BLASTX nr result
ID: Panax25_contig00032236
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax25_contig00032236
(1029 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AQK70926.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 1e-39
AQK94585.1 Nuclear pore complex protein NUP205 [Zea mays] AQK945... 85 8e-39
AQK78972.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 87 1e-34
AAT40504.2 Polyprotein, putative [Solanum demissum] 88 3e-32
OIT39959.1 histone deacetylase 14 [Nicotiana attenuata] 87 4e-32
AQK66479.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 92 3e-31
AQK84025.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 9e-31
AQL03708.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 90 1e-30
AQK78701.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 90 1e-30
AQK92036.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 86 2e-30
OIT28878.1 dead-box atp-dependent rna helicase 32 [Nicotiana att... 85 2e-30
ONM03863.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 86 3e-30
ONM52836.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 4e-30
ONM32720.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 4e-30
ONM06616.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 4e-30
ONM29620.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 4e-30
AQK46390.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 4e-30
AQK47447.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 86 5e-30
ONL92524.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 5e-30
AQK72949.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 86 5e-30
>AQK70926.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 790
Score = 87.8 bits (216), Expect(6) = 1e-39
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 514 LFALVIDEVTRDIQRDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 573
Query: 377 VF 382
+
Sbjct: 574 EY 575
Score = 53.1 bits (126), Expect(6) = 1e-39
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 647 LKGKFYRTAIRPAMLYGAE-CWPTKRQHVQQLSVTEMRMLRWICGHTRRDRVRNDDIRER 705
Query: 713 VGVAPIEVKISEHR 754
VGVAPIE K+ +HR
Sbjct: 706 VGVAPIEEKLMQHR 719
Score = 51.2 bits (121), Expect(6) = 1e-39
Identities = 25/52 (48%), Positives = 33/52 (63%)
Frame = +1
Query: 52 KKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 207
K KVS KY+++I++MY T V+T DG + D PI I +HQGS L F L
Sbjct: 466 KHKVSTKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSTLNPYLFAL 517
Score = 30.8 bits (68), Expect(6) = 1e-39
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W V+RD+ E +I + LA+D K W I +PE
Sbjct: 755 LTWTDAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 789
Score = 28.9 bits (63), Expect(6) = 1e-39
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 574 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 612
Score = 20.8 bits (42), Expect(6) = 1e-39
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +3
Query: 3 KAYNRLPRNAL*W 41
KAY+++PR+ + W
Sbjct: 450 KAYDKVPRSVMWW 462
>AQK94585.1 Nuclear pore complex protein NUP205 [Zea mays] AQK94592.1 Nuclear
pore complex protein NUP205 [Zea mays] AQK94593.1
Nuclear pore complex protein NUP205 [Zea mays]
AQK94596.1 Nuclear pore complex protein NUP205 [Zea
mays] AQK94599.1 Nuclear pore complex protein NUP205
[Zea mays]
Length = 331
Score = 84.7 bits (208), Expect(5) = 8e-39
Identities = 37/62 (59%), Positives = 49/62 (79%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+D + +DIQ ++PW MLF DD++LI+E + GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 55 LFALVIDVVTRDIQGDIPWCMLFADDVVLIEEIRSGVSQKLELWRQTLEAKGFRLSRSKT 114
Query: 377 VF 382
+
Sbjct: 115 EY 116
Score = 53.5 bits (127), Expect(5) = 8e-39
Identities = 26/55 (47%), Positives = 35/55 (63%)
Frame = +1
Query: 43 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 207
A EK K S KY+++I++MY T V+T DG + D PI I +HQGS L+ F L
Sbjct: 4 ALEKHKASTKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFAL 58
Score = 52.0 bits (123), Expect(5) = 8e-39
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 188 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIRER 246
Query: 713 VGVAPIEVKISEHR 754
VGV PIE K+ +HR
Sbjct: 247 VGVTPIEEKLMQHR 260
Score = 31.6 bits (70), Expect(5) = 8e-39
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 296 LTWTEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 330
Score = 28.9 bits (63), Expect(5) = 8e-39
