BLASTX nr result
ID: Panax24_contig00036020
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00036020
(714 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
JAV01726.1 Retrovirus-related Pol polyprotein from transposon TN... 295 3e-98
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 293 3e-90
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 290 2e-88
BAA22288.1 polyprotein [Oryza australiensis] 293 3e-88
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 288 2e-86
AAV85747.1 Integrase core domain, putative [Oryza sativa Japonic... 281 5e-84
ABG22008.1 retrotransposon protein, putative, Ty1-copia subclass... 274 8e-83
KYP76581.1 Retrovirus-related Pol polyprotein from transposon TN... 253 2e-82
CAN83735.1 hypothetical protein VITISV_000740 [Vitis vinifera] 254 3e-82
CAN69397.1 hypothetical protein VITISV_021035 [Vitis vinifera] 265 3e-81
ABA97342.2 retrotransposon protein, putative, Ty1-copia subclass... 271 5e-81
OAO89438.1 hypothetical protein AXX17_ATUG00590 [Arabidopsis tha... 250 1e-80
KYP76577.1 Retrovirus-related Pol polyprotein from transposon TN... 254 1e-80
AAP03364.1 putative polyprotein [Oryza sativa Japonica Group] 261 6e-80
OAO97959.1 hypothetical protein AXX17_AT4G08610 [Arabidopsis tha... 258 2e-79
ABF96491.1 retrotransposon protein, putative, Ty1-copia subclass... 261 5e-79
AAP44605.1 putative polyprotein [Oryza sativa Japonica Group] 266 8e-79
ABF97047.1 retrotransposon protein, putative, Ty1-copia subclass... 266 1e-78
EXX50149.1 gag-pol fusion protein [Rhizophagus irregularis DAOM ... 262 4e-77
KYP68473.1 Retrovirus-related Pol polyprotein from transposon TN... 238 1e-76
>JAV01726.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Noccaea caerulescens]
Length = 243
Score = 295 bits (755), Expect = 3e-98
Identities = 146/228 (64%), Positives = 179/228 (78%), Gaps = 5/228 (2%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
+RMS+IPYASAIGSIMY M+CTRPD+A ALS+TS YQS+PGE HW AVKNILK+L TKD
Sbjct: 13 ERMSRIPYASAIGSIMYAMLCTRPDIACALSMTSIYQSDPGESHWTAVKNILKYLRNTKD 72
Query: 181 MFLVYGGS-ELKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTET 357
FLVYGGS EL L +TD SFQTD++D +S S ++ LNGGAVSWKSSKQ TVADS TE
Sbjct: 73 KFLVYGGSDELVLSGYTDASFQTDKDDFRSQSGFIFCLNGGAVSWKSSKQSTVADSTTEA 132
Query: 358 EYIAA----KEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRR 525
EYIAA KEAVW++KF+TEL V+P+I GPV L+CDN A+AQ KE SHQKSKH+ RR
Sbjct: 133 EYIAASEAAKEAVWIRKFVTELGVIPSISGPVDLYCDNNGAIAQAKEPRSHQKSKHIERR 192
Query: 526 FHLIREIIERGDVTLERVDSQDNIADPFTKALTQQQFDRHLEKKGMRY 669
+HLIR+I++RGDV + RV + N+ADP TK L + + + H G+R+
Sbjct: 193 YHLIRDIVDRGDVKISRVSTDANVADPLTKPLPRPKHESHTTAIGIRF 240
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 293 bits (751), Expect = 3e-90
Identities = 147/228 (64%), Positives = 179/228 (78%), Gaps = 5/228 (2%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
D+MS IPYASAIGSIMY MICTRPDV++ALSVTSRYQ++P E HW AVKNILK+L RTKD
Sbjct: 667 DKMSDIPYASAIGSIMYAMICTRPDVSYALSVTSRYQADPSEGHWTAVKNILKYLRRTKD 726
Query: 181 MFLVYGGSE-LKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTET 357
+FLVYGG E L + +TD SFQTD++D +S S +V LNGGAVSWKSSKQ+TVADS TE
Sbjct: 727 VFLVYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVADSTTEA 786
Query: 358 EYIAA----KEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRR 525
EYIAA KE VW++ FITEL +VP+ P+ L+CDN A+AQ KE SHQKSKH+LRR
Sbjct: 787 EYIAASEAAKEGVWIRNFITELGMVPSASSPMDLYCDNNGAIAQAKEPRSHQKSKHILRR 846
Query: 526 FHLIREIIERGDVTLERVDSQDNIADPFTKALTQQQFDRHLEKKGMRY 669
