BLASTX nr result

ID: Panax24_contig00037115 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax24_contig00037115
         (543 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_010659863.1 PREDICTED: DNA polymerase zeta catalytic subunit ...   103   2e-22
XP_019080602.1 PREDICTED: DNA polymerase zeta catalytic subunit ...   103   2e-22
XP_010659861.1 PREDICTED: DNA polymerase zeta catalytic subunit ...   103   2e-22
XP_010659860.1 PREDICTED: DNA polymerase zeta catalytic subunit ...   103   2e-22
XP_017258892.1 PREDICTED: DNA polymerase zeta catalytic subunit ...    80   2e-14
XP_017258865.1 PREDICTED: DNA polymerase zeta catalytic subunit ...    80   2e-14
XP_017258857.1 PREDICTED: DNA polymerase zeta catalytic subunit ...    80   2e-14
XP_017258851.1 PREDICTED: DNA polymerase zeta catalytic subunit ...    80   2e-14

>XP_010659863.1 PREDICTED: DNA polymerase zeta catalytic subunit isoform X4 [Vitis
            vinifera]
          Length = 1806

 Score =  103 bits (257), Expect = 2e-22
 Identities = 68/182 (37%), Positives = 94/182 (51%), Gaps = 2/182 (1%)
 Frame = -3

Query: 541  TENQNSASQIGCCENTNCEDCNLVRPSMFDSSCKPDPCC--KKLKFYGDDDLLDAENVLP 368
            TE ++SA+ +   E +NC++           +CKPDP    + LKF   D     E +  
Sbjct: 586  TEVRDSAASMVDFEFSNCKEY----------ACKPDPSTDVQFLKFDTGDKHFVDERLKQ 635

Query: 367  TYAVFSSCLSTCPIESEVCDKDGYISKSENTSTIPTQRVSEVSVENPEHVDLITRTTLMQ 188
            T A  SSCLS  P E E+  +DGY  KS        + + E+S EN E  D  T TTL Q
Sbjct: 636  TKASASSCLSNSPFEHEMVCRDGYTCKSGRDCRTSIECLPEISSENLEGWDGATGTTLSQ 695

Query: 187  SSYLGVGQLATNTCVLGSDSLISMVANTEVNSMELIGMGFYKKPPLLQWTDGISENAPVS 8
                G G    +  + G+ +L+S V N E   +ELIGM F++KPP + WTDG  +NA +S
Sbjct: 696  FKNCGGGDWGNDAGLSGTHNLVSTVVNMEAKPVELIGMTFHQKPPTVDWTDGTFDNALLS 755

Query: 7    SA 2
             A
Sbjct: 756  PA 757


>XP_019080602.1 PREDICTED: DNA polymerase zeta catalytic subunit isoform X3 [Vitis
            vinifera]
          Length = 1874

 Score =  103 bits (257), Expect = 2e-22
 Identities = 68/182 (37%), Positives = 94/182 (51%), Gaps = 2/182 (1%)
 Frame = -3

Query: 541  TENQNSASQIGCCENTNCEDCNLVRPSMFDSSCKPDPCC--KKLKFYGDDDLLDAENVLP 368
            TE ++SA+ +   E +NC++           +CKPDP    + LKF   D     E +  
Sbjct: 654  TEVRDSAASMVDFEFSNCKEY----------ACKPDPSTDVQFLKFDTGDKHFVDERLKQ 703

Query: 367  TYAVFSSCLSTCPIESEVCDKDGYISKSENTSTIPTQRVSEVSVENPEHVDLITRTTLMQ 188
            T A  SSCLS  P E E+  +DGY  KS        + + E+S EN E  D  T TTL Q
Sbjct: 704  TKASASSCLSNSPFEHEMVCRDGYTCKSGRDCRTSIECLPEISSENLEGWDGATGTTLSQ 763

Query: 187  SSYLGVGQLATNTCVLGSDSLISMVANTEVNSMELIGMGFYKKPPLLQWTDGISENAPVS 8
                G G    +  + G+ +L+S V N E   +ELIGM F++KPP + WTDG  +NA +S
Sbjct: 764  FKNCGGGDWGNDAGLSGTHNLVSTVVNMEAKPVELIGMTFHQKPPTVDWTDGTFDNALLS 823