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 115 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 153
>AQK78972.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 634
Score = 87.4 bits (215), Expect(4) = 1e-34
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LVMDE+ +DIQ ++PW MLF DD++L+DE++ GVN LE+WR T E+KGFRLSR KT
Sbjct: 381 LFALVMDEVTRDIQRDIPWCMLFADDVVLVDESRAGVNRKLELWRHTLESKGFRLSRIKT 440
Query: 377 VF 382
+
Sbjct: 441 EY 442
Score = 54.7 bits (130), Expect(4) = 1e-34
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = +1
Query: 43 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 207
A EK K KY+ +I++MY A T V+TCDG ++D PI + +HQGS L+ F L
Sbjct: 330 ALEKHKAPTKYITLIKDMYKDAMTFVRTCDGDTNDFPIKVGLHQGSALSPYLFAL 384
Score = 50.1 bits (118), Expect(4) = 1e-34
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
LKGKFYR T+ +ML AE C TK++HV ++ + G + ++N DI+ +
Sbjct: 514 LKGKFYRTTICPSMLYGAE-CWPTKRRHVQQLSVAEMRMLRWFCGHTRRDRVQNKDIRDR 572
Query: 713 VGVAPIEVKISEHR 754
VGVAPIE K+ +HR
Sbjct: 573 VGVAPIEEKLIQHR 586
Score = 24.3 bits (51), Expect(4) = 1e-34
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 447 VPKKYVFRYLGSISQK 494
V KK FRYLGS+ QK
Sbjct: 464 VTKKDTFRYLGSMLQK 479
>AAT40504.2 Polyprotein, putative [Solanum demissum]
Length = 868
Score = 87.8 bits (216), Expect(5) = 3e-32
Identities = 40/62 (64%), Positives = 50/62 (80%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LVMDE+ + IQ+ VPW MLF DDI+LIDET++ VN LE+WR T E+KGFRLSR+KT
Sbjct: 415 LFALVMDELTRSIQETVPWCMLFADDIVLIDETRDRVNARLEVWRQTLESKGFRLSRTKT 474
Query: 377 VF 382
+
Sbjct: 475 EY 476
Score = 40.4 bits (93), Expect(5) = 3e-32
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +1
Query: 88 RNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 207
++MYDGA T V+T G S P+ I +HQGSVL+ F L
Sbjct: 379 KDMYDGAKTRVRTVGGDSEHFPVEIGLHQGSVLSPFLFAL 418
Score = 40.4 bits (93), Expect(5) = 3e-32
Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVG--IQGWIRNVDIQKK 712
LKGKFYRV +R +L AE C K HV KM + G IRN I++K
Sbjct: 549 LKGKFYRVVVRPALLYGAE-CWPVKNAHVHKMHVAEMRMLRWMCGHTRSDKIRNEVIREK 607
Query: 713 VGVAPIEVKISEHR 754
VGVA + K+ E R
Sbjct: 608 VGVASVVDKLREAR 621
Score = 30.8 bits (68), Expect(5) = 3e-32
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQ 491
+YL CKF + +PKK FRYLG++ Q
Sbjct: 475 EYLGCKFSDGLDETDVEVRLAAQVIPKKESFRYLGAVIQ 513
Score = 28.5 bits (62), Expect(5) = 3e-32
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 864 WEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
WE+ +++D+ I E + LD KEW I++ +
Sbjct: 659 WEEVIRQDLAMLHITEDMTLDRKEWRSRIKVED 691
>OIT39959.1 histone deacetylase 14 [Nicotiana attenuata]
Length = 763
Score = 87.0 bits (214), Expect(4) = 4e-32
Identities = 39/62 (62%), Positives = 50/62 (80%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LVMD + I+ +VPW MLF DDI+LIDET++GVN+ LE+WR T E+KGF+LSRSKT
Sbjct: 156 LFALVMDALTHHIRGDVPWCMLFADDIVLIDETRDGVNERLEVWRQTLESKGFKLSRSKT 215
Query: 377 VF 382
+
Sbjct: 216 EY 217
Score = 50.8 bits (120), Expect(4) = 4e-32
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGI-LRREY*GRCVGIQ-GWIRNVDIQKK 712
LKGKFYR +RL ML AE C K H+ +M + + R C + IRN DI+KK
Sbjct: 290 LKGKFYRAVVRLAMLYGAE-CWPVKNSHIQRMKVAVMRMLRWMCGHTKIDKIRNEDIRKK 348
Query: 713 VGVAPIEVKISEHR 754
VGVAP++ K+ E R
Sbjct: 349 VGVAPVDDKMREAR 362
Score = 44.7 bits (104), Expect(4) = 4e-32
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +1
Query: 49 EKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 207
E K V Y+ I++MYDGA T V+T G S P+ + +HQGS L+ F L
Sbjct: 107 EAKGVLVAYIRAIKDMYDGAKTKVRTVGGDSEHFPVVMGLHQGSALSPFLFAL 159
Score = 25.4 bits (54), Expect(4) = 4e-32
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQKGR 500
+YL+ KF + +PK+ F+YLGS+ Q R
Sbjct: 216 EYLEYKFSVESREVGRDVRLGSQVIPKRDSFKYLGSMIQGDR 257
>AQK66479.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 759
Score = 92.0 bits (227), Expect(4) = 3e-31
Identities = 42/73 (57%), Positives = 58/73 (79%)
Frame = +2
Query: 164 EYIKGQC*PILLFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSE 343
+YIKG+ P L F LV+D++ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T E
Sbjct: 473 DYIKGRLSPYL-FALVIDKVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLE 531
Query: 344 AKGFRLSRSKTVF 382
AKGFRLSRSKT +
Sbjct: 532 AKGFRLSRSKTKY 544
Score = 52.4 bits (124), Expect(4) = 3e-31
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 616 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 674
