BLASTX nr result
ID: Panax25_contig00053593
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax25_contig00053593
(800 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAF65309.1 reverse transcriptase [Picea glauca] 189 5e-53
AFB73911.1 polyprotein [Citrus sinensis] 171 4e-48
KYP53032.1 Retrovirus-related Pol polyprotein from transposon TN... 167 1e-47
KYP42748.1 Retrovirus-related Pol polyprotein from transposon TN... 167 1e-47
KYP67664.1 Retrovirus-related Pol polyprotein from transposon TN... 167 1e-47
KYP38095.1 Retrovirus-related Pol polyprotein from transposon TN... 167 1e-47
AFB73912.1 polyprotein [Citrus sinensis] 167 2e-47
KYP36645.1 Retrovirus-related Pol polyprotein from transposon TN... 166 2e-47
ACL97384.1 Gag-Pol polyprotein [Medicago truncatula] 164 3e-46
ACL97386.1 Gag-Pol polyprotein [Medicago truncatula] 164 3e-46
ACL97383.1 Gag-Pol polyprotein [Medicago truncatula] 164 3e-46
ACL97387.1 Gag-Pol polyprotein [Lotus japonicus] 163 7e-46
ACL97385.1 Gag-Pol polyprotein [Medicago truncatula] 162 7e-46
BAD34493.1 Gag-Pol [Ipomoea batatas] 160 2e-45
ABG22119.1 polyprotein, partial [Cynara cardunculus var. scolymus] 162 3e-44
XP_009787759.1 PREDICTED: uncharacterized protein LOC104235647 [... 168 7e-44
KYP42039.1 Retrovirus-related Pol polyprotein from transposon TN... 160 2e-43
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN... 160 5e-43
KYP53356.1 Retrovirus-related Pol polyprotein from transposon TN... 160 5e-43
KZV22485.1 hypothetical protein F511_19705 [Dorcoceras hygrometr... 160 5e-43
>AAF65309.1 reverse transcriptase [Picea glauca]
Length = 542
Score = 189 bits (480), Expect = 5e-53
Identities = 103/204 (50%), Positives = 132/204 (64%), Gaps = 23/204 (11%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDMLL+ NN I+ VKS L+ +FDMKDLG +KY+
Sbjct: 266 LYVDDMLLVGNNMDVIKEVKSQLSSKFDMKDLGAANFILGMDIKRDRANRKLWLNQRKYV 325
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
E +L++FN+ G K V+ + LSADQCPK +EEEE+M ++PYASAV SLMY MVCTR
Sbjct: 326 ETILQRFNIHGSKPVKVPIPIGVNLSADQCPKIQEEEEDMSHVPYASAVGSLMYAMVCTR 385
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGK-GD*RNFEMVGFVDA 473
PDI AVG LSRYMS GKEHWT +KRV++YL + L +G+ G R ++ GFVDA
Sbjct: 386 PDIAHAVGFLSRYMSKLGKEHWTTVKRVFRYLHGTTSYGLCYQGRSGLDRVVDIHGFVDA 445
Query: 474 D*SGDVDSMKSTNGYVFNLSDGHV 545
D GD+D ++ST+GYVFNL G +
Sbjct: 446 DWVGDLDHIRSTSGYVFNLFGGAI 469
>AFB73911.1 polyprotein [Citrus sinensis]
Length = 1309
Score = 171 bits (434), Expect(3) = 4e-48
Identities = 91/203 (44%), Positives = 123/203 (60%), Gaps = 22/203 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML+ NK IQ +K+ LA +F+MKDLG K Y+
Sbjct: 988 LYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNMKIWLSQKNYL 1047
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+++L++FNM CK + T + KLS+ CP ++ E +EM +PYASAV SLM+ M+CTR
Sbjct: 1048 KKILRRFNMQDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTR 1107
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVGV+SRYM+N G EHW A+KR+ +Y+ D AL G F + G+VD+D
Sbjct: 1108 PDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCYGGS----EFTVRGYVDSD 1163
Query: 477 *SGDVDSMKSTNGYVFNLSDGHV 545
+GD+D KST GYVF L+ V
Sbjct: 1164 FAGDLDKRKSTTGYVFTLAGAAV 1186
Score = 37.7 bits (86), Expect(3) = 4e-48
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A K+AI I+RL + G K + + + CDS S H
