BLASTX nr result
ID: Panax25_contig00052280
seq
BLASTX 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Panax25_contig00052280 (413 letters) Database: ./nr 115,041,592 sequences; 42,171,959,267 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CBI32830.3 unnamed protein product, partial [Vitis vinifera] 54 6e-06 XP_019077463.1 PREDICTED: mediator of RNA polymerase II transcri... 54 7e-06 XP_010653646.1 PREDICTED: mediator of RNA polymerase II transcri... 54 7e-06 >CBI32830.3 unnamed protein product, partial [Vitis vinifera] Length = 407 Score = 54.3 bits (129), Expect = 6e-06 Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 14/83 (16%) Frame = +1 Query: 196 NIATTYQQPLTEQSSDCGL-QQQRMVGS---------HQHSLHIVQQPVDTLPRQNL--- 336 N++ ++QQPL QS+ G+ QQQ++VG HQHS++I+QQ ++N+ Sbjct: 263 NMSNSFQQPLNPQSNVSGVQQQQKIVGPQSDVLNMQVHQHSVNILQQAETNTAQKNVPWT 322 Query: 337 -EPEQLHQVLGSRYPNNSLEEAS 402 + QLH++LGS+ NNSL E+S Sbjct: 323 SQTLQLHKLLGSQQKNNSLPESS 345 >XP_019077463.1 PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X2 [Vitis vinifera] Length = 945 Score = 54.3 bits (129), Expect = 7e-06 Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 14/83 (16%) Frame = +1 Query: 196 NIATTYQQPLTEQSSDCGL-QQQRMVGS---------HQHSLHIVQQPVDTLPRQNL--- 336 N++ ++QQPL QS+ G+ QQQ++VG HQHS++I+QQ ++N+ Sbjct: 114 NMSNSFQQPLNPQSNVSGVQQQQKIVGPQSDVLNMQVHQHSVNILQQAETNTAQKNVPWT 173 Query: 337 -EPEQLHQVLGSRYPNNSLEEAS 402 + QLH++LGS+ NNSL E+S Sbjct: 174 SQTLQLHKLLGSQQKNNSLPESS 196 >XP_010653646.1 PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Vitis vinifera] Length = 1095 Score = 54.3 bits (129), Expect = 7e-06 Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 14/83 (16%) Frame = +1 Query: 196 NIATTYQQPLTEQSSDCGL-QQQRMVGS---------HQHSLHIVQQPVDTLPRQNL--- 336 N++ ++QQPL QS+ G+ QQQ++VG HQHS++I+QQ ++N+ Sbjct: 264 NMSNSFQQPLNPQSNVSGVQQQQKIVGPQSDVLNMQVHQHSVNILQQAETNTAQKNVPWT 323 Query: 337 -EPEQLHQVLGSRYPNNSLEEAS 402 + QLH++LGS+ NNSL E+S Sbjct: 324 SQTLQLHKLLGSQQKNNSLPESS 346