Query: 713 VGVAPIEVKISEHR 754
VGVAPIE K+ +HR
Sbjct: 675 VGVAPIEEKLMQHR 688
Score = 32.0 bits (71), Expect(4) = 3e-31
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 724 LTWTEAVKRDLKEWNIDKELAMDRKGWKCAIHVPE 758
Score = 28.5 bits (62), Expect(4) = 3e-31
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 543 KYMKCDFSATGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 581
>AQK84025.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 88.2 bits (217), Expect(4) = 9e-31
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 377 VF 382
+
Sbjct: 800 EY 801
Score = 54.3 bits (129), Expect(4) = 9e-31
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
LKGKFYR T+R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 873 LKGKFYRTTIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 931
Query: 713 VGVAPIEVKISEHR 754
VGVAPIE K+ +HR
Sbjct: 932 VGVAPIEEKLMQHR 945
Score = 32.0 bits (71), Expect(4) = 9e-31
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 981 LTWTEAVKRDLKEWNIDKELAMDRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 9e-31
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSATGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
>AQL03708.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 89.7 bits (221), Expect(4) = 1e-30
Identities = 39/62 (62%), Positives = 51/62 (82%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LVMDE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVMDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 377 VF 382
+
Sbjct: 800 EY 801
Score = 52.4 bits (124), Expect(4) = 1e-30
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 873 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 931
Query: 713 VGVAPIEVKISEHR 754
VGVAPIE K+ +HR
Sbjct: 932 VGVAPIEEKLMQHR 945
Score = 32.0 bits (71), Expect(4) = 1e-30
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 981 LTWSEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 1e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMRYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
>AQK78701.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 89.7 bits (221), Expect(4) = 1e-30
Identities = 39/62 (62%), Positives = 51/62 (82%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+DE+ +DIQ ++PW MLF DD++LIDE++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGDIPWCMLFADDVVLIDESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 377 VF 382
+
Sbjct: 800 EY 801
Score = 52.4 bits (124), Expect(4) = 1e-30
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 873 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMWRWICGHTRRDRVRNDDIRER 931
Query: 713 VGVAPIEVKISEHR 754
VGVAPIE K+ +HR
Sbjct: 932 VGVAPIEEKLMQHR 945
Score = 31.6 bits (70), Expect(4) = 1e-30
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E DI + LA+D K W +PE
Sbjct: 981 LTWTEAVKRDLKEWDIDKELAVDRKGWKCATHVPE 1015
Score = 28.9 bits (63), Expect(4) = 1e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
>AQK92036.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 85.9 bits (211), Expect(4) = 2e-30
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+DE+ +DIQ +PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGVLPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 377 VF 382
+
Sbjct: 800 EY 801
Score = 56.6 bits (135), Expect(4) = 2e-30
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Frame = +2
Query: 521 T*LEKPLKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRN 694
T + + LKGKFYR +R ML AE C TK++HV ++G+ G + +RN
Sbjct: 867 TRVPRKLKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLGVAEMRMLRWICGHTRRDRVRN 925
Query: 695 VDIQKKVGVAPIEVKISEHR 754
DI+++VGVAPIE K+ +HR
Sbjct: 926 DDIRERVGVAPIEEKLMQHR 945
Score = 30.8 bits (68), Expect(4) = 2e-30
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA D K W I +PE
Sbjct: 981 LTWTEAVKRDLKEWNIDKELAADRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 2e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
>OIT28878.1 dead-box atp-dependent rna helicase 32 [Nicotiana attenuata]
Length = 1094
Score = 84.7 bits (208), Expect(4) = 2e-30
Identities = 40/63 (63%), Positives = 49/63 (77%)
Frame = +2
Query: 194 LLFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSK 373
LLF LVMD I IQ +VPW MLF DDI+LIDET+ G N+ LE+WR T E+KGF+LSR+K
Sbjct: 227 LLFALVMDAITCHIQGDVPWCMLFADDIVLIDETRVGGNERLEVWRQTLESKGFKLSRAK 286
