BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00004575
         (2382 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...   603   e-170
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...   598   e-168
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   598   e-168
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   584   e-164
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ...   568   e-159

>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1200

 Score =  603 bits (1555), Expect = e-170
 Identities = 289/438 (65%), Positives = 354/438 (80%), Gaps = 4/438 (0%)
 Frame = +1

Query: 1    DFFIDPFDGSCKINFTKETAFSFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWIME 180
            DF +DPFDG+CK  F++ TAFS K TS HAV+KCDFK EF VRDINE+  Y +    ++ 
Sbjct: 160  DFLVDPFDGTCKFCFSRNTAFSLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLL 219

Query: 181  LQLVSSPLLYYRTADDDIHATVPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQG 360
            LQL S+P ++YRTADDDI A VPFDLLDD+DPWIRTTDFT++  IGRC+SYR+ +PPR G
Sbjct: 220  LQLASAPWVWYRTADDDIEAWVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHG 279

Query: 361  KKLKEAIEYLKKWRIIPFDCPAPKFR----EEPDFGSPMPDPFFCFHPKEKISFELLFLV 528
             KL++A++YLK+ R+        + R    +EPDFG PM DPFFC H KE I+FE+LFLV
Sbjct: 280  SKLRKAVKYLKERRVQVLQEENHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLV 339

Query: 529  NAAIHKGIFSHFQLSDRFFELLRSHEREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLK 708
            NA +HKGIF+  QLS+ FF+LLR+   EVNV+AL +I + + PVF+   RL+ VQ  LLK
Sbjct: 340  NAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLK 399

Query: 709  NPKMIKSFKGLGDSAEVRRLIITPTKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEG 888
            NP + K+ K LGD  E+RRL+ITPTKAYCLPPEVELSNR+LRKY++ ADRFLRVTFMDEG
Sbjct: 400  NPNLFKNPKQLGDVVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEG 459

Query: 889  SQQLNSNVLTYYVAPIVRDMTKNSFPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQL 1068
             Q++NSNVL YYVAPIVRD+T NSFPQKT +F RV++IL +GFYLCGR+YSFLAFS+NQL
Sbjct: 460  LQRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQL 519

Query: 1069 RDRSAWFFAEGANIKVSDIKSWMGKFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNL 1248
            RD+SAWFF+E  NI V D+KSWMGKFT++N+AKC ARMG CFSST+AT+EVP E+VN +L
Sbjct: 520  RDQSAWFFSEERNISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDL 579

Query: 1249 PDIERNGYVFSDGIGKIT 1302
            PDIERNGYVFSDGIG IT
Sbjct: 580  PDIERNGYVFSDGIGIIT 597



 Score =  486 bits (1251), Expect = e-134
 Identities = 232/318 (72%), Positives = 256/318 (80%)
 Frame = +3

Query: 1428 VVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWTRFQPGFLNRQIIILLSALGVPDTV 1607
            VVACWP K D  RLS+RPSM KFQS HT LEI SWTRFQPGFLNRQII LLS L VPD V
Sbjct: 628  VVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAV 687

Query: 1608 FSLMQATMVHKLCHILENTDIAFDVVTSSCAEQGNTAGMMLGAGFKPQTEPHLRGMLTAI 1787
            F  MQ TMV KL  +  N+D+AFDV+T+SCA+QGN A +ML AGFKP  EPHLRGMLT +
Sbjct: 688  FWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVAAIMLSAGFKPDREPHLRGMLTCV 747

Query: 1788 RAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQCFIQSSIPSLENCFSDQGPGFSGN 1967
            RA Q  DL EKTRIFVP GRWLMGC DELG+LEQGQCFIQ S  SLE CF   G  FS  
Sbjct: 748  RAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEA 807

Query: 1968 KMGLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLHHLVDCLVFPQKGDRPHANEASGSD 2147
            +  LQVIKGTVV+AKNPCLHPGD+R+LEAVD PGLHHL DCLVFPQKG+RPH NEASGSD
Sbjct: 808  EKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSD 867

Query: 2148 LDGDLYFVTWDENLVPPSKRSWIPMDYSPGEIQKLQRAINQSDIVDFFVKNMVNEKLGTI 2327
            LDGDLYFVTWDENL+PPSKRSWIPM Y   E + L R +N  DI++FF KNMVN+ LG I
Sbjct: 868  LDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAI 927

