BLASTX nr result
ID: Panax25_contig00007260
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax25_contig00007260
(498 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_002515206.1 PREDICTED: chlorophyll a-b binding protein of LHC... 61 6e-14
AAB87573.1 chlorophyll a/b binding protein of LHCII type I precu... 60 1e-13
XP_008358195.1 PREDICTED: chlorophyll a-b binding protein of LHC... 60 1e-13
XP_008343203.2 PREDICTED: chlorophyll a-b binding protein of LHC... 59 2e-13
AFO67221.1 putative chlorophyll a/b binding protein, partial [Ar... 58 4e-13
OMO82201.1 Chlorophyll A-B binding protein, plant [Corchorus oli... 58 7e-13
XP_011096521.1 PREDICTED: chlorophyll a-b binding protein 21, ch... 57 1e-12
KCW75953.1 hypothetical protein EUGRSUZ_D00321 [Eucalyptus grandis] 57 1e-12
OMO64079.1 Chlorophyll A-B binding protein, plant [Corchorus cap... 56 2e-12
XP_008447450.1 PREDICTED: chlorophyll a-b binding protein of LHC... 56 2e-12
XP_007221496.1 hypothetical protein PRUPE_ppa010066mg [Prunus pe... 55 2e-12
XP_009628755.1 PREDICTED: chlorophyll a-b binding protein 40, ch... 53 7e-12
XP_004148579.1 PREDICTED: chlorophyll a-b binding protein of LHC... 54 7e-12
ACA52202.1 chloroplast chlorophyll A/B-binding protein, partial ... 54 8e-12
ACA52201.1 chloroplast chlorophyll A/B-binding protein, partial ... 54 8e-12
XP_016448715.1 PREDICTED: chlorophyll a-b binding protein 40, ch... 52 9e-12
XP_009795316.1 PREDICTED: chlorophyll a-b binding protein 40, ch... 52 9e-12
XP_009795315.1 PREDICTED: chlorophyll a-b binding protein 40, ch... 52 9e-12
XP_009782924.1 PREDICTED: chlorophyll a-b binding protein 50, ch... 52 9e-12
XP_009618329.1 PREDICTED: chlorophyll a-b binding protein 40, ch... 52 9e-12
>XP_002515206.1 PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Ricinus
communis] EEF47190.1 chlorophyll A/B binding protein,
putative [Ricinus communis]
Length = 267
Score = 61.2 bits (147), Expect(2) = 6e-14
Identities = 32/52 (61%), Positives = 37/52 (71%), Gaps = 4/52 (7%)
Frame = +3
Query: 324 LPATV----GSISMRKTSKAPATSSGSPWYGPDDRMKYLGPFSVVPQRRIPG 467
LPATV G ++MRKT+ PA SSGSPWYGP DR+KYLGPFS P + G
Sbjct: 23 LPATVRSSNGRVTMRKTAGKPAASSGSPWYGP-DRVKYLGPFSGEPPSYLTG 73
Score = 43.1 bits (100), Expect(2) = 6e-14
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 439 PSYLNGEFPGD*GWDTAGLS 498
PSYL GEFPGD GWDTAGLS
Sbjct: 68 PSYLTGEFPGDYGWDTAGLS 87
>AAB87573.1 chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 59.7 bits (143), Expect(2) = 1e-13
Identities = 28/34 (82%), Positives = 29/34 (85%)
Frame = +3
Query: 339 GSISMRKTSKAPATSSGSPWYGPDDRMKYLGPFS 440
G ISMRKT K PA SSGSPWYGP DR+KYLGPFS
Sbjct: 31 GRISMRKTGKKPAASSGSPWYGP-DRVKYLGPFS 63
Score = 43.5 bits (101), Expect(2) = 1e-13
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +1
Query: 436 SPSYLNGEFPGD*GWDTAGLS 498
+PSYL GEFPGD GWDTAGLS
Sbjct: 66 APSYLTGEFPGDYGWDTAGLS 86
