 2588 YKISFGQIYLSKPMMTESDGETATLFPRAARLRNLTYSAPLYVDVSKRIIKKGHDCEEVT 2409
            YKISFGQIYLSKPMMTESDGETATLFP+AARLRNLTYSAPLYVDV+KR+IKKGHD EEVT
Sbjct: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147

Query: 2408 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 2229
            ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 148  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207

Query: 2228 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSGMFVRMLSRASAKGGSSGQYIRATL 2049
            MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS MFVRMLSR SAKGGSSGQYIRATL
Sbjct: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 267

Query: 2048 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQQVALDY 1869
            PYIRTEIPIIIVFRALGFVADKDILEHICYDFSD QMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 268  PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 327

Query: 1868 IGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETRKAYYFGYIIHRLLLCALGRR 1689
            IGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVGEYCET+KAYYFGYIIHRLLLCALGRR
Sbjct: 328  IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 387

Query: 1688 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIRAKTI 1509
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAI+AKTI
Sbjct: 388  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 447

Query: 1508 TTGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 1329
            T+GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 448  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507

Query: 1328 HNSQWGIMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEFGMENFEEISPAVI 1149
            HNSQWG+MCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEE+G ENFEEISPAVI
Sbjct: 508  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567

Query: 1148 PQSTKIFVNGCWVGIHRNPEPLVKTXXXXXXRVDVNTEVGVIREVRLKELRLYTDYGRCS 969
            PQ+TKIFVNGCWVGIHR+P+ LVKT      RVDVNTEVGV+R++RLKELR+YTDYGRCS
Sbjct: 568  PQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 627

Query: 968  RPLFIVEKQRLLIKKRDIRALQQRESPEEDGWHDLVAKGYIEYVDXXXXXXTMISMTIND 789
            RPLFIVEKQRLLIKK+DI ALQQRES EE GWHDLVAKG+IEY+D      TMISMTI+D
Sbjct: 628  RPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHD 687

Query: 788  LVSARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 609
            LV AR NPEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 688  LVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 747

Query: 608  TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 429
            TNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 748  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 807

Query: 428  QSSIDRGFFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 249
            QSSIDRGFFRSLFFRSYRDEEKKMGTL+KEDFGRP+R NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 808  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPG 867

Query: 248  TRVSGEDVIIGKTTPIAQDDAQQGQASRYTRRDHSTSMRHSESGMVDQVVLTTNADGLRF 69
            TRVSGEDVIIGKTTPIAQ++A QGQ++RYTRRDHS S+RHSE+G+VDQV+LTTNADGLRF
Sbjct: 868  TRVSGEDVIIGKTTPIAQEEA-QGQSARYTRRDHSISLRHSETGIVDQVLLTTNADGLRF 926

Query: 68   VKVRMRSVRIPQIGDKFSSRHG 3
            VKVR+RSVRIPQIGDKFSSRHG
Sbjct: 927  VKVRVRSVRIPQIGDKFSSRHG 948


>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus] gi|449479313|ref|XP_004155566.1| PREDICTED:
            DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
          Length = 1199

 Score = 1718 bits (4450), Expect = 0.0
 Identities = 852/922 (92%), Positives = 888/922 (96%)
 Frame = -3

Query: 2768 AWPVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETV 2589
            AW VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSD  ET+
Sbjct: 33   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDVAETI 92

Query: 2588 YKISFGQIYLSKPMMTESDGETATLFPRAARLRNLTYSAPLYVDVSKRIIKKGHDCEEVT 2409
            YKISFGQIYLSKPMMTESDGETATLFP+AARLRNLTYSAPLYVDVSKR+IKKGHD EEVT
Sbjct: 93   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVT 152

Query: 2408 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 2229
            ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 153  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 212

Query: 2228 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSGMFVRMLSRASAKGGSSGQYIRATL 2049
            MSTNHVYVFKKRQPNKYA+VAEVRSMAESQNRPPS MFVRMLSR SAKGGSSGQYIRATL
Sbjct: 213  MSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 272

Query: 2048 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQQVALDY 1869
            PYIR EIPIIIVFRALGFVADKDILEHICYDFSD QMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 273  PYIRNEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 332

Query: 1868 IGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETRKAYYFGYIIHRLLLCALGRR 1689
            IGKRGSTVGVT+EKRIKYAKEILQKEMLPHVGVGE+CET+KAYYFGYIIHRLLLCALGRR
Sbjct: 333  IGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRR 392

Query: 1688 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIRAKTI 1509
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAI+AKTI
Sbjct: 393  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 452

Query: 1508 TTGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 1329
            T+GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 453  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 512

Query: 1328 HNSQWGIMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEFGMENFEEISPAVI 1149
            HNSQWG+MCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEE+G ENFEEISPAVI
Sbjct: 513  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 572