Query: 2328 CNSHVVHADLSDYGAMDE 2381
            CN+HVVHADLS+YGA D+
Sbjct: 928  CNAHVVHADLSEYGATDK 945


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1198

 Score =  598 bits (1543), Expect = e-168
 Identities = 285/435 (65%), Positives = 350/435 (80%), Gaps = 1/435 (0%)
 Frame = +1

Query: 1    DFFIDPFDGSCKINFTKETAFSFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWIME 180
            DF +DPFDG+C+  F++ TAFSFK T+ HAV+KCDFK EF VRDINE++ Y +    ++ 
Sbjct: 160  DFLVDPFDGTCRFCFSRNTAFSFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLL 219

Query: 181  LQLVSSPLLYYRTADDDIHATVPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQG 360
            LQL S+P ++YRTADDDI  +VPFDLLDD+DPWIRTTDFT++  IGRC+SYR+ +PPR G
Sbjct: 220  LQLASAPRVWYRTADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHG 279

Query: 361  KKLKEAIEYLKKWRIIPFDCPAP-KFREEPDFGSPMPDPFFCFHPKEKISFELLFLVNAA 537
             KL++A+++LK+ R+       P + R+EPDFG PM DPFFC H KE I+F++LFLVNA 
Sbjct: 280  PKLRKAVDFLKERRVQEEYLRRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAV 339

Query: 538  IHKGIFSHFQLSDRFFELLRSHEREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPK 717
            +HKGIF+  QLS+ FF+LLR+   EVNVAAL +IY  + PVFD  ++L+  Q  LLKNPK
Sbjct: 340  MHKGIFNQHQLSNDFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPK 399

Query: 718  MIKSFKGLGDSAEVRRLIITPTKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQ 897
              K+ K L D AE+RRL+ITPTKAYCLPPEVELSNR+LRKY++ ADRFLRVTFMDEG Q 
Sbjct: 400  FFKNQKKLDDIAEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQT 459

Query: 898  LNSNVLTYYVAPIVRDMTKNSFPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDR 1077
            +NSN L Y+ APIVR +T  SFPQKT +F RV++IL +GFYLCGR+YSFLAFSSNQLRDR
Sbjct: 460  MNSNALNYFAAPIVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDR 519

Query: 1078 SAWFFAEGANIKVSDIKSWMGKFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDI 1257
            SAWFFAE  NI V  IKSWMGKFT+KN+AKC ARMG CFSST+AT+EVP E+VN +LPDI
Sbjct: 520  SAWFFAEDRNINVMAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDI 579

Query: 1258 ERNGYVFSDGIGKIT 1302
            +RNGY FSDGIG IT
Sbjct: 580  KRNGYDFSDGIGMIT 594



 Score =  489 bits (1259), Expect = e-135
 Identities = 236/318 (74%), Positives = 258/318 (81%)
 Frame = +3

Query: 1428 VVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWTRFQPGFLNRQIIILLSALGVPDTV 1607
            VVACWPE+ D  RLS+R SM KFQS HT+LEI SWTRFQPGFLNRQII LLSAL VPD V
Sbjct: 625  VVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDAV 684

Query: 1608 FSLMQATMVHKLCHILENTDIAFDVVTSSCAEQGNTAGMMLGAGFKPQTEPHLRGMLTAI 1787
            F  MQ  MV KL  +L ++D+AFDV+T+SCAEQGN A +ML AGFKPQ EPHLRGMLT +
Sbjct: 685  FWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCV 744

Query: 1788 RAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQCFIQSSIPSLENCFSDQGPGFSGN 1967
            RA Q   L EK RIFVP GRWLMGC DELGVLEQGQCFIQ S   LENCF   G  FS  
Sbjct: 745  RAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNSYLENCFVKHGSKFSET 804

Query: 1968 KMGLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLHHLVDCLVFPQKGDRPHANEASGSD 2147
            K  LQV+KGTVV+AKNPCLHPGDIRILEAVD PGLHHL DCLVFPQKG+RPHANEASGSD
Sbjct: 805  KKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHANEASGSD 864

Query: 2148 LDGDLYFVTWDENLVPPSKRSWIPMDYSPGEIQKLQRAINQSDIVDFFVKNMVNEKLGTI 2327
            LDGDLYFVTWDENL+PPSKRSWIPM Y   E ++L R +N  DIV+FF KNM NE LG I
Sbjct: 865  LDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQDIVEFFAKNMANENLGAI 924

Query: 2328 CNSHVVHADLSDYGAMDE 2381
            CN+HVV ADLS+YGA+DE
Sbjct: 925  CNAHVVRADLSEYGALDE 942


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  598 bits (1541), Expect = e-168
 Identities = 297/437 (67%), Positives = 348/437 (79%), Gaps = 4/437 (0%)
 Frame = +1

