BLASTX nr result
ID: Panax25_contig00047682
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax25_contig00047682
(517 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KZV23636.1 hypothetical protein F511_34337 [Dorcoceras hygrometr... 58 4e-15
KYP58848.1 Retrovirus-related Pol polyprotein from transposon TN... 52 9e-12
AAT38766.2 Polyprotein, putative [Solanum demissum] 50 3e-11
CAN66873.1 hypothetical protein VITISV_021427 [Vitis vinifera] 51 2e-10
CAN76565.1 hypothetical protein VITISV_010942 [Vitis vinifera] 47 2e-10
XP_008388960.1 PREDICTED: DNA polymerase zeta catalytic subunit-... 57 6e-10
JAU56143.1 Retrovirus-related Pol polyprotein from transposon TN... 55 3e-09
JAU33890.1 Retrovirus-related Pol polyprotein from transposon TN... 55 4e-09
ABF95851.1 retrotransposon protein, putative, Ty1-copia subclass... 63 6e-09
ABW81017.1 gag-pol polymerase, partial [Arabidopsis lyrata subsp... 55 6e-09
CAN80619.1 hypothetical protein VITISV_005064 [Vitis vinifera] 45 8e-09
ABI34306.1 Polyprotein, putative [Solanum demissum] 52 2e-08
KYP72325.1 Retrovirus-related Pol polyprotein from transposon TN... 62 4e-08
KYP33726.1 Retrovirus-related Pol polyprotein from transposon TN... 62 4e-08
KYP31709.1 Retrovirus-related Pol polyprotein from transposon TN... 59 6e-08
CAN66576.1 hypothetical protein VITISV_016964 [Vitis vinifera] 57 8e-08
CAN66637.1 hypothetical protein VITISV_011340 [Vitis vinifera] 57 2e-07
AAL75486.1 putative Fourf gag/pol protein [Zea mays] 55 2e-07
CAN73567.1 hypothetical protein VITISV_003451 [Vitis vinifera] 57 2e-07
AAU90333.1 Putative gag and pol polyprotein, identical [Solanum ... 49 2e-07
>KZV23636.1 hypothetical protein F511_34337 [Dorcoceras hygrometricum]
Length = 739
Score = 57.8 bits (138), Expect(3) = 4e-15
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = +2
Query: 203 GVLAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRFLVVKSQISEI 343
G LAK +P PKR K+ PKT IFIGYAQNS+A RFLV KS+ +I
Sbjct: 638 GCLAKVVIPTPKRVKIGPKTVDCIFIGYAQNSSAYRFLVYKSEFPDI 684
Score = 47.8 bits (112), Expect(3) = 4e-15
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GCFSK 216
+LT+ ++LN+V +K K P+ELWK R P +L+V GC +K
Sbjct: 601 VLTANYLLNKVPLKKQNKIPYELWKGRPPSYKYLRVWGCLAK 642
Score = 22.3 bits (46), Expect(3) = 4e-15
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +3
Query: 351 NTIIEAREATFFEN 392
NTI+E+R A+FF++
Sbjct: 687 NTIMESRNASFFKH 700
>KYP58848.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 396
Score = 52.0 bits (123), Expect(2) = 9e-12
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*G 204
+ T+C LNR+ KN++KTP+ELWK R P L +LKV G
Sbjct: 178 LFTACHSLNRIPYKNSDKTPYELWKNRKPNLKYLKVWG 215
Score = 45.1 bits (105), Expect(2) = 9e-12
Identities = 21/49 (42%), Positives = 35/49 (71%)
Frame = +2
Query: 203 GVLAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRFLVVKSQISEISN 349
GVL +R +P K++K+ PKT +F+GY+ +S R LV+ S++++ISN
Sbjct: 217 GVL-QRCIPINKKRKISPKTVDCVFLGYSLHSTTYRILVINSEVAKISN 264
>AAT38766.2 Polyprotein, putative [Solanum demissum]
Length = 1355
Score = 49.7 bits (117), Expect(2) = 3e-11
Identities = 28/50 (56%), Positives = 31/50 (62%)
Frame = +2
Query: 194 KCRGVLAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRFLVVKSQISEI 343
K G LAK +P PKR K+ PK +FIGYA NS A RFLV KS EI
Sbjct: 701 KVWGCLAKVEVPLPKRVKIGPKIVDCVFIGYAVNSKACRFLVHKSDNPEI 750