Query: 1148 PQSTKIFVNGCWVGIHRNPEPLVKTXXXXXXRVDVNTEVGVIREVRLKELRLYTDYGRCS 969
            PQ+TKIFVNGCWVGIHR+PE LVKT      RVDVNTEVGV+R++RLKELR+YTDYGRCS
Sbjct: 573  PQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 632

Query: 968  RPLFIVEKQRLLIKKRDIRALQQRESPEEDGWHDLVAKGYIEYVDXXXXXXTMISMTIND 789
            RPLFIVEKQRLLIKK+DI ALQQRESPE+ GWHDLVAKG+IEY+D      TMISMTI+D
Sbjct: 633  RPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISD 692

Query: 788  LVSARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 609
            L+ AR NP EAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 693  LIQARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 752

Query: 608  TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 429
            TNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 753  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 812

Query: 428  QSSIDRGFFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 249
            QSSIDRGFFRSLFFRSYRDEEKKMGTL+KEDFGRP+R NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 813  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 872

Query: 248  TRVSGEDVIIGKTTPIAQDDAQQGQASRYTRRDHSTSMRHSESGMVDQVVLTTNADGLRF 69
            TRVSGEDVIIGKTTPI+Q++A QGQA+RY+RRDHS S+RHSE+G+VDQV+LTTNADGLRF
Sbjct: 873  TRVSGEDVIIGKTTPISQEEA-QGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRF 931

Query: 68   VKVRMRSVRIPQIGDKFSSRHG 3
            VKVR+RSVRIPQIGDKFSSRHG
Sbjct: 932  VKVRVRSVRIPQIGDKFSSRHG 953


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score = 1715 bits (4442), Expect = 0.0
 Identities = 849/922 (92%), Positives = 889/922 (96%)
 Frame = -3

Query: 2768 AWPVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETV 2589
            AW VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDF ET+
Sbjct: 25   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 84

Query: 2588 YKISFGQIYLSKPMMTESDGETATLFPRAARLRNLTYSAPLYVDVSKRIIKKGHDCEEVT 2409
            YKI+FGQIYLSKPMMTESDGETATLFP+AARLRNLTYSAPLYVDV+KR+IKKGHD EEVT
Sbjct: 85   YKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 144

Query: 2408 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 2229
            ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVLIAQEK
Sbjct: 145  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEK 204

Query: 2228 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSGMFVRMLSRASAKGGSSGQYIRATL 2049
            MSTNHVYVFKKRQPNKYA+VAEVRSMA++QNRPPS MFVRMLSR SAKGGSSGQYIRATL
Sbjct: 205  MSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 264

Query: 2048 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQQVALDY 1869
            PYIRTEIPIIIVFRALGFVADKDILEHICYDF+D QMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 265  PYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDY 324

Query: 1868 IGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETRKAYYFGYIIHRLLLCALGRR 1689
            IGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVGEYCET+KAYYFGYIIHRLLLCALGRR
Sbjct: 325  IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 384

Query: 1688 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIRAKTI 1509
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAI+AKTI
Sbjct: 385  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 444

Query: 1508 TTGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 1329
            T+GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 445  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 504

Query: 1328 HNSQWGIMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEFGMENFEEISPAVI 1149
            HNSQWG+MCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEE+G ENFEEISPAVI
Sbjct: 505  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 564

Query: 1148 PQSTKIFVNGCWVGIHRNPEPLVKTXXXXXXRVDVNTEVGVIREVRLKELRLYTDYGRCS 969
            PQ+TKIFVNG WVGIHR+P+ LV+T      RVDVNTEVGV+R++RLKELR+YTDYGRCS
Sbjct: 565  PQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 624

Query: 968  RPLFIVEKQRLLIKKRDIRALQQRESPEEDGWHDLVAKGYIEYVDXXXXXXTMISMTIND 789
            RPLFIVEKQRL+IKK+DI+ LQQRESP+E GWHDLVAKGYIEY+D      TMISMTIND
Sbjct: 625  RPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMISMTIND 684

Query: 788  LVSARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 609
            LV AR NP +AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 685  LVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 744

Query: 608  TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 429
            TNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMN
Sbjct: 745  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMN 804

Query: 428  QSSIDRGFFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 249
            QSSIDRGFFRSLFFRSYRDEEKKMGTL+KEDFGRP+R +TMGMRHGSYDKLDDDGLAPPG
Sbjct: 805  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPG 864

Query: 248  TRVSGEDVIIGKTTPIAQDDAQQGQASRYTRRDHSTSMRHSESGMVDQVVLTTNADGLRF 69
            TRVSGEDVIIGKTTPI+QDDA QGQASRYTR+DHSTS+RHSE+GMVDQV+LTTNADGLRF
Sbjct: 865  TRVSGEDVIIGKTTPISQDDA-QGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRF 923

Query: 68   VKVRMRSVRIPQIGDKFSSRHG 3
            VKVR+RSVRIPQIGDKFSSRHG
Sbjct: 924  VKVRVRSVRIPQIGDKFSSRHG 945