Query: 1    DFFIDPFDGSCKINFTKETAFSFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWIME 180
            DF +DPFDG+CK  FTK+TAFSFKG   HAV+KC+FK EF VR+INEVR   D  S I+ 
Sbjct: 160  DFLVDPFDGTCKFLFTKDTAFSFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILL 219

Query: 181  LQLVSSPLLYYRTADDDIHATVPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQG 360
            LQL SSP +YYRTADDDI  TVPFDLLDD+DPWIRTTDFT +  IGRCNSYRI +PPR G
Sbjct: 220  LQLSSSPFVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYG 279

Query: 361  KKLKEAIEYLKKWRIIPFDCPAPKF----REEPDFGSPMPDPFFCFHPKEKISFELLFLV 528
             KLK+A++YL+  R+   +  +PK+    R+EPDFG PM DPFFC   KE I F ++FLV
Sbjct: 280  AKLKKAMDYLRARRVNVLE-DSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLV 338

Query: 529  NAAIHKGIFSHFQLSDRFFELLRSHEREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLK 708
            NA +HKGI +  QLSD+FF+LLRS ++++N+AAL +I S + PVFD  +RL+ V   LLK
Sbjct: 339  NAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLK 398

Query: 709  NPKMIKSFKGLGDSAEVRRLIITPTKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEG 888
            NPK++KS K L D  EVRRL+ITP+KAYCLPPEVELSNR+LR Y+E +DRFLRVTFMDEG
Sbjct: 399  NPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEG 458

Query: 889  SQQLNSNVLTYYVAPIVRDMTKNSFPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQL 1068
             Q +N+NVL YYVAPIV+ +T NSFPQKT VF RVKTIL DGFYLCGRKYSFLAFSSNQL
Sbjct: 459  MQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQL 518

Query: 1069 RDRSAWFFAEGANIKVSDIKSWMGKFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNL 1248
            RDRSAWFFAE     V  IKSWMGKFT++NVAKC ARMG CFSST+ATVEVP  +V   L
Sbjct: 519  RDRSAWFFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-EL 577

Query: 1249 PDIERNGYVFSDGIGKI 1299
            PDI+RNGY FSDGIGKI
Sbjct: 578  PDIKRNGYDFSDGIGKI 594



 Score =  477 bits (1228), Expect = e-132
 Identities = 230/318 (72%), Positives = 255/318 (80%)
 Frame = +3

Query: 1428 VVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWTRFQPGFLNRQIIILLSALGVPDTV 1607
            VVACWP   D  RLS RPSM KF S HT+LEI SWTRFQPGFLNRQI+ LLSAL VPD +
Sbjct: 625  VVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKI 684

Query: 1608 FSLMQATMVHKLCHILENTDIAFDVVTSSCAEQGNTAGMMLGAGFKPQTEPHLRGMLTAI 1787
            F  MQ +M+ KL  +L +TD+AFDV+ +SCAEQGNTA +ML AGFKPQTEPHL+GMLT I
Sbjct: 685  FWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCI 744

Query: 1788 RAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQCFIQSSIPSLENCFSDQGPGFSGN 1967
            RA QF  L EK RIFVP GRWLMGC DELGVLEQGQCFIQ S PSLENCF   G  FS  
Sbjct: 745  RAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSAQ 804

Query: 1968 KMGLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLHHLVDCLVFPQKGDRPHANEASGSD 2147
            K  L+VIKG V +AKNPCLHPGD+RILEAVD PGL HLVDCLVFPQKGDRPH+NEASGSD
Sbjct: 805  K-NLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSD 863

Query: 2148 LDGDLYFVTWDENLVPPSKRSWIPMDYSPGEIQKLQRAINQSDIVDFFVKNMVNEKLGTI 2327
            LDGDLYFVTW+E L+PPSK+SW PM Y   E + L R +   DI+DFF KNMVNE LG I
Sbjct: 864  LDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAI 923

Query: 2328 CNSHVVHADLSDYGAMDE 2381
            CN+HVVHAD S+YGA+DE
Sbjct: 924  CNAHVVHADRSEYGALDE 941


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  584 bits (1505), Expect = e-164
 Identities = 281/436 (64%), Positives = 340/436 (77%), Gaps = 2/436 (0%)
 Frame = +1