Score = 45.4 bits (106), Expect(2) = 3e-11
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GCFSK 216
ILT+ ILNRV + P+ELWK R P L + KV GC +K
Sbjct: 667 ILTANKILNRVPRSKTQSIPYELWKGRKPNLKYFKVWGCLAK 708
>CAN66873.1 hypothetical protein VITISV_021427 [Vitis vinifera]
Length = 1473
Score = 51.2 bits (121), Expect(3) = 2e-10
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GCFS 213
+LT+C ILNR+ +K E +P+ELWK R P + + KV GC +
Sbjct: 630 LLTACHILNRIPMKKKEISPYELWKGRKPNIGYFKVWGCLA 670
Score = 32.7 bits (73), Expect(3) = 2e-10
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 194 KCRGVLAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRFLVVKSQI 334
K G LA +P + K+ P+ F+G A NSNA R L ++S +
Sbjct: 664 KVWGCLAYCKKTDPNKTKLGPRAIKCAFVGCASNSNAYRLLDLESNV 710
Score = 28.1 bits (61), Expect(3) = 2e-10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 330 KLVKFPINTIIEAREATFFENIIQNCYS 413
+L+ N IIE+RE FFEN++ + S
Sbjct: 702 RLLDLESNVIIESREVEFFENLLSDSNS 729
>CAN76565.1 hypothetical protein VITISV_010942 [Vitis vinifera]
Length = 839
Score = 46.6 bits (109), Expect(3) = 2e-10
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = +2
Query: 209 LAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRFLVVKSQISEI 343
L K + +PK+ K+ PKT IFIGYA NS+A FLV KS I +I
Sbjct: 355 LTKVVLQKPKQVKIGPKTIDCIFIGYANNSSAYHFLVHKSSIPDI 399
Score = 38.9 bits (89), Expect(3) = 2e-10
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GCFSK 216
IL + ILN++ KN + T +ELWK P +LKV C +K
Sbjct: 316 ILFANHILNKIPHKNKDVTSYELWKGHKPSYKYLKVWECLTK 357
Score = 26.6 bits (57), Expect(3) = 2e-10
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 351 NTIIEAREATFFENI 395
+TIIE+R A+FFENI
Sbjct: 402 DTIIESRNASFFENI 416
>XP_008388960.1 PREDICTED: DNA polymerase zeta catalytic subunit-like [Malus
domestica]
Length = 2068
Score = 57.0 bits (136), Expect(3) = 6e-10
Identities = 31/50 (62%), Positives = 35/50 (70%)
Frame = +2
Query: 194 KCRGVLAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRFLVVKSQISEI 343
K G LAK +P PKR K+ PKT +FIGYA NS A RFLVVKS IS+I
Sbjct: 1818 KVWGXLAKVQVPLPKRTKLGPKTIDXVFIGYANNSAAYRFLVVKSXISDI 1867
Score = 28.5 bits (62), Expect(3) = 6e-10
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 121 VTVKNNEKTPFELWKKRSPRLNFLKV*GCFSK 216
V +K +++P+E+WK P LKV G +K
Sbjct: 1794 VPLKXIBESPYEIWKGHKPTYKTLKVWGXLAK 1825
Score = 24.6 bits (52), Expect(3) = 6e-10
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +3
Query: 348 INTIIEAREATFFENI 395
+NTI+E+ +A FFE+I
Sbjct: 1869 VNTILESADAEFFEDI 1884
>JAU56143.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Noccaea caerulescens]
Length = 101
Score = 55.1 bits (131), Expect(2) = 3e-09
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GC 207
+LT+C++LNRV K N+ TP+ELW K+ P LN+L+V GC
Sbjct: 6 MLTACYLLNRVPNKRNKVTPYELWYKKKPNLNYLRVWGC 44
Score = 33.5 bits (75), Expect(2) = 3e-09
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2
Query: 197 CRGVLAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRFLVVK 325
CR V+ +P+PK + + + IFIGYA++S A RF V++
Sbjct: 44 CRAVVR---LPQPKIRTLGERGIDCIFIGYAEHSKAYRFYVIE 83
>JAU33890.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Noccaea caerulescens]
Length = 827
Score = 54.7 bits (130), Expect(2) = 4e-09
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GC 207
+LT+C++LNRV K N+ TP+ELW K+ P LN+L+V GC
