BLASTX nr result
ID: Panax25_contig00022598
seq
BLASTX 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Panax25_contig00022598 (483 letters) Database: ./nr 115,041,592 sequences; 42,171,959,267 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value XP_019079284.1 PREDICTED: RNA polymerase II subunit 5-mediating ... 63 1e-08 CBI21871.3 unnamed protein product, partial [Vitis vinifera] 63 1e-08 XP_010656984.1 PREDICTED: RNA polymerase II subunit 5-mediating ... 62 2e-08 >XP_019079284.1 PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Vitis vinifera] Length = 381 Score = 63.2 bits (152), Expect = 1e-08 Identities = 48/138 (34%), Positives = 65/138 (47%), Gaps = 18/138 (13%) Frame = +3 Query: 3 DYIEDAFLEK---------DSPA----DNKRAAVEDEEYARLLSRMXXXXXXXXXXXXXX 143 DY+E++ E+ DSP D+ + A EDEEYAR++ R Sbjct: 153 DYVEESSSERVIERGPPKPDSPRFSGEDSMKVAAEDEEYARMMLRFDELEKEELAAGSGD 212 Query: 144 X--SDELDEVDLKHQPSQLYEDHEVKSLEMDLLSDSLVESKDVHSTTK---LEDHLEQDF 308 DE +E D+ H SQL DH + SLE + L SKD ++TT+ + H E+DF Sbjct: 213 EHDEDEHNEADVDHSLSQLSGDHVLGSLEERQVRKPLHHSKDEYATTEELLSKQHFEEDF 272 Query: 309 RNQLAREASKVQPASKVS 362 NQL E K Q K S Sbjct: 273 ANQLKLEGLKEQSVPKDS 290 >CBI21871.3 unnamed protein product, partial [Vitis vinifera] Length = 393 Score = 63.2 bits (152), Expect = 1e-08 Identities = 48/138 (34%), Positives = 65/138 (47%), Gaps = 18/138 (13%) Frame = +3 Query: 3 DYIEDAFLEK---------DSPA----DNKRAAVEDEEYARLLSRMXXXXXXXXXXXXXX 143 DY+E++ E+ DSP D+ + A EDEEYAR++ R Sbjct: 165 DYVEESSSERVIERGPPKPDSPRFSGEDSMKVAAEDEEYARMMLRFDELEKEELAAGSGD 224 Query: 144 X--SDELDEVDLKHQPSQLYEDHEVKSLEMDLLSDSLVESKDVHSTTK---LEDHLEQDF 308 DE +E D+ H SQL DH + SLE + L SKD ++TT+ + H E+DF Sbjct: 225 EHDEDEHNEADVDHSLSQLSGDHVLGSLEERQVRKPLHHSKDEYATTEELLSKQHFEEDF 284 Query: 309 RNQLAREASKVQPASKVS 362 NQL E K Q K S Sbjct: 285 ANQLKLEGLKEQSVPKDS 302 >XP_010656984.1 PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X1 [Vitis vinifera] Length = 385 Score = 62.4 bits (150), Expect = 2e-08 Identities = 49/143 (34%), Positives = 68/143 (47%), Gaps = 18/143 (12%) Frame = +3 Query: 3 DYIEDAFLEK---------DSPA----DNKRAAVEDEEYARLLSRMXXXXXXXXXXXXXX 143 DY+E++ E+ DSP D+ + A EDEEYAR++ R Sbjct: 153 DYVEESSSERVIERGPPKPDSPRFSGEDSMKVAAEDEEYARMMLRFDELEKEELAAGSGD 212 Query: 144 X--SDELDEVDLKHQPSQLYEDHEVKSLEMDLLSDSLVESKDVHSTTK---LEDHLEQDF 308 DE +E D+ H SQL DH + SLE + L SKD ++TT+ + H E+DF Sbjct: 213 EHDEDEHNEADVDHSLSQLSGDHVLGSLEERQVRKPLHHSKDEYATTEELLSKQHFEEDF 272 Query: 309 RNQLAREASKVQPASKVSASLPK 377 NQL SK+Q S+PK Sbjct: 273 ANQL---KSKIQLEGLKEQSVPK 292