Query: 1    DFFIDPFDGSCKINFTKETAFSFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWIME 180
            DF +DPFDG CK  FT++TAFSFKGT+ HAV++CDFK EF VRDINE++ Y D    ++ 
Sbjct: 160  DFLVDPFDGKCKFCFTRDTAFSFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVIL 219

Query: 181  LQLVSSPLLYYRTADDDIHATVPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQG 360
            LQL S+P ++YRTADDDI   VPFDLLDD+DPWIRTTDFT +  IGRCNSYR+ +PPR G
Sbjct: 220  LQLASAPSVWYRTADDDIEVLVPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHG 279

Query: 361  KKLKEAIEYLKKWRIIPFDCPAPKFR--EEPDFGSPMPDPFFCFHPKEKISFELLFLVNA 534
             KLK A+ +L++ R+   DC         EP++  PM DPFFC H +E + F L+FLVNA
Sbjct: 280  AKLKRALNFLRERRVQE-DCLRRPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNA 338

Query: 535  AIHKGIFSHFQLSDRFFELLRSHEREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNP 714
             +HKGIF+  QLSD FF+LLR+   +VN+AAL +I S K PVFD  +RL+ VQ  LLKNP
Sbjct: 339  VMHKGIFNQHQLSDSFFDLLRNQPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNP 398

Query: 715  KMIKSFKGLGDSAEVRRLIITPTKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQ 894
            K+ +S K L D  E+RRL ITPT+AYCLPPEVELSNR+LR+Y++ AD+FLRVTFMDEG Q
Sbjct: 399  KLFRSSKQLDDIVEIRRLAITPTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQ 458

Query: 895  QLNSNVLTYYVAPIVRDMTKNSFPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRD 1074
             +N+N LTYY APIVRD+T NSF QKT +F RVK+IL DGFYLCGRKYSFLAFSSNQLRD
Sbjct: 459  TMNANTLTYYCAPIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRD 518

Query: 1075 RSAWFFAEGANIKVSDIKSWMGKFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPD 1254
            RSAWFFAE     VS I++WMGKFT++N+AKC ARMG CFSST+ATVEVP  +   +LPD
Sbjct: 519  RSAWFFAEDGKTSVSKIRNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPD 578

Query: 1255 IERNGYVFSDGIGKIT 1302
            IERN Y+FSDGIG IT
Sbjct: 579  IERNNYIFSDGIGMIT 594



 Score =  483 bits (1242), Expect = e-133
 Identities = 234/318 (73%), Positives = 254/318 (79%)
 Frame = +3

Query: 1428 VVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWTRFQPGFLNRQIIILLSALGVPDTV 1607
            VVACWP   D  RLS+R SM KF S HT LEI SWTRFQPGFLNRQII LLS L VPD +
Sbjct: 625  VVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDEI 684

Query: 1608 FSLMQATMVHKLCHILENTDIAFDVVTSSCAEQGNTAGMMLGAGFKPQTEPHLRGMLTAI 1787
            F  MQ  MV KL  +  + D+AFDVVT+SCAEQGNTA +ML AGF P+TEPHL GMLT I
Sbjct: 685  FWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTCI 744

Query: 1788 RAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQCFIQSSIPSLENCFSDQGPGFSGN 1967
            RA Q   L EKTRIFVP GRWLMGC DELGVLE GQCFIQ S PSLE+CF   G  FS +
Sbjct: 745  RAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSLESCFWKHGSRFSES 804

Query: 1968 KMGLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLHHLVDCLVFPQKGDRPHANEASGSD 2147
            K  LQV+KGTVVVAKNPCLHPGDIRILEAVD P LHHL DCLVFPQKGDRPH NEASGSD
Sbjct: 805  KKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSD 864

Query: 2148 LDGDLYFVTWDENLVPPSKRSWIPMDYSPGEIQKLQRAINQSDIVDFFVKNMVNEKLGTI 2327
            LDGDLYFVTWDENL+PPSKRSW+PM Y   E ++L R +N  DI+DFF KNMVNE LG I
Sbjct: 865  LDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAI 924

Query: 2328 CNSHVVHADLSDYGAMDE 2381
            CN+HVVHADLS+YGA+DE
Sbjct: 925  CNAHVVHADLSEYGALDE 942


>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
            gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
            6 [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score =  568 bits (1463), Expect = e-159
 Identities = 272/435 (62%), Positives = 337/435 (77%), Gaps = 1/435 (0%)
 Frame = +1