Query: 374 TVF 382
T +
Sbjct: 287 TEY 289
Score = 47.0 bits (110), Expect(4) = 2e-30
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 49 EKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 207
E K V Y+ VI++MYDGA T V+T G S P+ + +HQG L+ + F L
Sbjct: 179 EAKSVPEAYIRVIKDMYDGAKTRVRTVGGDSDHFPVVMGLHQGFALSPLLFAL 231
Score = 42.7 bits (99), Expect(4) = 2e-30
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGIQGW--IRNVDIQKK 712
LKGK YR +R ML AE C K HV +M + G+ IRN I++K
Sbjct: 362 LKGKSYRAVVRPAMLYGAE-CWPVKNSHVQRMKVAEMRMLRWMCGLTRLDKIRNEVIREK 420
Query: 713 VGVAPIEVKISEHR 754
VGVAP++ K+ E R
Sbjct: 421 VGVAPVDEKMREAR 434
Score = 27.3 bits (59), Expect(4) = 2e-30
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQ 491
+YL+CKF + + K+ FRYLGS+ Q
Sbjct: 288 EYLECKFSAEPSEVGRDVKLGSKVIAKRDNFRYLGSVIQ 326
>ONM03863.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 85.9 bits (211), Expect(4) = 3e-30
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+DE+ +DIQ +PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGVLPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 377 VF 382
+
Sbjct: 800 EY 801
Score = 55.8 bits (133), Expect(4) = 3e-30
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Frame = +2
Query: 533 KPLKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQ 706
+ LKGKFYR T+R ML AE C TK++HV ++ + G + +RN DI+
Sbjct: 871 RKLKGKFYRTTIRPAMLYGAE-CWPTKRRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIR 929
Query: 707 KKVGVAPIEVKISEHR 754
++VGVAPIE K+ +HR
Sbjct: 930 ERVGVAPIEEKLMQHR 945
Score = 30.8 bits (68), Expect(4) = 3e-30
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA D K W I +PE
Sbjct: 981 LTWTEAVKRDLKEWNIDKELAADRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 3e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
>ONM52836.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 88.2 bits (217), Expect(4) = 4e-30
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 377 VF 382
+
Sbjct: 800 EY 801
Score = 52.4 bits (124), Expect(4) = 4e-30
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 873 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 931
Query: 713 VGVAPIEVKISEHR 754
VGVAPIE K+ +HR
Sbjct: 932 VGVAPIEEKLMQHR 945
Score = 31.6 bits (70), Expect(4) = 4e-30
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 981 LTWTEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 4e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
>ONM32720.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 88.2 bits (217), Expect(4) = 4e-30
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 377 VF 382
+
Sbjct: 800 EY 801
Score = 52.4 bits (124), Expect(4) = 4e-30
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 873 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVTEMRMLRWICGHTRRDRVRNDDIRER 931
Query: 713 VGVAPIEVKISEHR 754
VGVAPIE K+ +HR
Sbjct: 932 VGVAPIEEKLMQHR 945
Score = 31.6 bits (70), Expect(4) = 4e-30
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 981 LTWTEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 4e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
>ONM06616.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 88.2 bits (217), Expect(4) = 4e-30
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 377 VF 382
+
Sbjct: 800 EY 801
Score = 52.4 bits (124), Expect(4) = 4e-30
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 873 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 931
Query: 713 VGVAPIEVKISEHR 754
VGVAPIE K+ +HR
Sbjct: 932 VGVAPIEEKLMQHR 945
Score = 31.6 bits (70), Expect(4) = 4e-30
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 981 LTWTEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 4e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
>ONM29620.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 934
Score = 88.2 bits (217), Expect(4) = 4e-30
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 658 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 717
Query: 377 VF 382
+
Sbjct: 718 EY 719
Score = 52.4 bits (124), Expect(4) = 4e-30
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 791 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 849
Query: 713 VGVAPIEVKISEHR 754
VGVAPIE K+ +HR
Sbjct: 850 VGVAPIEEKLMQHR 863
Score = 31.6 bits (70), Expect(4) = 4e-30
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 899 LTWTEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 933