Sbjct: 652 MLTACYLLNRVHNKRNKVTPYELWYKKKPNLNYLRVWGC 690
Score = 33.5 bits (75), Expect(2) = 4e-09
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2
Query: 197 CRGVLAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRFLVVK 325
CR V+ +P+PK + + + IFIGYA++S A RF V++
Sbjct: 690 CRAVVR---LPQPKIRTLGERGIDCIFIGYAEHSKAYRFYVIE 729
>ABF95851.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1075
Score = 63.2 bits (152), Expect(2) = 6e-09
Identities = 28/52 (53%), Positives = 36/52 (69%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GCFSKESNARTKKKE 246
+ T+CF+LNRV K E TP+ELWK R P LNFLKV GC +K + KK++
Sbjct: 526 LYTACFVLNRVPAKGTEVTPYELWKGRKPNLNFLKVWGCLAKVNIPVVKKRK 577
Score = 24.3 bits (51), Expect(2) = 6e-09
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +3
Query: 351 NTIIEAREATFFEN 392
NT++E+R+ TFFE+
Sbjct: 612 NTVMESRDTTFFED 625
>ABW81017.1 gag-pol polymerase, partial [Arabidopsis lyrata subsp. lyrata]
Length = 1034
Score = 54.7 bits (130), Expect(2) = 6e-09
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GC 207
+LT+C++LNRV K N+ TP+ELW K+ P LN+L+V GC
Sbjct: 584 MLTACYLLNRVPNKRNKITPYELWYKKKPNLNYLRVWGC 622
Score = 32.7 bits (73), Expect(2) = 6e-09
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 197 CRGVLAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRFLVVK 325
CR ++ +P+PK K + + IFIGYA +S A RF V++
Sbjct: 622 CRAIVR---LPQPKIKTLGERGIDCIFIGYALHSKAYRFYVIE 661
>CAN80619.1 hypothetical protein VITISV_005064 [Vitis vinifera]
Length = 965
Score = 44.7 bits (104), Expect(3) = 8e-09
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GC 207
I+++C NR+ K KTP+ELWK +P + +LKV GC
Sbjct: 396 IISACHSQNRIPYKRTGKTPYELWKDYAPNIAYLKVWGC 434
Score = 35.0 bits (79), Expect(3) = 8e-09
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +2
Query: 254 PKTTYIIFIGYAQNSNAIRFLVVKSQIS 337
PKT +FIGYA+NS A +FLV KS+ S
Sbjct: 435 PKTFDTMFIGYAENSMAYKFLVTKSKNS 462
Score = 26.6 bits (57), Expect(3) = 8e-09
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 348 INTIIEAREATFFENI 395
+NTIIE A FFENI
Sbjct: 466 VNTIIETNNADFFENI 481
>ABI34306.1 Polyprotein, putative [Solanum demissum]
Length = 1691
Score = 52.0 bits (123), Expect(2) = 2e-08
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GCFS 213
ILT+C++LNRV K ++ TPFELWK P L +L+V GC +
Sbjct: 628 ILTACYVLNRVPHKKSKLTPFELWKGYKPSLGYLRVWGCLA 668
Score = 33.5 bits (75), Expect(2) = 2e-08
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 203 GVLAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRFLVVKSQI 334
G LA + +PK K+ K T F+GYA NS A RF ++ I
Sbjct: 665 GCLAFVRLMDPKITKLGKKVTTCAFLGYASNSTAYRFFNLEDNI 708
>KYP72325.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 565
Score = 62.0 bits (149), Expect = 4e-08
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GCFSKESNARTKKKE 246
+ T+C ILNR+ KN++KTP+ELWK R P L +LKV GC +K + KK++
Sbjct: 214 LFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWGCLAKVNIPINKKRK 265
>KYP33726.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 880
Score = 62.0 bits (149), Expect = 4e-08
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GCFSKESNARTKKKE 246
+ T+C ILNR+ KN++KTP+ELWK R P L +LKV GC +K + KK++
Sbjct: 544 LFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWGCLAKVNIPINKKRK 595
>KYP31709.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 714
