BLASTX nr result
ID: Panax25_contig00046469
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax25_contig00046469
(507 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAR96001.1 polyprotein-like protein [Musa acuminata] 66 9e-11
JAV01726.1 Retrovirus-related Pol polyprotein from transposon TN... 63 8e-09
KYP76581.1 Retrovirus-related Pol polyprotein from transposon TN... 61 2e-08
KRY02153.1 Retrovirus-related Pol polyprotein from transposon TN... 58 4e-08
KYP69579.1 Retrovirus-related Pol polyprotein from transposon TN... 60 6e-08
BAA22288.1 polyprotein [Oryza australiensis] 61 7e-08
KYP76577.1 Retrovirus-related Pol polyprotein from transposon TN... 61 7e-08
AAX96622.1 retrotransposon protein, putative, Ty1-copia sub-clas... 60 8e-08
ABA97706.1 retrotransposon protein, putative, Ty1-copia subclass... 59 1e-07
AAP03364.1 putative polyprotein [Oryza sativa Japonica Group] 60 1e-07
ABF96491.1 retrotransposon protein, putative, Ty1-copia subclass... 60 1e-07
AMY96445.1 gag/pol protein [Momordica dioica] 60 1e-07
OAO97959.1 hypothetical protein AXX17_AT4G08610 [Arabidopsis tha... 60 2e-07
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 60 2e-07
AAX94813.1 retrotransposon protein, putative, Ty1-copia sub-clas... 60 2e-07
ABA97342.2 retrotransposon protein, putative, Ty1-copia subclass... 59 3e-07
AAV85747.1 Integrase core domain, putative [Oryza sativa Japonic... 59 3e-07
ABG22008.1 retrotransposon protein, putative, Ty1-copia subclass... 59 6e-07
XP_010523407.1 PREDICTED: dihomomethionine N-hydroxylase-like, p... 58 7e-07
AAS01945.1 putative polyprotein [Oryza sativa Japonica Group] 58 8e-07
>AAR96001.1 polyprotein-like protein [Musa acuminata]
Length = 130
Score = 65.9 bits (159), Expect = 9e-11
Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 9/67 (13%)
Frame = -3
Query: 184 TIMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGGSKLKLE 32
+IMY M CTRPD+ ++ S G +H K VK ILKYL TKD++ +YGG+ LK+E
Sbjct: 12 SIMYVMLCTRPDIAQALSVTSRYQADPGIEHWKAVKCILKYLRKTKDLLLVYGGNSLKVE 71
Query: 31 GLTDSSF 11
G DSSF
Sbjct: 72 GYMDSSF 78
>JAV01726.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Noccaea caerulescens]
Length = 243
Score = 62.8 bits (151), Expect = 8e-09
Identities = 36/68 (52%), Positives = 43/68 (63%), Gaps = 10/68 (14%)
Frame = -3
Query: 184 TIMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGGS-KLKL 35
+IMYAM CTRPD+ + S GE H VKNILKYL +TKD +YGGS +L L
Sbjct: 26 SIMYAMLCTRPDIACALSMTSIYQSDPGESHWTAVKNILKYLRNTKDKFLVYGGSDELVL 85
Query: 34 EGLTDSSF 11
G TD+SF
Sbjct: 86 SGYTDASF 93
>KYP76581.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 184
Score = 60.8 bits (146), Expect = 2e-08
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 9/67 (13%)
Frame = -3
Query: 181 IMYAMKCTRPDVD---------RSYSGEDHCKTVKNILKYLIDTKDVIKIYGGSKLKLEG 29
IMY M CTRPDV ++ GE++ K VK ILKYL T+D IYGG++L L+G
Sbjct: 13 IMYIMTCTRPDVAFAPGVVSRYQANPGEENWKVVKTILKYLRRTQDQFLIYGGTELMLKG 72
Query: 28 LTDSSFS 8
TD+SF+
Sbjct: 73 YTDASFA 79
>KRY02153.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trichinella patagoniensis]
Length = 87
Score = 57.8 bits (138), Expect = 4e-08
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 10/66 (15%)
Frame = -3
Query: 178 MYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGG-SKLKLEG 29
MYAM CTRPDV+ + S G++H VKNILKYL TKD+ +YGG +L ++G
Sbjct: 1 MYAMLCTRPDVNLAVSLVGRYQSNPGKEHWTAVKNILKYLKRTKDMFLVYGGDEELVVKG 60
Query: 28 LTDSSF 11
D+SF
Sbjct: 61 YVDASF 66
>KYP69579.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 213
Score = 60.1 bits (144), Expect = 6e-08
Identities = 34/66 (51%), Positives = 41/66 (62%), Gaps = 9/66 (13%)