Query: 1    DFFIDPFDGSCKINFTKETAFSFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWIME 180
            DF +DPFD +CK  F K TAFSFK   +HAV+ CD+K E  VRDI  VR Y +   +++ 
Sbjct: 158  DFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVINCDYKLELLVRDIQTVRQYKNSHGYVLI 217

Query: 181  LQLVSSPLLYYRTADDDIHATVPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQG 360
            LQL SSP ++YRTADDDIH T+P DLLDD+DPWIRTTDFT    IGRC+SYR+ + PR  
Sbjct: 218  LQLASSPRVWYRTADDDIHDTIPVDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYE 277

Query: 361  KKLKEAIEYLKKWRIIPFDCP-APKFREEPDFGSPMPDPFFCFHPKEKISFELLFLVNAA 537
            KKL  A+EYL+  R+        P+ R EP FG P+ D FFC H KE ISFE++FLVN+ 
Sbjct: 278  KKLTTALEYLRMRRVQEERVRWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSV 337

Query: 538  IHKGIFSHFQLSDRFFELLRSHEREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPK 717
            +H+G+F+ FQL++RFF+LLR+  ++VN+A+L ++ + K PVFD  +RL+ VQ  +LKNPK
Sbjct: 338  LHRGVFNQFQLTERFFDLLRNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWILKNPK 397

Query: 718  MIKSFKGLGDSAEVRRLIITPTKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQ 897
            ++   +   D +E+RRL+ITPT+AYCLPPEVELSNR+LRKYR  A+RFLRVTFMDE  Q 
Sbjct: 398  LLGGHEQSEDISEIRRLVITPTRAYCLPPEVELSNRVLRKYRAVAERFLRVTFMDESMQT 457

Query: 898  LNSNVLTYYVAPIVRDMTKNSFPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDR 1077
            +NSNVL+Y+VAPIV+D+T +SF QKT VF RVK+IL DGF LCGRKYSFLAFS+NQLRD 
Sbjct: 458  INSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDS 517

Query: 1078 SAWFFAEGANIKVSDIKSWMGKFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDI 1257
            SAWFFAE    +VSDIK+WMGKF DKNVAKC ARMG+CFSST+ATV+V   +VN  LPDI
Sbjct: 518  SAWFFAEDGKTRVSDIKAWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPNEVNTELPDI 577

Query: 1258 ERNGYVFSDGIGKIT 1302
            ERNGYVFSDGIG IT
Sbjct: 578  ERNGYVFSDGIGTIT 592



 Score =  454 bits (1169), Expect = e-125
 Identities = 214/318 (67%), Positives = 253/318 (79%)
 Frame = +3

Query: 1428 VVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWTRFQPGFLNRQIIILLSALGVPDTV 1607
            VVA WP K D  RL++R SM KF SKHT+LEI SWTRFQPGFLNRQII LLS LGVPD +
Sbjct: 624  VVARWPSKGDGIRLALRDSMKKFNSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEI 683

Query: 1608 FSLMQATMVHKLCHILENTDIAFDVVTSSCAEQGNTAGMMLGAGFKPQTEPHLRGMLTAI 1787
            F  MQ +M++KL  IL++TD+AF+V+T+SCAEQGNTA +ML AGFKP+TEPHLRGML+++
Sbjct: 684  FWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSV 743

Query: 1788 RAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQCFIQSSIPSLENCFSDQGPGFSGN 1967
            R  Q   L EK+RIFV  GRWLMGC DE G LE GQCFIQ S PS+ENCFS  G  F   
Sbjct: 744  RIAQLWGLREKSRIFVTSGRWLMGCLDEAGKLEHGQCFIQVSKPSIENCFSKHGSRFKET 803

Query: 1968 KMGLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLHHLVDCLVFPQKGDRPHANEASGSD 2147
            K  L+V+KG V +AKNPCLHPGD+RILEAVD P LHH+ DCL+FP+KGDRPH NEASGSD
Sbjct: 804  KTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDCLIFPKKGDRPHTNEASGSD 863

Query: 2148 LDGDLYFVTWDENLVPPSKRSWIPMDYSPGEIQKLQRAINQSDIVDFFVKNMVNEKLGTI 2327
            LDGDLYFV WD+ L+PP+++S+  M Y   E + L RA+N  DI+DFF +NM NE LGTI
Sbjct: 864  LDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKTLGRAVNHQDIIDFFARNMANEHLGTI 923

Query: 2328 CNSHVVHADLSDYGAMDE 2381
            CN+HVVHAD S+YGAMDE
Sbjct: 924  CNAHVVHADRSEYGAMDE 941