BLASTX nr result

ID: Papaver22_contig00004936 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00004936
         (1754 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634203.1| PREDICTED: uncharacterized protein LOC100853...   100   1e-18
gb|AAA50196.1| DNA-binding protein [Nicotiana tabacum]                100   2e-18
ref|XP_002311516.1| high mobility group family [Populus trichoca...    99   3e-18
ref|NP_001061850.2| Os08g0428800 [Oryza sativa Japonica Group] g...    99   4e-18
emb|CAA15421.1| HMR1 protein [Antirrhinum majus]                       97   1e-17

>ref|XP_003634203.1| PREDICTED: uncharacterized protein LOC100853898 [Vitis vinifera]
           gi|147815426|emb|CAN74749.1| hypothetical protein
           VITISV_021497 [Vitis vinifera]
           gi|297734307|emb|CBI15554.3| unnamed protein product
           [Vitis vinifera]
          Length = 355

 Score =  100 bits (249), Expect = 1e-18
 Identities = 71/201 (35%), Positives = 97/201 (48%)
 Frame = +2

Query: 248 APSPPPKQTPNNHKNHPPYHEMIITAIKALNEKTGSSKKAIAKFIDSAYTNLPQSHSALL 427
           A +P P   P +  NHPPY EMI TAI ALNE+TGSSKKAIAK+I+  + +LP SH ALL
Sbjct: 28  AANPTPSHGPPH--NHPPYAEMITTAIGALNERTGSSKKAIAKYIERTFGDLPPSHPALL 85

Query: 428 SNHLKRLKDNGVIITIKNSYXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGRGRPPKTNTV 607
           ++HLKRL+ +G ++ +K+SY                           KRGRGRPPK    
Sbjct: 86  THHLKRLRSSGQVVMVKHSY-----MLPRSGDDAHALPLHPGPVSGPKRGRGRPPKPKIP 140

Query: 608 VALXXXXXXXXXXXXXXXXLNPNPSPNTITTIARGGTPNTTTIIVGGGSPNTTTAVVGGV 787
           V                      P+  ++  +A G          G G P  +    GGV
Sbjct: 141 V---------------------QPTSESV-LVAVGLVDGPVVPKRGPGRPPKS----GGV 174

Query: 788 QDRSGEAVLPAKRGRGRPPRS 850
           +    +++   KR  GRPP++
Sbjct: 175 RGPRPKSLDGPKRRPGRPPKA 195


>gb|AAA50196.1| DNA-binding protein [Nicotiana tabacum]
          Length = 546

 Score = 99.8 bits (247), Expect = 2e-18
 Identities = 47/85 (55%), Positives = 59/85 (69%)
 Frame = +2

Query: 233 HVTTTAPSPPPKQTPNNHKNHPPYHEMIITAIKALNEKTGSSKKAIAKFIDSAYTNLPQS 412
           H  T  P  PP   P+    HPPY EMI  AI AL E+ GSS+ AIAK+ID  YTNLP +
Sbjct: 24  HAPTPTPPQPPPPAPSFSPTHPPYAEMITAAITALKERDGSSRIAIAKYIDRVYTNLPPN 83

Query: 413 HSALLSNHLKRLKDNGVIITIKNSY 487
           HSALL++HLKRLK++G +  +K+SY
Sbjct: 84  HSALLTHHLKRLKNSGYLAMVKHSY 108


>ref|XP_002311516.1| high mobility group family [Populus trichocarpa]
           gi|222851336|gb|EEE88883.1| high mobility group family
           [Populus trichocarpa]
          Length = 207

 Score = 99.4 bits (246), Expect = 3e-18
 Identities = 68/204 (33%), Positives = 93/204 (45%), Gaps = 3/204 (1%)
 Frame = +2

Query: 248 APSPPPKQTPNNHKNHPPYHEMIITAIKALNEKTGSSKKAIAKFIDSAYTNLPQSHSALL 427
           AP+PP +Q+       P Y EMI+ AI+ALNEK GS+K +I+K I+S + +LP +HS LL
Sbjct: 21  APAPPQQQSQQQSSAPPQYPEMIMAAIEALNEKEGSNKTSISKQIESTHPDLPPAHSTLL 80