Sbjct: 1201 TEAEYMAATQACKKAIWIQRLLEELGHKQQKILVFCDSQSALH 1243
Score = 32.0 bits (71), Expect(3) = 4e-48
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI + YHF+
Sbjct: 1242 LHIARNPAFHSRTKHIGVQYHFV 1264
>KYP53032.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 167 bits (424), Expect(3) = 1e-47
Identities = 91/206 (44%), Positives = 123/206 (59%), Gaps = 22/206 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML++ NK IQ +K+ LA +FDMKDLG K Y+
Sbjct: 984 LYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYL 1043
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+VL++FNM CK + T + KLS+ P ++ E EM +PYASAV SLMY M+CTR
Sbjct: 1044 LKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1103
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVG +SR+M++ G+EHW+ +KR+ +Y+ D AL G F + G+VD+D
Sbjct: 1104 PDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGS----EFVVRGYVDSD 1159
Query: 477 *SGDVDSMKSTNGYVFNLSDGHVKAL 554
+GD+D KST GYVF L+ G V L
Sbjct: 1160 FAGDLDKRKSTTGYVFTLAGGAVSWL 1185
Score = 40.0 bits (92), Expect(3) = 1e-47
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI I+RL + G K + + + CDS S H
Sbjct: 1197 TEAEYMAATQACKEAIWIQRLLEELGHKQEKITVYCDSQSALH 1239
Score = 32.0 bits (71), Expect(3) = 1e-47
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI + YHF+
Sbjct: 1238 LHIARNPAFHSRTKHIGVQYHFV 1260
>KYP42748.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 167 bits (423), Expect(3) = 1e-47
Identities = 91/206 (44%), Positives = 123/206 (59%), Gaps = 22/206 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML++ NK IQ +K+ LA +FDMKDLG K Y+
Sbjct: 984 LYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYL 1043
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+VL++FNM CK + T + KLS+ P ++ E EM +PYASAV SLMY M+CTR
Sbjct: 1044 LKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1103
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVG +SR+M++ G+EHW+ +KR+ +Y+ D AL G F + G+VD+D
Sbjct: 1104 PDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGS----EFFVRGYVDSD 1159
Query: 477 *SGDVDSMKSTNGYVFNLSDGHVKAL 554
+GD+D KST GYVF L+ G V L
Sbjct: 1160 FAGDLDKRKSTTGYVFTLAGGAVSWL 1185
Score = 40.0 bits (92), Expect(3) = 1e-47
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI I+RL + G K + + + CDS S H
Sbjct: 1197 TEAEYMAATQACKEAIWIQRLLEELGHKQEKITVYCDSQSALH 1239
Score = 32.3 bits (72), Expect(3) = 1e-47
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI I YHF+
Sbjct: 1238 LHIARNPAFHSRTKHIGIQYHFV 1260
>KYP67664.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 167 bits (423), Expect(3) = 1e-47
Identities = 91/206 (44%), Positives = 123/206 (59%), Gaps = 22/206 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML++ NK IQ +K+ LA +FDMKDLG K Y+
Sbjct: 935 LYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYL 994
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+VL++FNM CK + T + KLS+ P ++ E EM +PYASAV SLMY M+CTR
Sbjct: 995 LKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1054
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVG +SR+M++ G+EHW+ +KR+ +Y+ D AL G F + G+VD+D
Sbjct: 1055 PDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGS----EFFVRGYVDSD 1110
Query: 477 *SGDVDSMKSTNGYVFNLSDGHVKAL 554
+GD+D KST GYVF L+ G V L
Sbjct: 1111 FAGDLDKRKSTTGYVFTLAGGAVSWL 1136