Query: 7    SA 2
             A
Sbjct: 824  PA 825


>XP_010659861.1 PREDICTED: DNA polymerase zeta catalytic subunit isoform X2 [Vitis
            vinifera]
          Length = 2031

 Score =  103 bits (257), Expect = 2e-22
 Identities = 68/182 (37%), Positives = 94/182 (51%), Gaps = 2/182 (1%)
 Frame = -3

Query: 541  TENQNSASQIGCCENTNCEDCNLVRPSMFDSSCKPDPCC--KKLKFYGDDDLLDAENVLP 368
            TE ++SA+ +   E +NC++           +CKPDP    + LKF   D     E +  
Sbjct: 837  TEVRDSAASMVDFEFSNCKEY----------ACKPDPSTDVQFLKFDTGDKHFVDERLKQ 886

Query: 367  TYAVFSSCLSTCPIESEVCDKDGYISKSENTSTIPTQRVSEVSVENPEHVDLITRTTLMQ 188
            T A  SSCLS  P E E+  +DGY  KS        + + E+S EN E  D  T TTL Q
Sbjct: 887  TKASASSCLSNSPFEHEMVCRDGYTCKSGRDCRTSIECLPEISSENLEGWDGATGTTLSQ 946

Query: 187  SSYLGVGQLATNTCVLGSDSLISMVANTEVNSMELIGMGFYKKPPLLQWTDGISENAPVS 8
                G G    +  + G+ +L+S V N E   +ELIGM F++KPP + WTDG  +NA +S
Sbjct: 947  FKNCGGGDWGNDAGLSGTHNLVSTVVNMEAKPVELIGMTFHQKPPTVDWTDGTFDNALLS 1006

Query: 7    SA 2
             A
Sbjct: 1007 PA 1008


>XP_010659860.1 PREDICTED: DNA polymerase zeta catalytic subunit isoform X1 [Vitis
            vinifera]
          Length = 2057

 Score =  103 bits (257), Expect = 2e-22
 Identities = 68/182 (37%), Positives = 94/182 (51%), Gaps = 2/182 (1%)
 Frame = -3

Query: 541  TENQNSASQIGCCENTNCEDCNLVRPSMFDSSCKPDPCC--KKLKFYGDDDLLDAENVLP 368
            TE ++SA+ +   E +NC++           +CKPDP    + LKF   D     E +  
Sbjct: 837  TEVRDSAASMVDFEFSNCKEY----------ACKPDPSTDVQFLKFDTGDKHFVDERLKQ 886

Query: 367  TYAVFSSCLSTCPIESEVCDKDGYISKSENTSTIPTQRVSEVSVENPEHVDLITRTTLMQ 188
            T A  SSCLS  P E E+  +DGY  KS        + + E+S EN E  D  T TTL Q
Sbjct: 887  TKASASSCLSNSPFEHEMVCRDGYTCKSGRDCRTSIECLPEISSENLEGWDGATGTTLSQ 946

Query: 187  SSYLGVGQLATNTCVLGSDSLISMVANTEVNSMELIGMGFYKKPPLLQWTDGISENAPVS 8
                G G    +  + G+ +L+S V N E   +ELIGM F++KPP + WTDG  +NA +S
Sbjct: 947  FKNCGGGDWGNDAGLSGTHNLVSTVVNMEAKPVELIGMTFHQKPPTVDWTDGTFDNALLS 1006

Query: 7    SA 2
             A
Sbjct: 1007 PA 1008


>XP_017258892.1 PREDICTED: DNA polymerase zeta catalytic subunit isoform X4 [Daucus
           carota subsp. sativus]
          Length = 1606

 Score = 80.5 bits (197), Expect = 2e-14
 Identities = 53/114 (46%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
 Frame = -3

Query: 541 TENQNSASQIGCCENTNCED----CNLVRPSMFDSSCKPDPCCKKLKFYGDDDLLDAENV 374
           +ENQNSA+++G  EN   ED      +V P  F  S   DPCC+KL F  DD LL+ E V
Sbjct: 466 SENQNSAAELGSFENKTGEDLKDVSKIVTPLSFSRS---DPCCRKLNF-DDDILLETEKV 521

