BLASTX nr result
ID: Panax24_contig00037689
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00037689
(549 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KZM95685.1 hypothetical protein DCAR_018927 [Daucus carota subsp... 52 7e-10
XP_017249914.1 PREDICTED: ATP-dependent RNA helicase DEAH13-like... 52 7e-10
XP_017249915.1 PREDICTED: ATP-dependent RNA helicase DEAH13-like... 52 7e-10
XP_017249916.1 PREDICTED: ATP-dependent RNA helicase DEAH13-like... 52 7e-10
XP_010652210.1 PREDICTED: ATP-dependent RNA helicase DEAH13 [Vit... 42 8e-06
>KZM95685.1 hypothetical protein DCAR_018927 [Daucus carota subsp. sativus]
Length = 2394
Score = 52.4 bits (124), Expect(2) = 7e-10
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Frame = +1
Query: 214 RGVQFSKAGLELPISERPIKRKXXXXXXXXXXXXKRVQSRRTCISSNSSCPVISEREVLH 393
R VQ SKAGL LP + +P+KRK KR+ C S+ P+I +RE
Sbjct: 954 REVQLSKAGLRLPTNNQPVKRKNNDYTSKYESQSKRLHQNENCDVSSFKDPLIGDREFRQ 1013
Query: 394 YISAC-GSC---VGGSEASLSVKETSYENYRTSALGDLHNSLSISNCNATGIKKSM 549
S+ GS VG E S+ ETS+EN + N LS S + K++
Sbjct: 1014 VDSSIRGSSFVDVGRCETSVQFTETSFENCEMPVPLNQENVLSNSVFTVPKVDKAV 1069
Score = 38.1 bits (87), Expect(2) = 7e-10
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +3
Query: 75 ESRRRRETPS*VSTKKES*RKLQEDKENELLISESVETLE 194
E +++R ++K +KLQEDKE ELLI +S+ETLE
Sbjct: 885 EIQKKRRNTEHSKSQKRKLQKLQEDKEKELLILKSIETLE 924
>XP_017249914.1 PREDICTED: ATP-dependent RNA helicase DEAH13-like isoform X1
[Daucus carota subsp. sativus]
Length = 1553
Score = 52.4 bits (124), Expect(2) = 7e-10
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Frame = +1
Query: 214 RGVQFSKAGLELPISERPIKRKXXXXXXXXXXXXKRVQSRRTCISSNSSCPVISEREVLH 393
R VQ SKAGL LP + +P+KRK KR+ C S+ P+I +RE
Sbjct: 113 REVQLSKAGLRLPTNNQPVKRKNNDYTSKYESQSKRLHQNENCDVSSFKDPLIGDREFRQ 172
Query: 394 YISAC-GSC---VGGSEASLSVKETSYENYRTSALGDLHNSLSISNCNATGIKKSM 549
S+ GS VG E S+ ETS+EN + N LS S + K++
Sbjct: 173 VDSSIRGSSFVDVGRCETSVQFTETSFENCEMPVPLNQENVLSNSVFTVPKVDKAV 228
Score = 38.1 bits (87), Expect(2) = 7e-10
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +3
Query: 75 ESRRRRETPS*VSTKKES*RKLQEDKENELLISESVETLE 194
E +++R ++K +KLQEDKE ELLI +S+ETLE
Sbjct: 44 EIQKKRRNTEHSKSQKRKLQKLQEDKEKELLILKSIETLE 83
>XP_017249915.1 PREDICTED: ATP-dependent RNA helicase DEAH13-like isoform X2
[Daucus carota subsp. sativus]
Length = 1543
Score = 52.4 bits (124), Expect(2) = 7e-10
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Frame = +1
Query: 214 RGVQFSKAGLELPISERPIKRKXXXXXXXXXXXXKRVQSRRTCISSNSSCPVISEREVLH 393
R VQ SKAGL LP + +P+KRK KR+ C S+ P+I +RE