Score = 40.0 bits (92), Expect(3) = 1e-47
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI I+RL + G K + + + CDS S H
Sbjct: 1148 TEAEYMAATQACKEAIWIQRLLEELGHKQEKITVYCDSQSALH 1190
Score = 32.3 bits (72), Expect(3) = 1e-47
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI I YHF+
Sbjct: 1189 LHIARNPAFHSRTKHIGIQYHFV 1211
>KYP38095.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 167 bits (423), Expect(3) = 1e-47
Identities = 91/206 (44%), Positives = 123/206 (59%), Gaps = 22/206 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML++ NK IQ +K+ LA +FDMKDLG K Y+
Sbjct: 935 LYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYL 994
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+VL++FNM CK + T + KLS+ P ++ E EM +PYASAV SLMY M+CTR
Sbjct: 995 LKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1054
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVG +SR+M++ G+EHW+ +KR+ +Y+ D AL G F + G+VD+D
Sbjct: 1055 PDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGS----EFFVRGYVDSD 1110
Query: 477 *SGDVDSMKSTNGYVFNLSDGHVKAL 554
+GD+D KST GYVF L+ G V L
Sbjct: 1111 FAGDLDKRKSTTGYVFTLAGGAVSWL 1136
Score = 40.0 bits (92), Expect(3) = 1e-47
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI I+RL + G K + + + CDS S H
Sbjct: 1148 TEAEYMAATQACKEAIWIQRLLEELGHKQEKITVYCDSQSALH 1190
Score = 32.3 bits (72), Expect(3) = 1e-47
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI I YHF+
Sbjct: 1189 LHIARNPAFHSRTKHIGIQYHFV 1211
>AFB73912.1 polyprotein [Citrus sinensis]
Length = 1309
Score = 167 bits (423), Expect(3) = 2e-47
Identities = 89/203 (43%), Positives = 122/203 (60%), Gaps = 22/203 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML+ NK IQ +K+ LA +F+MKDLG K Y+
Sbjct: 988 LYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNRKIWLSQKNYL 1047
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+++L++FNM CK + T + KLS+ CP ++ E +EM +PYASAV SLM+ M+CTR
Sbjct: 1048 KKILRRFNMQDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTR 1107
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVG +SRYM+N G EHW A+KR+ +Y+ + AL G F + G+VD+D
Sbjct: 1108 PDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCYGGS----EFTVRGYVDSD 1163
Query: 477 *SGDVDSMKSTNGYVFNLSDGHV 545
+GD+D KST GYVF L+ V
Sbjct: 1164 FAGDLDKRKSTTGYVFTLAGAAV 1186
Score = 39.7 bits (91), Expect(3) = 2e-47
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI I+RL + G K + + + CDS S H
Sbjct: 1201 TEAEYMAATQACKEAIWIQRLLEELGHKQQKIPVFCDSQSALH 1243
Score = 32.0 bits (71), Expect(3) = 2e-47
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI + YHF+
Sbjct: 1242 LHIARNPAFHSRTKHIGVQYHFV 1264
>KYP36645.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 166 bits (420), Expect(3) = 2e-47
Identities = 90/206 (43%), Positives = 123/206 (59%), Gaps = 22/206 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML++ NK IQ +K+ LA +FDMKDLG + Y+
Sbjct: 935 LYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDKKDRKIWLSQRNYL 994
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+VL++FNM CK + T + KLS+ P ++ E EM +PYASAV SLMY M+CTR
Sbjct: 995 LKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1054
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVG +SR+M++ G+EHW+ +KR+ +Y+ D AL G F + G+VD+D
Sbjct: 1055 PDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGS----EFFVRGYVDSD 1110