>XP_008358195.1 PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like
[Malus domestica]
Length = 265
Score = 59.7 bits (143), Expect(2) = 1e-13
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +3
Query: 339 GSISMRKTSKAPATSSGSPWYGPDDRMKYLGPFS 440
G +SMRKT+K PA SSGSPWYGP DR+KYLGPFS
Sbjct: 30 GRVSMRKTAKKPAVSSGSPWYGP-DRVKYLGPFS 62
Score = 43.5 bits (101), Expect(2) = 1e-13
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +1
Query: 436 SPSYLNGEFPGD*GWDTAGLS 498
+PSYL GEFPGD GWDTAGLS
Sbjct: 65 APSYLTGEFPGDYGWDTAGLS 85
>XP_008343203.2 PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Malus
domestica] XP_008362557.2 PREDICTED: chlorophyll a-b
binding protein of LHCII type 1-like [Malus domestica]
XP_018504406.1 PREDICTED: chlorophyll a-b binding
protein of LHCII type 1-like [Pyrus x bretschneideri]
XP_018505288.1 PREDICTED: chlorophyll a-b binding
protein of LHCII type 1-like [Pyrus x bretschneideri]
XP_018507333.1 PREDICTED: chlorophyll a-b binding
protein of LHCII type 1-like [Pyrus x bretschneideri]
Length = 265
Score = 59.3 bits (142), Expect(2) = 2e-13
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +3
Query: 339 GSISMRKTSKAPATSSGSPWYGPDDRMKYLGPFS 440
G +SMRKT K PA SSGSPWYGP DR+KYLGPFS
Sbjct: 30 GRVSMRKTGKKPAVSSGSPWYGP-DRVKYLGPFS 62
Score = 43.5 bits (101), Expect(2) = 2e-13
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +1
Query: 436 SPSYLNGEFPGD*GWDTAGLS 498
+PSYL GEFPGD GWDTAGLS
Sbjct: 65 APSYLTGEFPGDYGWDTAGLS 85
>AFO67221.1 putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 152
Score = 58.2 bits (139), Expect(2) = 4e-13
Identities = 27/34 (79%), Positives = 28/34 (82%)
Frame = +3
Query: 339 GSISMRKTSKAPATSSGSPWYGPDDRMKYLGPFS 440
G ISMRKT K P SSGSPWYGP DR+KYLGPFS
Sbjct: 31 GRISMRKTGKKPVASSGSPWYGP-DRVKYLGPFS 63
Score = 43.5 bits (101), Expect(2) = 4e-13
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +1
Query: 436 SPSYLNGEFPGD*GWDTAGLS 498
+PSYL GEFPGD GWDTAGLS
Sbjct: 66 APSYLTGEFPGDYGWDTAGLS 86
>OMO82201.1 Chlorophyll A-B binding protein, plant [Corchorus olitorius]
Length = 244
Score = 57.8 bits (138), Expect(2) = 7e-13
Identities = 28/43 (65%), Positives = 31/43 (72%)
Frame = +3
Query: 339 GSISMRKTSKAPATSSGSPWYGPDDRMKYLGPFSVVPQRRIPG 467
G +SMRKT PA SSGSPWYGP DR+KYLGPFS P + G
Sbjct: 29 GRVSMRKTVGKPAASSGSPWYGP-DRVKYLGPFSGEPPSYLTG 70
Score = 43.1 bits (100), Expect(2) = 7e-13
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 439 PSYLNGEFPGD*GWDTAGLS 498
PSYL GEFPGD GWDTAGLS
Sbjct: 65 PSYLTGEFPGDYGWDTAGLS 84
>XP_011096521.1 PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Sesamum indicum]
Length = 286
Score = 57.0 bits (136), Expect(2) = 1e-12
Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +3
Query: 219 RSPTPLHQTTLAPTHLLTICRQRFLQAQSPMFLPWLPATVGS--ISMRKT-SKAPATSSG 389
+S P H TT+A + + + F Q+ P P G+ +SMRKT +K SSG
Sbjct: 10 KSSLPFHSTTMAAS-TMALSSPSFA-GQAVKLSPSAPEITGNGRVSMRKTVAKPKPASSG 67