Sbjct: 103 REVQLSKAGLRLPTNNQPVKRKNNDYTSKYESQSKRLHQNENCDVSSFKDPLIGDREFRQ 162
Query: 394 YISAC-GSC---VGGSEASLSVKETSYENYRTSALGDLHNSLSISNCNATGIKKSM 549
S+ GS VG E S+ ETS+EN + N LS S + K++
Sbjct: 163 VDSSIRGSSFVDVGRCETSVQFTETSFENCEMPVPLNQENVLSNSVFTVPKVDKAV 218
Score = 38.1 bits (87), Expect(2) = 7e-10
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +3
Query: 75 ESRRRRETPS*VSTKKES*RKLQEDKENELLISESVETLE 194
E +++R ++K +KLQEDKE ELLI +S+ETLE
Sbjct: 34 EIQKKRRNTEHSKSQKRKLQKLQEDKEKELLILKSIETLE 73
>XP_017249916.1 PREDICTED: ATP-dependent RNA helicase DEAH13-like isoform X3
[Daucus carota subsp. sativus]
Length = 1210
Score = 52.4 bits (124), Expect(2) = 7e-10
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Frame = +1
Query: 214 RGVQFSKAGLELPISERPIKRKXXXXXXXXXXXXKRVQSRRTCISSNSSCPVISEREVLH 393
R VQ SKAGL LP + +P+KRK KR+ C S+ P+I +RE
Sbjct: 113 REVQLSKAGLRLPTNNQPVKRKNNDYTSKYESQSKRLHQNENCDVSSFKDPLIGDREFRQ 172
Query: 394 YISAC-GSC---VGGSEASLSVKETSYENYRTSALGDLHNSLSISNCNATGIKKSM 549
S+ GS VG E S+ ETS+EN + N LS S + K++
Sbjct: 173 VDSSIRGSSFVDVGRCETSVQFTETSFENCEMPVPLNQENVLSNSVFTVPKVDKAV 228
Score = 38.1 bits (87), Expect(2) = 7e-10
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +3
Query: 75 ESRRRRETPS*VSTKKES*RKLQEDKENELLISESVETLE 194
E +++R ++K +KLQEDKE ELLI +S+ETLE
Sbjct: 44 EIQKKRRNTEHSKSQKRKLQKLQEDKEKELLILKSIETLE 83
>XP_010652210.1 PREDICTED: ATP-dependent RNA helicase DEAH13 [Vitis vinifera]
XP_010652211.1 PREDICTED: ATP-dependent RNA helicase
DEAH13 [Vitis vinifera] XP_010652212.1 PREDICTED:
ATP-dependent RNA helicase DEAH13 [Vitis vinifera]
XP_010652213.1 PREDICTED: ATP-dependent RNA helicase
DEAH13 [Vitis vinifera] XP_019076826.1 PREDICTED:
ATP-dependent RNA helicase DEAH13 [Vitis vinifera]
XP_019076827.1 PREDICTED: ATP-dependent RNA helicase
DEAH13 [Vitis vinifera]
Length = 1337
Score = 42.0 bits (97), Expect(2) = 8e-06
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Frame = +1
Query: 214 RGVQFSKAGLELPISERPIKRKXXXXXXXXXXXXKRVQSRRTCISSNSSCPVISEREVLH 393
R V+FSKAGLE+P S+RP K + ++QS++ S++ P + +REVL
Sbjct: 116 RAVRFSKAGLEMPHSDRPFKSQ----DGEMEPDSNKIQSKQEFDESDAMWPRMVQREVLS 171
Query: 394 YIS---------ACGSCVGGS---EASLSVKETSYENYRTSALGDLHNSLSIS 516
S C + + + +L KE S +NY TS + D NS S
Sbjct: 172 NASISLGFTSELVCSTELAVNSRHSPTLPAKEVSEKNYDTS-MQDRRNSTPTS 223
Score = 34.7 bits (78), Expect(2) = 8e-06
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 75 ESRRRRETPS*VSTKKES*RKLQEDKENELLISESVETLELKLFELEGSAVLQ 233
E + +T +++K +KL+E+KE LL+S+S+ETLE + ++LQ
Sbjct: 47 EKFKTNKTRKLSASQKRKLKKLEEEKEKSLLLSKSIETLEKYKIREDAFSLLQ 99