Query: 477 *SGDVDSMKSTNGYVFNLSDGHVKAL 554
+GD+D KST GYVF L+ G V L
Sbjct: 1111 FAGDLDKRKSTTGYVFTLAGGAVSWL 1136
Score = 40.0 bits (92), Expect(3) = 2e-47
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI I+RL + G K + + + CDS S H
Sbjct: 1148 TEAEYMAATQACKEAIWIQRLLEELGHKQEKITVYCDSQSALH 1190
Score = 32.3 bits (72), Expect(3) = 2e-47
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI I YHF+
Sbjct: 1189 LHIARNPAFHSRTKHIGIQYHFV 1211
>ACL97384.1 Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 164 bits (415), Expect(3) = 3e-46
Identities = 90/206 (43%), Positives = 121/206 (58%), Gaps = 22/206 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML++ NK +Q +K+ LA +FDMKDLG K Y+
Sbjct: 984 LYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYL 1043
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+VL++FNM CK + T + KLS+ P ++ E EM +PYASAV SLMY M+CTR
Sbjct: 1044 RKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1103
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVGV+SR+M++ GKEHW A+KR+ +Y+ A+ G + G+VD+D
Sbjct: 1104 PDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGS----ELTVRGYVDSD 1159
Query: 477 *SGDVDSMKSTNGYVFNLSDGHVKAL 554
+GD D KST GYVF L+ G V L
Sbjct: 1160 FAGDHDKRKSTTGYVFTLAGGAVSWL 1185
Score = 38.9 bits (89), Expect(3) = 3e-46
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI ++RL + G K + + + CDS S H
Sbjct: 1197 TEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALH 1239
Score = 32.0 bits (71), Expect(3) = 3e-46
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI + YHF+
Sbjct: 1238 LHIARNPAFHSRTKHIGVQYHFV 1260
>ACL97386.1 Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 164 bits (415), Expect(3) = 3e-46
Identities = 90/206 (43%), Positives = 121/206 (58%), Gaps = 22/206 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML++ NK +Q +K+ LA +FDMKDLG K Y+
Sbjct: 984 LYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYL 1043
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+VL++FNM CK + T + KLS+ P ++ E EM +PYASAV SLMY M+CTR
Sbjct: 1044 RKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1103
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVGV+SR+M++ GKEHW A+KR+ +Y+ A+ G + G+VD+D
Sbjct: 1104 PDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGS----ELTVWGYVDSD 1159
Query: 477 *SGDVDSMKSTNGYVFNLSDGHVKAL 554
+GD D KST GYVF L+ G V L
Sbjct: 1160 FAGDHDKRKSTTGYVFTLAGGAVSWL 1185
Score = 38.9 bits (89), Expect(3) = 3e-46
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI ++RL + G K + + + CDS S H
Sbjct: 1197 TEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALH 1239
Score = 32.0 bits (71), Expect(3) = 3e-46
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI + YHF+
Sbjct: 1238 LHIARNPAFHSRTKHIGVQYHFV 1260
>ACL97383.1 Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 164 bits (415), Expect(3) = 3e-46
Identities = 90/206 (43%), Positives = 121/206 (58%), Gaps = 22/206 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML++ NK +Q +K+ LA +FDMKDLG K Y+
Sbjct: 984 LYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYL 1043
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+VL++FNM CK + T + KLS+ P ++ E EM +PYASAV SLMY M+CTR
Sbjct: 1044 RKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1103
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVGV+SR+M++ GKEHW A+KR+ +Y+ A+ G + G+VD+D
