BLASTX nr result

ID: Panax25_contig00029354 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax25_contig00029354
         (410 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_017243797.1 PREDICTED: pentatricopeptide repeat-containing pr...    55   3e-06
KZM98892.1 hypothetical protein DCAR_013746 [Daucus carota subsp...    55   3e-06
KVI02375.1 Pentatricopeptide repeat-containing protein [Cynara c...    54   7e-06
XP_017248663.1 PREDICTED: pentatricopeptide repeat-containing pr...    54   7e-06

>XP_017243797.1 PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic [Daucus carota subsp. sativus]
          Length = 567

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 24/38 (63%), Positives = 35/38 (92%)
 Frame = +3

Query: 3   GEKELAVMVLKELHSRQVMSRNNLERLVLQYDLERFSV 116
           GEKELA+MVL+ELH++QV+S++ +ERLV+QYDL++  V
Sbjct: 530 GEKELAIMVLEELHAKQVISQSTMERLVMQYDLDKLLV 567


>KZM98892.1 hypothetical protein DCAR_013746 [Daucus carota subsp. sativus]
          Length = 575

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 24/38 (63%), Positives = 35/38 (92%)
 Frame = +3

Query: 3   GEKELAVMVLKELHSRQVMSRNNLERLVLQYDLERFSV 116
           GEKELA+MVL+ELH++QV+S++ +ERLV+QYDL++  V
Sbjct: 538 GEKELAIMVLEELHAKQVISQSTMERLVMQYDLDKLLV 575


>KVI02375.1 Pentatricopeptide repeat-containing protein [Cynara cardunculus
           var. scolymus]
          Length = 559

 Score = 54.3 bits (129), Expect = 7e-06
 Identities = 24/36 (66%), Positives = 31/36 (86%)
 Frame = +3

Query: 6   EKELAVMVLKELHSRQVMSRNNLERLVLQYDLERFS 113
           EKELA +VL+ELHSRQVM RN ++RL++QYD E F+
Sbjct: 523 EKELAALVLRELHSRQVMGRNTVDRLLMQYDFEDFA 558


>XP_017248663.1 PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Daucus carota subsp. sativus]
           KZM93575.1 hypothetical protein DCAR_016820 [Daucus
           carota subsp. sativus]
          Length = 567

 Score = 54.3 bits (129), Expect = 7e-06
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +3

Query: 3   GEKELAVMVLKELHSRQVMSRNNLERLVLQYDLERFSV 116
           GEKELAVMVLKEL+ RQV+SR+ +ERLV+QYDL +  V
Sbjct: 530 GEKELAVMVLKELNIRQVISRSTVERLVMQYDLVKLLV 567


Top