Query: 390 SPWYGPDDRMKYLGPFSVVPQRRIPG 467
SPWYGPD R+KYLGPFS P + G
Sbjct: 68 SPWYGPD-RVKYLGPFSGEPPSYLTG 92
Score = 43.1 bits (100), Expect(2) = 1e-12
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 439 PSYLNGEFPGD*GWDTAGLS 498
PSYL GEFPGD GWDTAGLS
Sbjct: 87 PSYLTGEFPGDYGWDTAGLS 106
>KCW75953.1 hypothetical protein EUGRSUZ_D00321 [Eucalyptus grandis]
Length = 300
Score = 56.6 bits (135), Expect(2) = 1e-12
Identities = 38/85 (44%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +3
Query: 219 RSPTPLHQTTLAPTHLLTICRQRFLQAQSPMFLPWLPATVGS--ISMRKTSKAPATSSGS 392
RS + +H T A T L+ L Q+ P P +G+ ISMRK + P SSGS
Sbjct: 27 RSSSQIHSTMAASTMALS---SPSLAGQAVKLSPSTPELLGNGRISMRKAVRKPV-SSGS 82
Query: 393 PWYGPDDRMKYLGPFSVVPQRRIPG 467
PWYGP DR KYLGPFS P + G
Sbjct: 83 PWYGP-DRAKYLGPFSGEPPSYLTG 106
Score = 43.1 bits (100), Expect(2) = 1e-12
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 439 PSYLNGEFPGD*GWDTAGLS 498
PSYL GEFPGD GWDTAGLS
Sbjct: 101 PSYLTGEFPGDYGWDTAGLS 120
>OMO64079.1 Chlorophyll A-B binding protein, plant [Corchorus capsularis]
Length = 264
Score = 56.2 bits (134), Expect(2) = 2e-12
Identities = 27/43 (62%), Positives = 30/43 (69%)
Frame = +3
Query: 339 GSISMRKTSKAPATSSGSPWYGPDDRMKYLGPFSVVPQRRIPG 467
G +SMRKT P SSGSPWYGP DR+KYLGPFS P + G
Sbjct: 29 GRVSMRKTVGKPVASSGSPWYGP-DRVKYLGPFSGEPPSYLTG 70
Score = 43.1 bits (100), Expect(2) = 2e-12
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 439 PSYLNGEFPGD*GWDTAGLS 498
PSYL GEFPGD GWDTAGLS
Sbjct: 65 PSYLTGEFPGDYGWDTAGLS 84
>XP_008447450.1 PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like
[Cucumis melo]
Length = 265
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 29/43 (67%), Positives = 32/43 (74%)
Frame = +3
Query: 339 GSISMRKTSKAPATSSGSPWYGPDDRMKYLGPFSVVPQRRIPG 467
G ISMRK+ K PA SSGSPWYGP DR+KYLGPFS P + G
Sbjct: 31 GRISMRKSGK-PAASSGSPWYGP-DRVKYLGPFSGEPPSYLKG 71
Score = 43.1 bits (100), Expect(2) = 2e-12
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 439 PSYLNGEFPGD*GWDTAGLS 498
PSYL GEFPGD GWDTAGLS
Sbjct: 66 PSYLKGEFPGDYGWDTAGLS 85
>XP_007221496.1 hypothetical protein PRUPE_ppa010066mg [Prunus persica]
XP_008227797.1 PREDICTED: chlorophyll a-b binding
protein of LHCII type 1-like [Prunus mume] ONI14720.1
hypothetical protein PRUPE_3G004100 [Prunus persica]
Length = 265
Score = 55.5 bits (132), Expect(2) = 2e-12
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = +3
Query: 339 GSISMRKTSKAPATSSGSPWYGPDDRMKYLGPFS 440
G +SMR+ ++ PA SSGSPWYGP DR+KYLGPFS
Sbjct: 30 GRVSMRRAARKPAVSSGSPWYGP-DRVKYLGPFS 62
Score = 43.5 bits (101), Expect(2) = 2e-12
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +1
Query: 436 SPSYLNGEFPGD*GWDTAGLS 498
+PSYL GEFPGD GWDTAGLS
Sbjct: 65 APSYLTGEFPGDYGWDTAGLS 85
>XP_009628755.1 PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
[Nicotiana tomentosiformis] XP_016447636.1 PREDICTED:
chlorophyll a-b binding protein 40, chloroplastic
[Nicotiana tabacum] XP_016448162.1 PREDICTED:
chlorophyll a-b binding protein 40, chloroplastic
[Nicotiana tabacum] P27495.1 RecName: Full=Chlorophyll
a-b binding protein 40, chloroplastic; AltName:
Full=LHCII type I CAB-40; Short=LHCP; Flags: Precursor
CAA36958.1 unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 52.8 bits (125), Expect(2) = 7e-12
Identities = 26/35 (74%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Frame = +3
Query: 339 GSISMRKT-SKAPATSSGSPWYGPDDRMKYLGPFS 440
G ++MRKT SKA SSGSPWYGPD R+KYLGPFS
Sbjct: 31 GKVTMRKTASKAKTVSSGSPWYGPD-RVKYLGPFS 64
Score = 44.7 bits (104), Expect(2) = 7e-12
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +1
Query: 436 SPSYLNGEFPGD*GWDTAGLS 498
SPSYL GEFPGD GWDTAGLS
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLS 87
>XP_004148579.1 PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like
[Cucumis sativus] KGN58532.1 hypothetical protein
Csa_3G664560 [Cucumis sativus]
Length = 265
Score = 54.3 bits (129), Expect(2) = 7e-12
Identities = 27/43 (62%), Positives = 32/43 (74%)
Frame = +3
Query: 339 GSISMRKTSKAPATSSGSPWYGPDDRMKYLGPFSVVPQRRIPG 467
G ++MRK+ K PA SSGSPWYGP DR+KYLGPFS P + G
Sbjct: 31 GRVTMRKSGK-PAASSGSPWYGP-DRVKYLGPFSGEPPSYLKG 71
Score = 43.1 bits (100), Expect(2) = 7e-12
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 439 PSYLNGEFPGD*GWDTAGLS 498
PSYL GEFPGD GWDTAGLS
Sbjct: 66 PSYLKGEFPGDYGWDTAGLS 85
>ACA52202.1 chloroplast chlorophyll A/B-binding protein, partial [Oenothera
grandiflora]
Length = 118
Score = 53.9 bits (128), Expect(2) = 8e-12
Identities = 27/38 (71%), Positives = 30/38 (78%), Gaps = 2/38 (5%)
Frame = +3
Query: 333 TVGSISMRKTS--KAPATSSGSPWYGPDDRMKYLGPFS 440
T G I+MRKT+ PA SSGSPWYGP DR+KYLGPFS
Sbjct: 15 TTGGITMRKTAGKAKPAVSSGSPWYGP-DRVKYLGPFS 51
Score = 43.5 bits (101), Expect(2) = 8e-12
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +1
Query: 436 SPSYLNGEFPGD*GWDTAGLS 498
+PSYL GEFPGD GWDTAGLS
Sbjct: 54 APSYLTGEFPGDYGWDTAGLS 74
>ACA52201.1 chloroplast chlorophyll A/B-binding protein, partial [Oenothera
elata subsp. hookeri]
Length = 119
Score = 53.9 bits (128), Expect(2) = 8e-12
Identities = 27/38 (71%), Positives = 30/38 (78%), Gaps = 2/38 (5%)
Frame = +3
Query: 333 TVGSISMRKTS--KAPATSSGSPWYGPDDRMKYLGPFS 440
T G I+MRKT+ PA SSGSPWYGP DR+KYLGPFS
Sbjct: 28 TTGGITMRKTAGKAKPAVSSGSPWYGP-DRVKYLGPFS 64
Score = 43.5 bits (101), Expect(2) = 8e-12
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +1
Query: 436 SPSYLNGEFPGD*GWDTAGLS 498
+PSYL GEFPGD GWDTAGLS
Sbjct: 67 APSYLTGEFPGDYGWDTAGLS 87
>XP_016448715.1 PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Nicotiana tabacum]
Length = 267
Score = 52.4 bits (124), Expect(2) = 9e-12
Identities = 26/35 (74%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Frame = +3
Query: 339 GSISMRKT-SKAPATSSGSPWYGPDDRMKYLGPFS 440