Sbjct: 1104 PDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGS----ELTVRGYVDSD 1159
Query: 477 *SGDVDSMKSTNGYVFNLSDGHVKAL 554
+GD D KST GYVF L+ G V L
Sbjct: 1160 FAGDHDKRKSTTGYVFTLAGGAVSWL 1185
Score = 38.9 bits (89), Expect(3) = 3e-46
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI ++RL + G K + + + CDS S H
Sbjct: 1197 TEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALH 1239
Score = 32.0 bits (71), Expect(3) = 3e-46
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI + YHF+
Sbjct: 1238 LHIARNPAFHSRTKHIGVQYHFV 1260
>ACL97387.1 Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 163 bits (413), Expect(3) = 7e-46
Identities = 90/206 (43%), Positives = 121/206 (58%), Gaps = 22/206 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML++ NK +Q +K+ LA +FDMKDLG K Y+
Sbjct: 984 LYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYL 1043
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
++VL++FNM + T + KLS+ P S+ E EM +PYASAV SLMY M+CTR
Sbjct: 1044 QKVLRRFNMQDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYAMICTR 1103
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVG +SR+M++ GKEHW A+KR+ +Y+ AL G F + G+VD+D
Sbjct: 1104 PDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGGS----EFTIRGYVDSD 1159
Query: 477 *SGDVDSMKSTNGYVFNLSDGHVKAL 554
+GD+D KST GYVF L+ G V L
Sbjct: 1160 FAGDLDKRKSTTGYVFTLAGGAVSWL 1185
Score = 38.1 bits (87), Expect(3) = 7e-46
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI +RL + G K + + + CDS S H
Sbjct: 1197 TEAEYMAATQACKEAIWTQRLLEELGHKQQKITVYCDSPSALH 1239
Score = 32.0 bits (71), Expect(3) = 7e-46
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI + YHF+
Sbjct: 1238 LHIARNPAFHSRTKHIGVQYHFV 1260
>ACL97385.1 Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 162 bits (411), Expect(3) = 7e-46
Identities = 89/206 (43%), Positives = 121/206 (58%), Gaps = 22/206 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DD+L++ NK +Q +K+ LA +FDMKDLG K Y+
Sbjct: 984 LYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYL 1043
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+VL++FNM CK + T + KLS+ P ++ E EM +PYASAV SLMY M+CTR
Sbjct: 1044 RKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1103
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVGV+SR+M++ GKEHW A+KR+ +Y+ A+ G + G+VD+D
Sbjct: 1104 PDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGS----ELTVRGYVDSD 1159
Query: 477 *SGDVDSMKSTNGYVFNLSDGHVKAL 554
+GD D KST GYVF L+ G V L
Sbjct: 1160 FAGDHDKRKSTTGYVFTLTGGAVSWL 1185
Score = 38.9 bits (89), Expect(3) = 7e-46
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI ++RL + G K + + + CDS S H
Sbjct: 1197 TEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALH 1239
Score = 32.0 bits (71), Expect(3) = 7e-46
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI + YHF+
Sbjct: 1238 LHIARNPAFHSRTKHIGVQYHFV 1260
>BAD34493.1 Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 160 bits (405), Expect(3) = 2e-45
Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 22/203 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML+ NK I +K+ LA +F+MKDLG K Y+
Sbjct: 977 LYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQIHRDRGNRKIWLSQKNYL 1036
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+++L +F+M CK + T + K+S+ P ++E EM +PYASAV SLM+ M+CTR