Frame = -3
Query: 181 IMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGGSKLKLEG 29
I Y M CTRP+V + S GE+H K VK ILKYL TKD IYG S+LKL+G
Sbjct: 86 ITYTMICTRPNVAYALSLASRYQANLGEEHWKVVKTILKYLRRTKDQFLIYGDSELKLKG 145
Query: 28 LTDSSF 11
T++SF
Sbjct: 146 YTNASF 151
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 61.2 bits (147), Expect = 7e-08
Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Frame = -3
Query: 184 TIMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGGSK-LKL 35
+IMYAM CTRPDV + S GE H VKNILKYL TKD+ +YGG + L +
Sbjct: 1100 SIMYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVV 1159
Query: 34 EGLTDSSF 11
G TD+SF
Sbjct: 1160 SGYTDASF 1167
>KYP76577.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 368
Score = 60.8 bits (146), Expect = 7e-08
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 9/67 (13%)
Frame = -3
Query: 181 IMYAMKCTRPDVD---------RSYSGEDHCKTVKNILKYLIDTKDVIKIYGGSKLKLEG 29
IMY M CTRPDV ++ GE++ K VK ILKYL T+D IYGG++L L+G
Sbjct: 197 IMYIMTCTRPDVAFAPGVVSRYQANPGEENWKVVKTILKYLRRTQDQFLIYGGTELMLKG 256
Query: 28 LTDSSFS 8
TD+SF+
Sbjct: 257 YTDASFA 263
>AAX96622.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA92972.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 305
Score = 60.5 bits (145), Expect = 8e-08
Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Frame = -3
Query: 184 TIMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGG-SKLKL 35
+IMYAM CTRPDV + S GE H VKNILKYLI TKD+ +YGG +L +
Sbjct: 83 SIMYAMLCTRPDVSYALSATSRYQSDPGETHWIAVKNILKYLIRTKDMFLVYGGQEELVV 142
Query: 34 EGLTDSSF 11
TD+SF
Sbjct: 143 NDYTDASF 150
>ABA97706.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 206
Score = 59.3 bits (142), Expect = 1e-07
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 10/70 (14%)
Frame = -3
Query: 184 TIMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGG-SKLKL 35
+I+YAM CTRPDV + S GE H +KNILKYL TKD+ +YGG +L +
Sbjct: 15 SIIYAMLCTRPDVSYALSATNRYQSDLGESHWIAIKNILKYLRRTKDMFLVYGGHEELVV 74
Query: 34 EGLTDSSFSD 5
G TD+SF +
Sbjct: 75 NGYTDTSFQN 84
>AAP03364.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 657
Score = 60.5 bits (145), Expect = 1e-07
Identities = 35/67 (52%), Positives = 41/67 (61%), Gaps = 10/67 (14%)
Frame = -3
Query: 181 IMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGG-SKLKLE 32
IMYAM CTRPDV + S GE H VKNILKYL TKD+ +YGG +L +
Sbjct: 465 IMYAMLCTRPDVSYALSATSRYQLDPGESHWIAVKNILKYLRRTKDMFLVYGGQEELVVN 524
Query: 31 GLTDSSF 11
G TD+SF
Sbjct: 525 GYTDASF 531
>ABF96491.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 767
Score = 60.5 bits (145), Expect = 1e-07
Identities = 35/67 (52%), Positives = 41/67 (61%), Gaps = 10/67 (14%)
Frame = -3
Query: 181 IMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGG-SKLKLE 32
IMYAM CTRPDV + S GE H VKNILKYL TKD+ +YGG +L +
Sbjct: 575 IMYAMLCTRPDVSYALSATSRYQLDPGESHWIAVKNILKYLRRTKDMFLVYGGQEELVVN 634
Query: 31 GLTDSSF 11
G TD+SF
Sbjct: 635 GYTDASF 641
>AMY96445.1 gag/pol protein [Momordica dioica]
Length = 1313
Score = 60.5 bits (145), Expect = 1e-07
Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 10/68 (14%)
Frame = -3
Query: 184 TIMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGGSK-LKL 35
++MYAM CTRPDV + S G DH VKNILKYL T+++ +YGG K L +
Sbjct: 1126 SLMYAMLCTRPDVCYALSIVSRYQSNPGRDHWTAVKNILKYLRRTRNMFLVYGGDKDLAV 1185
Query: 34 EGLTDSSF 11
+G TDSSF
Sbjct: 1186 KGYTDSSF 1193
>OAO97959.1 hypothetical protein AXX17_AT4G08610 [Arabidopsis thaliana]
Length = 568
Score = 60.1 bits (144), Expect = 2e-07
Identities = 36/68 (52%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Frame = -3
