BLASTX nr result
ID: Panax24_contig00041216
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00041216
(517 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AIG89932.1 hypothetical protein (mitochondrion) [Capsicum annuum] 73 1e-13
ADV19263.1 DNA-directed RNA polymerase subunit beta-like protein... 71 7e-13
YP_009108749.1 RNA polymerase beta chain [Oncinotis tenuiloba] A... 75 9e-13
ALI91188.1 RpoC2, partial (chloroplast) [Ottoschulzia rhodoxylon] 75 2e-12
ALI91186.1 RpoC2, partial (chloroplast) [Oecopetalum mexicanum] 75 2e-12
ADD31151.1 RNA polymerase beta'' subunit protein (chloroplast) [... 74 2e-12
AIW05341.1 RNA polymerase beta chain (plastid) [Epigynum auritum] 74 2e-12
ANC95046.1 RNA polymerase beta' subunit (chloroplast) [Dunalia s... 74 2e-12
YP_009186020.1 RNA polymerase beta'' subunit (chloroplast) [Gyno... 74 2e-12
ALI91166.1 RpoC2, partial (chloroplast) [Emmotum nitens] 74 3e-12
YP_009240784.1 RNA polymerase beta'' subunit (chloroplast) [Dipl... 74 3e-12
ANS81001.1 DNA-directed RNA polymerase beta subunit (chloroplast... 74 4e-12
YP_009108579.1 RNA polymerase beta chain [Echites umbellatus] AI... 74 4e-12
ANS81286.1 DNA-directed RNA polymerase beta subunit (chloroplast... 74 4e-12
ANS81191.1 DNA-directed RNA polymerase beta subunit (chloroplast... 74 4e-12
ANS80906.1 DNA-directed RNA polymerase beta subunit (chloroplast... 74 4e-12
ANS80811.1 DNA-directed RNA polymerase beta subunit (chloroplast... 74 4e-12
ANS80716.1 DNA-directed RNA polymerase beta subunit (chloroplast... 74 4e-12
ADD31153.1 RNA polymerase beta'' subunit protein (chloroplast) [... 74 4e-12
YP_009049741.1 hypothetical protein (mitochondrion) [Capsicum an... 73 5e-12
>AIG89932.1 hypothetical protein (mitochondrion) [Capsicum annuum]
Length = 124
Score = 73.2 bits (178), Expect = 1e-13
Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YRVVLLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 2 GRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 61
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PS++HN I LET K
Sbjct: 62 LGGVIPVGTGFKGLVHPSKQHNNIPLETKK 91
>ADV19263.1 DNA-directed RNA polymerase subunit beta-like protein, partial
[Helleborus orientalis]
Length = 111
Score = 70.9 bits (172), Expect = 7e-13
Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YRVVLLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 20 GRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 79
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PS++HN I LE K
Sbjct: 80 LGGVIPVGTGFKGLVHPSKQHNNIPLEKKK 109
>YP_009108749.1 RNA polymerase beta chain [Oncinotis tenuiloba] AIW05595.1 RNA
polymerase beta chain (plastid) [Oncinotis tenuiloba]
Length = 1385
Score = 75.5 bits (184), Expect = 9e-13
Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR +LLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1255 GRALEEAIRYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1314
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLVRPS++HNKI LET K
Sbjct: 1315 LGGMIPVGTGFKGLVRPSKQHNKIPLETKK 1344
>ALI91188.1 RpoC2, partial (chloroplast) [Ottoschulzia rhodoxylon]
Length = 1366
Score = 74.7 bits (182), Expect = 2e-12
Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR +LLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1251 GRALEEAICYRAILLGITRASLNTQSFIAEASFQETARVLAKAALRGRIDWLKGLKENVV 1310
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PSR+HNKI LET K
Sbjct: 1311 LGGMIPVGTGFKGLVHPSRKHNKIPLETKK 1340
>ALI91186.1 RpoC2, partial (chloroplast) [Oecopetalum mexicanum]
Length = 1366
Score = 74.7 bits (182), Expect = 2e-12
Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR +LLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1251 GRALEEAICYRAILLGITRASLNTQSFIAEASFQETARVLAKAALRGRIDWLKGLKENVV 1310
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PSR+HNKI LET K
Sbjct: 1311 LGGMIPVGTGFKGLVHPSRKHNKIPLETKK 1340
>ADD31151.1 RNA polymerase beta'' subunit protein (chloroplast) [Dillenia indica]
Length = 1370
Score = 74.3 bits (181), Expect = 2e-12
Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR VLLG+TK+ + +F + SFQ+T RV AK+ L I V
Sbjct: 1257 GRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1316
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PSR+HN I LET K
Sbjct: 1317 LGGMIPVGTGFKGLVHPSRQHNNIPLETKK 1346
>AIW05341.1 RNA polymerase beta chain (plastid) [Epigynum auritum]
Length = 1382
Score = 74.3 bits (181), Expect = 2e-12
Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR +LLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1252 GRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1311
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L GL P+ GFKGLV PS++HNKI LET K
Sbjct: 1312 LGGLIPVGTGFKGLVHPSKQHNKIPLETKK 1341
>ANC95046.1 RNA polymerase beta' subunit (chloroplast) [Dunalia spathulata]
Length = 1392
Score = 74.3 bits (181), Expect = 2e-12
Identities = 44/90 (48%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YRVVLLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1262 GRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1321
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L GL P+ GFKGLV PS++HN I LET K
Sbjct: 1322 LGGLIPVGTGFKGLVHPSKQHNNIPLETKK 1351
>YP_009186020.1 RNA polymerase beta'' subunit (chloroplast) [Gynochthodes
nanlingensis] ALO71340.1 RNA polymerase beta'' subunit
(chloroplast) [Gynochthodes nanlingensis]
Length = 1426
Score = 74.3 bits (181), Expect = 2e-12
Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR +LLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1296 GRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1355
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L GL P+ GFKGLV PS++HNKI LET K
Sbjct: 1356 LGGLIPVGTGFKGLVHPSKQHNKIPLETKK 1385
>ALI91166.1 RpoC2, partial (chloroplast) [Emmotum nitens]
Length = 1366
Score = 73.9 bits (180), Expect = 3e-12
Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR +LLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1251 GRVLEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1310
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PSR+HNKI LET K
Sbjct: 1311 LGGMIPVGTGFKGLVHPSRKHNKIPLETKK 1340
>YP_009240784.1 RNA polymerase beta'' subunit (chloroplast) [Diplopanax stachyanthus]
AJO25204.1 RNA polymerase beta'' subunit (chloroplast)
[Diplopanax stachyanthus]
Length = 1371
Score = 73.9 bits (180), Expect = 3e-12
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR +LLG+TK+ + +F + SFQ+T RV AK+ L I V
Sbjct: 1241 GRALEEAICYRAILLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1300
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PSR+HN I LET K
Sbjct: 1301 LGGMIPVGTGFKGLVHPSRQHNNIPLETKK 1330
>ANS81001.1 DNA-directed RNA polymerase beta subunit (chloroplast) [Ilex
polyneura]
Length = 1381
Score = 73.6 bits (179), Expect = 4e-12
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR VLLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1260 GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALGGRIDWLKGLKENVV 1319
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PSR+HN I LET K
Sbjct: 1320 LGGMIPVGTGFKGLVHPSRQHNNIPLETKK 1349
>YP_009108579.1 RNA polymerase beta chain [Echites umbellatus] AIW05256.1 RNA
polymerase beta chain (plastid) [Echites umbellatus]
Length = 1382
Score = 73.6 bits (179), Expect = 4e-12
Identities = 42/90 (46%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR +LLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1252 GRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1311
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PS++HNKI LET K
Sbjct: 1312 LGGMIPVGTGFKGLVHPSKQHNKIPLETKK 1341
>ANS81286.1 DNA-directed RNA polymerase beta subunit (chloroplast) [Ilex
wilsonii]
Length = 1384
Score = 73.6 bits (179), Expect = 4e-12
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR VLLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1260 GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALGGRIDWLKGLKENVV 1319
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PSR+HN I LET K
Sbjct: 1320 LGGMIPVGTGFKGLVHPSRQHNNIPLETKK 1349
>ANS81191.1 DNA-directed RNA polymerase beta subunit (chloroplast) [Ilex
delavayi]
Length = 1384
Score = 73.6 bits (179), Expect = 4e-12
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR VLLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1260 GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALGGRIDWLKGLKENVV 1319
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PSR+HN I LET K
Sbjct: 1320 LGGMIPVGTGFKGLVHPSRQHNNIPLETKK 1349
>ANS80906.1 DNA-directed RNA polymerase beta subunit (chloroplast) [Ilex
pubescens]
Length = 1384
Score = 73.6 bits (179), Expect = 4e-12
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR VLLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1260 GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALGGRIDWLKGLKENVV 1319
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PSR+HN I LET K
Sbjct: 1320 LGGMIPVGTGFKGLVHPSRQHNNIPLETKK 1349
>ANS80811.1 DNA-directed RNA polymerase beta subunit (chloroplast) [Ilex
szechwanensis]
Length = 1384
Score = 73.6 bits (179), Expect = 4e-12
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR VLLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1260 GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALGGRIDWLKGLKENVV 1319
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PSR+HN I LET K
Sbjct: 1320 LGGMIPVGTGFKGLVHPSRQHNNIPLETKK 1349
>ANS80716.1 DNA-directed RNA polymerase beta subunit (chloroplast) [Ilex
latifolia]
Length = 1384
Score = 73.6 bits (179), Expect = 4e-12
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR VLLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1260 GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALGGRIDWLKGLKENVV 1319
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PSR+HN I LET K
Sbjct: 1320 LGGMIPVGTGFKGLVHPSRQHNNIPLETKK 1349
>ADD31153.1 RNA polymerase beta'' subunit protein (chloroplast) [Ilex cornuta]
ANS81096.1 DNA-directed RNA polymerase beta subunit
(chloroplast) [Ilex sp. XY-2016]
Length = 1384
Score = 73.6 bits (179), Expect = 4e-12
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YR VLLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 1260 GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALGGRIDWLKGLKENVV 1319
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PSR+HN I LET K
Sbjct: 1320 LGGMIPVGTGFKGLVHPSRQHNNIPLETKK 1349
>YP_009049741.1 hypothetical protein (mitochondrion) [Capsicum annuum] AIG90099.1
hypothetical protein (mitochondrion) [Capsicum annuum]
Length = 430
Score = 73.2 bits (178), Expect = 5e-12
Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = +3
Query: 240 GGDLEAAIYYRVVLLGMTKSEYS--NFHIQLSFQKTDRVSAKSTLWDHIXXXXXXXXXFV 413
G LE AI YRVVLLG+T++ + +F + SFQ+T RV AK+ L I V
Sbjct: 308 GRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 367
Query: 414 LEGLYPICNGFKGLVRPSREHNKIHLETTK 503
L G+ P+ GFKGLV PS++HN I LET K
Sbjct: 368 LGGVIPVGTGFKGLVHPSKQHNNIPLETKK 397