Sbjct: 1037 KKILSRFSMQDCKSISTPLPINLKVSSSMSPSNEEGRMEMSRVPYASAVGSLMFAMICTR 1096
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVGV+SRYM+N G+EHW +KR+ +Y+ D AL G +F + G+VD+D
Sbjct: 1097 PDIAQAVGVVSRYMANPGREHWNCVKRILRYIKGTSDVALCYGGS----DFIINGYVDSD 1152
Query: 477 *SGDVDSMKSTNGYVFNLSDGHV 545
+GD+D KST GYVF ++ G V
Sbjct: 1153 YAGDLDKSKSTTGYVFKVAGGAV 1175
Score = 38.9 bits (89), Expect(3) = 2e-45
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEY+A ASKEAI ++ L + G K + V L CDS S H
Sbjct: 1190 TEAEYVAATQASKEAIWLKMLLEELGHKQEFVSLFCDSQSALH 1232
Score = 32.7 bits (73), Expect(3) = 2e-45
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L L +NP HS +KHI + YHFI
Sbjct: 1231 LHLARNPAFHSRTKHIRVQYHFI 1253
>ABG22119.1 polyprotein, partial [Cynara cardunculus var. scolymus]
Length = 358
Score = 162 bits (409), Expect = 3e-44
Identities = 88/198 (44%), Positives = 117/198 (59%), Gaps = 22/198 (11%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML+ NK+ IQ VK L +F+MKDLG + Y+
Sbjct: 85 LYVDDMLIASKNKEDIQLVKDQLNTEFEMKDLGKARKIFGIEISRDRKARTLTLSQRSYV 144
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
E+VLK+FNM G K V T +A KLSA QCP S EE+E M +PY+SAV SLMY M+CTR
Sbjct: 145 EKVLKRFNMYGAKTVNTPIAAHFKLSACQCPDSNEEKEYMSRVPYSSAVGSLMYAMICTR 204
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PD+ AV ++SRYM+N G+EHW A++ V +YL D+ + D + G+VD+D
Sbjct: 205 PDLAYAVSMVSRYMANPGREHWKAVQWVLRYLSGTRDYCMCFGTSRD----GVQGYVDSD 260
Query: 477 *SGDVDSMKSTNGYVFNL 530
GD+D +S GYVF +
Sbjct: 261 YGGDLDGRRSLTGYVFTM 278
>XP_009787759.1 PREDICTED: uncharacterized protein LOC104235647 [Nicotiana
sylvestris]
Length = 985
Score = 168 bits (426), Expect = 7e-44
Identities = 93/196 (47%), Positives = 119/196 (60%), Gaps = 20/196 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*--------------------KKYIEE 122
LY DDML+ NN I ++K LL+ +FDMKDLG K+YIE
Sbjct: 349 LYVDDMLIAANNITEINALKKLLSKEFDMKDLGAAKKILGMEISREDDVVHLSQKRYIER 408
Query: 123 VLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTRPD 302
VL++FNM CK V T +A KLS Q P+S++E E M IPYASAV S+MY MVCTRPD
Sbjct: 409 VLERFNMQTCKPVSTPLAPHFKLSESQMPQSEDEVEHMSKIPYASAVGSIMYAMVCTRPD 468
Query: 303 IIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD*S 482
I Q+V V+SRYMSN GK HW A+K + +YL L R G ++G+VD+D +
Sbjct: 469 IAQSVSVVSRYMSNPGKRHWEAVKWILRYLKGASGVGLTFRKSG--TGISILGYVDSDYA 526
Query: 483 GDVDSMKSTNGYVFNL 530
GD+D +ST GY+F L
Sbjct: 527 GDLDRRRSTTGYIFTL 542
>KYP42039.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 394
Score = 160 bits (406), Expect = 2e-43
Identities = 88/204 (43%), Positives = 122/204 (59%), Gaps = 23/204 (11%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML+ +K I +K+ L +F+MK+LG +KYI
Sbjct: 70 LYVDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYI 129
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
E +L +FNM CK V T +A KLS+D CP++KEE E M ++PYASAV SLMY MVCTR
Sbjct: 130 ERLLDRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTR 189
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHL-RGKGD*RNFEMVGFVDA 473
PD+ AV ++SRYM N GK+HW+A+K +++YL + L R K N + GFVD+
Sbjct: 190 PDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNN--VAGFVDS 247
Query: 474 D*SGDVDSMKSTNGYVFNLSDGHV 545
D GD+D +S +GY+F L + +
Sbjct: 248 DYGGDLDRRRSLSGYIFTLCNSAI 271
>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1032