Query: 373 LPTYAVFSSCLSTCPIESEVCDKDGYISKSENTSTIPTQRVSEVSVENPEHVDL 212
           LPT AV SS   T   ++ V D  G+ S S +T+  P QR  EVS ENP  +DL
Sbjct: 522 LPTAAVCSSQPCTLQPQNIVFDNHGHFSGSHSTN--PLQREMEVSAENPSGLDL 573


>XP_017258865.1 PREDICTED: DNA polymerase zeta catalytic subunit isoform X3 [Daucus
            carota subsp. sativus] XP_017258874.1 PREDICTED: DNA
            polymerase zeta catalytic subunit isoform X3 [Daucus
            carota subsp. sativus] XP_017258884.1 PREDICTED: DNA
            polymerase zeta catalytic subunit isoform X3 [Daucus
            carota subsp. sativus]
          Length = 1828

 Score = 80.5 bits (197), Expect = 2e-14
 Identities = 53/114 (46%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
 Frame = -3

Query: 541  TENQNSASQIGCCENTNCED----CNLVRPSMFDSSCKPDPCCKKLKFYGDDDLLDAENV 374
            +ENQNSA+++G  EN   ED      +V P  F  S   DPCC+KL F  DD LL+ E V
Sbjct: 688  SENQNSAAELGSFENKTGEDLKDVSKIVTPLSFSRS---DPCCRKLNF-DDDILLETEKV 743

Query: 373  LPTYAVFSSCLSTCPIESEVCDKDGYISKSENTSTIPTQRVSEVSVENPEHVDL 212
            LPT AV SS   T   ++ V D  G+ S S +T+  P QR  EVS ENP  +DL
Sbjct: 744  LPTAAVCSSQPCTLQPQNIVFDNHGHFSGSHSTN--PLQREMEVSAENPSGLDL 795


>XP_017258857.1 PREDICTED: DNA polymerase zeta catalytic subunit isoform X2 [Daucus
            carota subsp. sativus]
          Length = 1855

 Score = 80.5 bits (197), Expect = 2e-14
 Identities = 53/114 (46%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
 Frame = -3

Query: 541  TENQNSASQIGCCENTNCED----CNLVRPSMFDSSCKPDPCCKKLKFYGDDDLLDAENV 374
            +ENQNSA+++G  EN   ED      +V P  F  S   DPCC+KL F  DD LL+ E V
Sbjct: 775  SENQNSAAELGSFENKTGEDLKDVSKIVTPLSFSRS---DPCCRKLNF-DDDILLETEKV 830

Query: 373  LPTYAVFSSCLSTCPIESEVCDKDGYISKSENTSTIPTQRVSEVSVENPEHVDL 212
            LPT AV SS   T   ++ V D  G+ S S +T+  P QR  EVS ENP  +DL
Sbjct: 831  LPTAAVCSSQPCTLQPQNIVFDNHGHFSGSHSTN--PLQREMEVSAENPSGLDL 882


>XP_017258851.1 PREDICTED: DNA polymerase zeta catalytic subunit isoform X1 [Daucus
            carota subsp. sativus] KZN09158.1 hypothetical protein
            DCAR_001814 [Daucus carota subsp. sativus]
          Length = 1915

 Score = 80.5 bits (197), Expect = 2e-14
 Identities = 53/114 (46%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
 Frame = -3

Query: 541  TENQNSASQIGCCENTNCED----CNLVRPSMFDSSCKPDPCCKKLKFYGDDDLLDAENV 374
            +ENQNSA+++G  EN   ED      +V P  F  S   DPCC+KL F  DD LL+ E V
Sbjct: 775  SENQNSAAELGSFENKTGEDLKDVSKIVTPLSFSRS---DPCCRKLNF-DDDILLETEKV 830

Query: 373  LPTYAVFSSCLSTCPIESEVCDKDGYISKSENTSTIPTQRVSEVSVENPEHVDL 212
            LPT AV SS   T   ++ V D  G+ S S +T+  P QR  EVS ENP  +DL
Sbjct: 831  LPTAAVCSSQPCTLQPQNIVFDNHGHFSGSHSTN--PLQREMEVSAENPSGLDL 882


Top