BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax24_contig00037937
         (500 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

OMO84905.1 reverse transcriptase [Corchorus capsularis]                47   6e-08
OMO57275.1 reverse transcriptase [Corchorus capsularis]                60   2e-07
OIT02693.1 putative ribonuclease h protein [Nicotiana attenuata]       42   7e-07
OMO54228.1 reverse transcriptase [Corchorus capsularis]                47   2e-06

>OMO84905.1 reverse transcriptase [Corchorus capsularis]
          Length = 734

 Score = 46.6 bits (109), Expect(2) = 6e-08
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
 Frame = +3

Query: 339 IQIHPDEGLIQDCMQLLRRPWIIHVMHTVRQGNR*ADSLAALDHCSNF-VIECNK 500
           +  HP   L+QDC++L++  WI+ + +  R+ NR AD +A L H + + V ECN+
Sbjct: 659 VDTHPCFTLVQDCLELIKGSWIMEIRYIYRERNRCADCMALLAHETAYGVTECNE 713



 Score = 37.4 bits (85), Expect(2) = 6e-08
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = +2

Query: 98  TQYRIPNSVGIGGIMQNERGEWINCFHVRVGMSSVLTAELW 220
           ++ ++ N   +GG++++  G W++ F V +G +S L AELW
Sbjct: 584 SRQQLDNHDSVGGLIRDASGLWVSGFMVNIGFTSSLKAELW 624


>OMO57275.1 reverse transcriptase [Corchorus capsularis]
          Length = 1628

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 51/149 (34%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
 Frame = +3

Query: 63   VVWKGPSMGWLKLNTESQTRL---GLEA*CRMKEVNGSIV--FMLELG*AVF*RQNFGSY 227
            +VW+ P  G L LNT+  +RL      A   +K+ NG  V  F+L +G         GS 
Sbjct: 1461 IVWRPPPDGVLLLNTDGSSRLVDGHASAGGLIKDSNGLWVAGFLLNIGIT-------GSL 1513

Query: 228  -S*LLAIREGITLSLEENPTTEI*-----IIF*KGRHFA*KGDIQIHPDEGLIQDCMQLL 389
             + L  IR+G+ L+   N +  I      ++      F   G I  HP   LI DC++L+
Sbjct: 1514 EAELWGIRQGLFLAKMRNVSRLIIELDAMVVV----QFLRNGVIDSHPCHTLINDCLELI 1569

Query: 390  RRPWIIHVMHTVRQGNR*ADSLAALDHCS 476
            +  WI+ + H  R+GNR AD LA L H S
Sbjct: 1570 KGDWIVDIRHICREGNRCADRLADLAHTS 1598


>OIT02693.1 putative ribonuclease h protein [Nicotiana attenuata]
          Length = 214

 Score = 42.0 bits (97), Expect(2) = 7e-07
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +3

Query: 330 KGDIQIHPDEGLIQDCMQLLRRPWIIHVMHTVRQGNR*ADSLAALDHCSN 479
           + DI+ HPD  LI+DC +L+    I  ++HT+R+GN  AD L+ L    N
Sbjct: 129 RNDIESHPDHDLIEDCTRLMSELKIC-LVHTLREGNNCADHLSKLGRKQN 177



 Score = 38.5 bits (88), Expect(2) = 7e-07
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
 Frame = +2

Query: 110 IPNS--VGIGGIMQNERGEWINCFHVRVGM--SSVLTAELWVI 226
           IPNS   G GG+ ++++G WI  F+ R+ M  +S LT ELW I
Sbjct: 56  IPNSRLSGFGGVARDDKGRWIGGFYGRLSMKATSSLTPELWAI 98


>OMO54228.1 reverse transcriptase [Corchorus capsularis]
          Length = 790

 Score = 47.0 bits (110), Expect(2) = 2e-06
 Identities = 20/41 (48%), Positives = 27/41 (65%)
 Frame = +3

Query: 348 HPDEGLIQDCMQLLRRPWIIHVMHTVRQGNR*ADSLAALDH 470
           HP   LI+DC++L+   WI+ + H  R+GNR AD LA L H
Sbjct: 718 HPCYTLIRDCLELINSDWIVDIRHICREGNRCADHLADLAH 758



 Score = 31.6 bits (70), Expect(2) = 2e-06
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 131 GGIMQNERGEWINCFHVRVGMSSVLTAELWVI 226
           GG+++N  G W+  F +  G +  L AELW I
Sbjct: 651 GGLIRNSEGRWMFGFLLNTGRTGSLEAELWGI 682