G ++MRKT SKA SSGSPWYGP DR+KYLGPFS
Sbjct: 31 GKVTMRKTASKAKPVSSGSPWYGP-DRVKYLGPFS 64
Score = 44.7 bits (104), Expect(2) = 9e-12
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +1
Query: 436 SPSYLNGEFPGD*GWDTAGLS 498
SPSYL GEFPGD GWDTAGLS
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLS 87
>XP_009795316.1 PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Nicotiana sylvestris] BAA25392.1 light harvesting
chlorophyll a/b-binding protein [Nicotiana sylvestris]
Length = 267
Score = 52.4 bits (124), Expect(2) = 9e-12
Identities = 26/35 (74%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Frame = +3
Query: 339 GSISMRKT-SKAPATSSGSPWYGPDDRMKYLGPFS 440
G ++MRKT SKA SSGSPWYGP DR+KYLGPFS
Sbjct: 31 GKVTMRKTASKAKPVSSGSPWYGP-DRVKYLGPFS 64
Score = 44.7 bits (104), Expect(2) = 9e-12
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +1
Query: 436 SPSYLNGEFPGD*GWDTAGLS 498
SPSYL GEFPGD GWDTAGLS
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLS 87
>XP_009795315.1 PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
[Nicotiana sylvestris]
Length = 267
Score = 52.4 bits (124), Expect(2) = 9e-12
Identities = 26/35 (74%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Frame = +3
Query: 339 GSISMRKT-SKAPATSSGSPWYGPDDRMKYLGPFS 440
G ++MRKT SKA SSGSPWYGP DR+KYLGPFS
Sbjct: 31 GKVTMRKTASKAKPVSSGSPWYGP-DRVKYLGPFS 64
Score = 44.7 bits (104), Expect(2) = 9e-12
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +1
Query: 436 SPSYLNGEFPGD*GWDTAGLS 498
SPSYL GEFPGD GWDTAGLS
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLS 87
>XP_009782924.1 PREDICTED: chlorophyll a-b binding protein 50, chloroplastic-like
[Nicotiana sylvestris]
Length = 267
Score = 52.4 bits (124), Expect(2) = 9e-12
Identities = 26/35 (74%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Frame = +3
Query: 339 GSISMRKT-SKAPATSSGSPWYGPDDRMKYLGPFS 440
G ++MRKT SKA SSGSPWYGP DR+KYLGPFS
Sbjct: 31 GKVTMRKTASKAKPVSSGSPWYGP-DRVKYLGPFS 64
Score = 44.7 bits (104), Expect(2) = 9e-12
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +1
Query: 436 SPSYLNGEFPGD*GWDTAGLS 498
SPSYL GEFPGD GWDTAGLS
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLS 87
>XP_009618329.1 PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Nicotiana tomentosiformis] XP_009628756.1 PREDICTED:
chlorophyll a-b binding protein 40, chloroplastic-like
[Nicotiana tomentosiformis]
Length = 267
Score = 52.4 bits (124), Expect(2) = 9e-12
Identities = 26/35 (74%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Frame = +3
Query: 339 GSISMRKT-SKAPATSSGSPWYGPDDRMKYLGPFS 440
G ++MRKT SKA SSGSPWYGP DR+KYLGPFS
Sbjct: 31 GKVTMRKTASKAKPVSSGSPWYGP-DRVKYLGPFS 64
Score = 44.7 bits (104), Expect(2) = 9e-12
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +1
Query: 436 SPSYLNGEFPGD*GWDTAGLS 498
SPSYL GEFPGD GWDTAGLS
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLS 87