Query: 184 TIMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGGS-KLKL 35
+IMYAM CTRPDV + S GE H VKNILKYL TKD +YGGS +L +
Sbjct: 354 SIMYAMLCTRPDVACALSMTSRYQSDPGESHWIVVKNILKYLRRTKDKFLVYGGSEELVV 413
Query: 34 EGLTDSSF 11
G TD+SF
Sbjct: 414 SGYTDASF 421
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 59.7 bits (143), Expect = 2e-07
Identities = 35/68 (51%), Positives = 41/68 (60%), Gaps = 10/68 (14%)
Frame = -3
Query: 184 TIMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGG-SKLKL 35
+IMYAM CTRPDV + S E H VKNILKYL TKDV +YGG +L +
Sbjct: 680 SIMYAMICTRPDVSYALSVTSRYQADPSEGHWTAVKNILKYLRRTKDVFLVYGGDEELVV 739
Query: 34 EGLTDSSF 11
G TD+SF
Sbjct: 740 NGYTDASF 747
>AAX94813.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] ABA93176.1 retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 938
Score = 59.7 bits (143), Expect = 2e-07
Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Frame = -3
Query: 184 TIMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGG-SKLKL 35
+IMYAM CTRPDV + S GE H +KNILKYL TKD+ +YGG +L +
Sbjct: 819 SIMYAMLCTRPDVSYALSATSQYQSDPGESHWIALKNILKYLRRTKDMFLVYGGQEELVV 878
Query: 34 EGLTDSSF 11
G TD+SF
Sbjct: 879 NGYTDASF 886
>ABA97342.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1050
Score = 59.3 bits (142), Expect = 3e-07
Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Frame = -3
Query: 184 TIMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGG-SKLKL 35
+IMYAM CT PDV + S GE H VKNILKYL TKD+ +YGG +L +
Sbjct: 834 SIMYAMLCTHPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMFLVYGGQEELVV 893
Query: 34 EGLTDSSF 11
+G TD+SF
Sbjct: 894 KGYTDASF 901
>AAV85747.1 Integrase core domain, putative [Oryza sativa Japonica Group]
AAX92956.1 retrotransposon protein, putative, Ty1-copia
sub-class [Oryza sativa Japonica Group] ABA92827.2
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1184
Score = 59.3 bits (142), Expect = 3e-07
Identities = 35/68 (51%), Positives = 41/68 (60%), Gaps = 10/68 (14%)
Frame = -3
Query: 184 TIMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGG-SKLKL 35
+IMYAM CTRPDV + S GE H VKNILKYL TKD+ YGG +L +
Sbjct: 971 SIMYAMLCTRPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMFLAYGGQEELVV 1030
Query: 34 EGLTDSSF 11
G TD+SF
Sbjct: 1031 NGYTDASF 1038
>ABG22008.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 58.5 bits (140), Expect = 6e-07
Identities = 35/68 (51%), Positives = 41/68 (60%), Gaps = 10/68 (14%)
Frame = -3
Query: 184 TIMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGG-SKLKL 35
+IMYAM CTRPDV + S GE H VKNILKYL TKD+ IYGG +L +
Sbjct: 724 SIMYAMLCTRPDVPYALSATSQYQSDPGESHWIAVKNILKYLRRTKDMFLIYGGQEELVV 783
Query: 34 EGLTDSSF 11
TD+SF
Sbjct: 784 NNYTDASF 791
>XP_010523407.1 PREDICTED: dihomomethionine N-hydroxylase-like, partial [Tarenaya
hassleriana]
Length = 603
Score = 58.2 bits (139), Expect = 7e-07
Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 11/68 (16%)
Frame = -3
Query: 181 IMYAMKCTRPDVDRSYS---------GEDHCKTVKNILKYLIDTKDVIKIYGG--SKLKL 35
IMYA++CTRPDV + S GE H VKNI KYLI TKDV +Y G ++L +
Sbjct: 13 IMYAVQCTRPDVSLALSLTSRYQSDPGEPHWIAVKNIPKYLIRTKDVFLLYSGHENELVV 72
Query: 34 EGLTDSSF 11
G TD+SF
Sbjct: 73 SGYTDASF 80
>AAS01945.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1084
Score = 58.2 bits (139), Expect = 8e-07
Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 10/68 (14%)
Frame = -3
Query: 184 TIMYAMKCTRPDVD---------RSYSGEDHCKTVKNILKYLIDTKDVIKIYGG-SKLKL 35
+IMYAM CTRPDV +S E H VKNILKYL TKD+ +YGG +L +
Sbjct: 965 SIMYAMLCTRPDVSYVLSATSRYQSDPSESHWIAVKNILKYLRRTKDMFLVYGGQEELVV 1024
Query: 34 EGLTDSSF 11
G TD+SF
Sbjct: 1025 NGYTDASF 1032