Query: 428 SNHLKRLKDNGVIITIKNSYXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGRGRPPKTNTV 607
           S+HL ++K +G ++ +KN+Y                           KRGRGRPPK    
Sbjct: 81  SHHLNKMKQSGQLVLVKNNY------------------MKPDPNAPPKRGRGRPPKPKLP 122

Query: 608 V---ALXXXXXXXXXXXXXXXXLNPNPSPNTITTIARGGTPNTTTIIVGGGSPNTTTAVV 778
                +                  P  SP   TT    G P       G    N +TAV 
Sbjct: 123 TPPGTVSGPPRPRGRPPKPRDPFAPVASPKKKTTSTGTGRPR------GRPPKNASTAVP 176

Query: 779 GGVQDRSGEAVLPAKRGRGRPPRS 850
                  G     A+RGRGRPP++
Sbjct: 177 AA--SSGGAPPSGARRGRGRPPKA 198


>ref|NP_001061850.2| Os08g0428800 [Oryza sativa Japonica Group]
           gi|25553691|dbj|BAC24935.1| putative high mobility group
           I/Y (HMGI/Y protein) [Oryza sativa Japonica Group]
           gi|38175502|dbj|BAD01198.1| putative high mobility group
           I/Y (HMGI/Y protein) [Oryza sativa Japonica Group]
           gi|255678466|dbj|BAF23764.2| Os08g0428800 [Oryza sativa
           Japonica Group]
          Length = 178

 Score = 99.0 bits (245), Expect = 4e-18
 Identities = 68/205 (33%), Positives = 90/205 (43%), Gaps = 5/205 (2%)
 Frame = +2

Query: 248 APSPPPKQTPNNHKNHPPYHEMIITAIKALNEKTGSSKKAIAKFIDSAYTNLPQSHSALL 427
           A  PPP          PPY EMI+ AI+ LNEK+GS+K AI+KFI+  Y +LP +H++LL
Sbjct: 7   ASKPPPL---------PPYPEMILAAIEGLNEKSGSNKSAISKFIEGKYGDLPPAHASLL 57

Query: 428 SNHLKRLKDNGVIITIKNSYXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGRGRPPKTNTV 607
           + HL R+K++G +I +KN+Y                           KRGRGRPPK    
Sbjct: 58  TAHLARMKESGELIFLKNNY-----------------FRADAPDAPPKRGRGRPPKPRDP 100

Query: 608 VALXXXXXXXXXXXXXXXXLNPNPSPNTITTIARGGTPN-----TTTIIVGGGSPNTTTA 772
            A                   P P P   +   RG  P      +  I    G P     
Sbjct: 101 NA-------------------PPPPPKPSSPRPRGRPPKSKDPISDAIPKSRGRPPKKAK 141

Query: 773 VVGGVQDRSGEAVLPAKRGRGRPPR 847
                   +G+   P KRGRGRPP+
Sbjct: 142 TAPAPPPAAGDGSAPVKRGRGRPPK 166


>emb|CAA15421.1| HMR1 protein [Antirrhinum majus]
          Length = 400

 Score = 97.4 bits (241), Expect = 1e-17
 Identities = 46/91 (50%), Positives = 65/91 (71%)
 Frame = +2

Query: 215 TNLDQLHVTTTAPSPPPKQTPNNHKNHPPYHEMIITAIKALNEKTGSSKKAIAKFIDSAY 394
           T   +  +     +P PK+ P +  NHPPY EMI +AI ALNE+ GSSK+AIAK+++S +
Sbjct: 27  TTTAEAPIPNPVANPTPKRAPAH--NHPPYAEMITSAISALNERNGSSKRAIAKYVESNF 84

Query: 395 TNLPQSHSALLSNHLKRLKDNGVIITIKNSY 487
           T LP +H++LL+ HLKRLKD G I+ +K+SY
Sbjct: 85  TGLPATHASLLATHLKRLKDTGDILMVKHSY 115


Top