Score = 58.9 bits (141), Expect(2) = 6e-08
Identities = 25/52 (48%), Positives = 36/52 (69%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GCFSKESNARTKKKE 246
+ T+C ILNR+ KN++KTP+ELWK R P L +LKV C +K + KK++
Sbjct: 542 LFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWWCLAKVNIPINKKRK 593
Score = 25.0 bits (53), Expect(2) = 6e-08
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 312 FWL*NPKLVKFPINTIIEAREATFFENI 395
F + N ++ + N I+E+R+ FFENI
Sbjct: 615 FLVINSEVSEISNNIIMESRDVVFFENI 642
>CAN66576.1 hypothetical protein VITISV_016964 [Vitis vinifera]
Length = 1316
Score = 56.6 bits (135), Expect(2) = 8e-08
Identities = 33/70 (47%), Positives = 44/70 (62%)
Frame = +2
Query: 134 IMKKPLLSYGKRDLLD*IS*KCRGVLAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRF 313
+M LLS G + + K G LAK +P+PK+ K+ PKT IFIGYA NS+A RF
Sbjct: 770 MMNAMLLSSGHKPCYKYL--KVWGCLAKVEVPKPKKVKIGPKTIDCIFIGYANNSSAYRF 827
Query: 314 LVVKSQISEI 343
LV KS+I ++
Sbjct: 828 LVYKSEIPDV 837
Score = 26.9 bits (58), Expect(2) = 8e-08
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 348 INTIIEAREATFFENI 395
+NTIIE+R A FFE I
Sbjct: 839 VNTIIESRNAAFFETI 854
>CAN66637.1 hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 57.0 bits (136), Expect(2) = 2e-07
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = +2
Query: 203 GVLAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRFLVVKSQISEI 343
G LAK A+P PK+ K+ PKT IFIGYA NSNA RFLV +S I +I
Sbjct: 697 GCLAKVAVPPPKKVKIGPKTIDCIFIGYAHNSNAYRFLVYESNIPDI 743
Score = 25.0 bits (53), Expect(2) = 2e-07
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +3
Query: 351 NTIIEAREATFFENI 395
NTI+E+R A+FFE++
Sbjct: 746 NTIMESRNASFFEDV 760
>AAL75486.1 putative Fourf gag/pol protein [Zea mays]
Length = 1292
Score = 54.7 bits (130), Expect(2) = 2e-07
Identities = 25/52 (48%), Positives = 35/52 (67%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GCFSKESNARTKKKE 246
ILT+C +LNRV KN E TPFE W+KR L++L+ GC +K + KK++
Sbjct: 637 ILTACHVLNRVPTKNKEITPFEEWEKRRLNLSYLRTWGCLAKVNVPINKKRK 688
Score = 27.3 bits (59), Expect(2) = 2e-07
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = +3
Query: 348 INTIIEAREATFFEN 392
++TI+E+R+ATFFEN
Sbjct: 722 VDTIMESRDATFFEN 736
>CAN73567.1 hypothetical protein VITISV_003451 [Vitis vinifera]
Length = 1277
Score = 57.0 bits (136), Expect(2) = 2e-07
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = +2
Query: 203 GVLAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRFLVVKSQISEI 343
G LAK A+P PK+ K+ PKT IFIGYA NSNA RFLV +S I +I
Sbjct: 697 GCLAKVAVPPPKKVKIGPKTIDCIFIGYAHNSNAYRFLVYESNIPDI 743
Score = 25.0 bits (53), Expect(2) = 2e-07
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +3
Query: 351 NTIIEAREATFFENI 395
NTI+E+R A+FFE++
Sbjct: 746 NTIMESRNASFFEDV 760
>AAU90333.1 Putative gag and pol polyprotein, identical [Solanum demissum]
Length = 853
Score = 48.5 bits (114), Expect(2) = 2e-07
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +1
Query: 91 ILTSCFILNRVTVKNNEKTPFELWKKRSPRLNFLKV*GCFS 213
ILT+C++LNRV K ++ T FELWK P L +L+V GC +
Sbjct: 429 ILTACYVLNRVPHKKSKLTHFELWKGYKPSLGYLRVWGCLA 469
Score = 33.5 bits (75), Expect(2) = 2e-07
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 203 GVLAKRAMPEPKRKKV*PKTTYIIFIGYAQNSNAIRFLVVKSQI 334
G LA + +PK K+ K T F+GYA NS A RF ++ I
Sbjct: 466 GCLAFVRLMDPKITKLGKKVTTCAFLGYASNSTAYRFFNLEDNI 509