Score = 160 bits (406), Expect(3) = 5e-43
Identities = 88/204 (43%), Positives = 122/204 (59%), Gaps = 23/204 (11%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML+ +K I +K+ L +F+MK+LG +KYI
Sbjct: 708 LYVDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYI 767
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
E +L +FNM CK V T +A KLS+D CP++KEE E M ++PYASAV SLMY MVCTR
Sbjct: 768 ERLLDRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTR 827
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHL-RGKGD*RNFEMVGFVDA 473
PD+ AV ++SRYM N GK+HW+A+K +++YL + L R K N + GFVD+
Sbjct: 828 PDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNN--VAGFVDS 885
Query: 474 D*SGDVDSMKSTNGYVFNLSDGHV 545
D GD+D +S +GY+F L + +
Sbjct: 886 DYGGDLDRRRSLSGYIFTLCNSAI 909
Score = 32.3 bits (72), Expect(3) = 5e-43
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTHFNEES 702
TEAEY++ KEA+ IR L + G + + CDS S H + S
Sbjct: 924 TEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHLTKNS 971
Score = 30.8 bits (68), Expect(3) = 5e-43
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 689 LTKNPTVHSWSKHIDIHYHFI 751
LTKN H +KHID+ +HFI
Sbjct: 967 LTKNSRYHDKTKHIDVKHHFI 987
>KYP53356.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 503
Score = 160 bits (406), Expect(3) = 5e-43
Identities = 88/204 (43%), Positives = 122/204 (59%), Gaps = 23/204 (11%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML+ +K I +K+ L +F+MK+LG +KYI
Sbjct: 179 LYVDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYI 238
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
E +L +FNM CK V T +A KLS+D CP++KEE E M ++PYASAV SLMY MVCTR
Sbjct: 239 ERLLDRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTR 298
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHL-RGKGD*RNFEMVGFVDA 473
PD+ AV ++SRYM N GK+HW+A+K +++YL + L R K N + GFVD+
Sbjct: 299 PDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNN--VAGFVDS 356
Query: 474 D*SGDVDSMKSTNGYVFNLSDGHV 545
D GD+D +S +GY+F L + +
Sbjct: 357 DYGGDLDRRRSLSGYIFTLCNSAI 380
Score = 32.3 bits (72), Expect(3) = 5e-43
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTHFNEES 702
TEAEY++ KEA+ IR L + G + + CDS S H + S
Sbjct: 395 TEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHLTKNS 442
Score = 30.8 bits (68), Expect(3) = 5e-43
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 689 LTKNPTVHSWSKHIDIHYHFI 751
LTKN H +KHID+ +HFI
Sbjct: 438 LTKNSRYHDKTKHIDVKHHFI 458
>KZV22485.1 hypothetical protein F511_19705 [Dorcoceras hygrometricum]
Length = 425
Score = 160 bits (405), Expect = 5e-43
Identities = 88/203 (43%), Positives = 118/203 (58%), Gaps = 22/203 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*KK----------------------YI 116
LY DDML+ NK +Q +K+ LA +FDMKDLG Y+
Sbjct: 178 LYVDDMLVAGPNKDRVQELKAQLAREFDMKDLGPANKILGMQVHRDRSNRKIWLSQTNYL 237
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
++ L +FNM K + T + KLS+D CP ++ E EM IPYASAV SLM+ M+CTR
Sbjct: 238 QKFLHRFNMQDSKPISTPLPVNFKLSSDMCPSNEAERMEMSRIPYASAVGSLMFAMICTR 297
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVG +SRYM+N G+EHW+ +KR+ +Y+ + AL G + G+VD+D
Sbjct: 298 PDIAQAVGAVSRYMANPGREHWSTVKRILRYIKGTSNAALCFGGS----YLTLRGYVDSD 353
Query: 477 *SGDVDSMKSTNGYVFNLSDGHV 545
+GD D KST GYVF L+ G V
Sbjct: 354 YAGDPDKRKSTTGYVFTLAGGAV 376