Score = 28.9 bits (63), Expect(4) = 4e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 718 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 756
>AQK46390.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 557
Score = 88.2 bits (217), Expect(4) = 4e-30
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 281 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 340
Query: 377 VF 382
+
Sbjct: 341 EY 342
Score = 52.4 bits (124), Expect(4) = 4e-30
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 414 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 472
Query: 713 VGVAPIEVKISEHR 754
VGVAPIE K+ +HR
Sbjct: 473 VGVAPIEEKLMQHR 486
Score = 31.6 bits (70), Expect(4) = 4e-30
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 522 LTWTEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 556
Score = 28.9 bits (63), Expect(4) = 4e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 341 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 379
>AQK47447.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 657
Score = 85.9 bits (211), Expect(5) = 5e-30
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+DE+ +DIQ +PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 381 LFALVIDEVTRDIQGVLPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 440
Query: 377 VF 382
+
Sbjct: 441 EY 442
Score = 53.9 bits (128), Expect(5) = 5e-30
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Frame = +2
Query: 533 KPLKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVG---IQGWIRNVDI 703
+ LKGKFYR +R ML AE C TK++HV ++ + R +G + +RN DI
Sbjct: 512 RKLKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLSVAEMRML-RWIGGHTRRDRVRNDDI 569
Query: 704 QKKVGVAPIEVKISEHR 754
+++VGVAPIE K+ +HR
Sbjct: 570 RERVGVAPIEEKLMQHR 586
Score = 30.8 bits (68), Expect(5) = 5e-30
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA D K W I +PE
Sbjct: 622 LTWTEAVKRDLKEWNIDKELAADRKGWKCAIHVPE 656
Score = 28.9 bits (63), Expect(5) = 5e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 441 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 479
Score = 20.8 bits (42), Expect(5) = 5e-30
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1
Query: 487 RRRGDIDGDMSH 522
++ GDID D+SH
Sbjct: 478 QKEGDIDEDVSH 489
>ONL92524.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 88.2 bits (217), Expect(4) = 5e-30
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 377 VF 382
+
Sbjct: 800 EY 801
Score = 51.6 bits (122), Expect(4) = 5e-30
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
+KGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 873 IKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 931
Query: 713 VGVAPIEVKISEHR 754
VGVAPIE K+ +HR
Sbjct: 932 VGVAPIEEKLMQHR 945
Score = 32.0 bits (71), Expect(4) = 5e-30
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 981 LTWTEAVKRDLKEWNIDKELAMDRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 5e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSATGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
>AQK72949.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1014
Score = 85.9 bits (211), Expect(4) = 5e-30
Identities = 37/62 (59%), Positives = 50/62 (80%)
Frame = +2
Query: 197 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 376
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGF LSRSKT
Sbjct: 738 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFTLSRSKT 797
Query: 377 VF 382
+
Sbjct: 798 EY 799
Score = 51.6 bits (122), Expect(4) = 5e-30
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = +2
Query: 539 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 712
LKGKFYR +R ML AE C TK +HV ++ + G + +RN DI+++
Sbjct: 871 LKGKFYRTAIRPAMLYGAE-CWPTKIRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIRER 929
Query: 713 VGVAPIEVKISEHR 754
VGVAPIE K+ +HR
Sbjct: 930 VGVAPIEEKLMQHR 943
Score = 33.1 bits (74), Expect(4) = 5e-30
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 858 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 962
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 979 LTWTEAVKRDLKEWNIDKELAVDRKRWKSAIHVPE 1013
Score = 30.0 bits (66), Expect(4) = 5e-30
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 375 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 494
+Y+KC F ++ VPKK +FRYLGS+ QK
Sbjct: 798 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDIFRYLGSMLQK 836