+HLIRE+++RGDV + +V + NIADP TK LTQ + + H G+RY
Sbjct: 847 YHLIRELVDRGDVKICKVHTDLNIADPLTKPLTQPKHEAHTRAIGIRY 894
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 290 bits (741), Expect = 2e-88
Identities = 147/228 (64%), Positives = 176/228 (77%), Gaps = 5/228 (2%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
+RMSKIPYASAIGSIMY M+ TRPDVA ALS+TSRYQS+PGE HW V+NI K+L RTKD
Sbjct: 734 ERMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKD 793
Query: 181 MFLVYGGSE-LKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTET 357
FLVYGGSE L + +TD SFQTD++D +S S + LNGGAVSWKS+KQ TVADS TE
Sbjct: 794 KFLVYGGSEELVVSGYTDASFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEA 853
Query: 358 EYIAA----KEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRR 525
EYIAA KE VW++KFITEL VVP+I GP+ L+CDN A+AQ KE SHQKSKH+ RR
Sbjct: 854 EYIAASEAAKEVVWIRKFITELGVVPSISGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRR 913
Query: 526 FHLIREIIERGDVTLERVDSQDNIADPFTKALTQQQFDRHLEKKGMRY 669
+HLIREII+RGDV + RV + N+AD FTK L Q + + H G+R+
Sbjct: 914 YHLIREIIDRGDVKISRVSTDANVADHFTKPLPQPKHESHTTAIGIRF 961
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 293 bits (751), Expect = 3e-88
Identities = 147/231 (63%), Positives = 179/231 (77%), Gaps = 5/231 (2%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
++M +PYASAIGSIMY M+CTRPDV++ALS TSRYQS+PGE HW AVKNILK+L RTKD
Sbjct: 1087 NKMGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKD 1146
Query: 181 MFLVYGGSE-LKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTET 357
MFLVYGG E L + +TD SFQTD++D +S S +V LNGGAVSWKSSKQ TVADS TE
Sbjct: 1147 MFLVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEA 1206
Query: 358 EYIAA----KEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRR 525
EYIAA KEAVW+KKF++EL V+ + GP+ L+CDN A+AQ KE SHQKSKH+LRR
Sbjct: 1207 EYIAASEAAKEAVWIKKFVSELGVMTSTTGPMSLYCDNSGAIAQAKEPRSHQKSKHILRR 1266
Query: 526 FHLIREIIERGDVTLERVDSQDNIADPFTKALTQQQFDRHLEKKGMRYHGD 678
+HLIREI++RGDV + +V + NIADP TK L Q + + H G+RY D
Sbjct: 1267 YHLIREIVDRGDVKICKVHTDLNIADPLTKPLPQPKHEAHTRAMGIRYLHD 1317
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 288 bits (738), Expect = 2e-86
Identities = 144/231 (62%), Positives = 178/231 (77%), Gaps = 5/231 (2%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
DRM+ IPYASAIGSIMY MICTR DV++ALSVTSRYQ++PGE HW AVKNILK+L RTKD
Sbjct: 1083 DRMNGIPYASAIGSIMYAMICTRQDVSYALSVTSRYQADPGECHWTAVKNILKYLRRTKD 1142
Query: 181 MFLVYGGSE-LKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTET 357
FL+YGG E L + +TD SFQTD++D +S S +V LNGGAVSWKSSKQ+TVADS T+
Sbjct: 1143 AFLIYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVADSTTKA 1202
Query: 358 EYIAA----KEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRR 525
EYIAA KE VW++ FI EL VVP+ P+ L+CDN A+AQ KE SHQKSKH+LRR
Sbjct: 1203 EYIAASEAAKEGVWIRNFIAELGVVPSASSPMDLYCDNNGAIAQAKEPRSHQKSKHILRR 1262
Query: 526 FHLIREIIERGDVTLERVDSQDNIADPFTKALTQQQFDRHLEKKGMRYHGD 678
+HLIRE+++RGDV + ++ + N+ADP TK LTQ + + H G+RY D
Sbjct: 1263 YHLIRELVDRGDVKICKIHTDLNVADPLTKPLTQPKHEAHTRAIGIRYLND 1313
>AAV85747.1 Integrase core domain, putative [Oryza sativa Japonica Group]
AAX92956.1 retrotransposon protein, putative, Ty1-copia
sub-class [Oryza sativa Japonica Group] ABA92827.2
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1184
Score = 281 bits (718), Expect = 5e-84
Identities = 138/227 (60%), Positives = 172/227 (75%), Gaps = 1/227 (0%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
++MS IPYASAIGSIMY M+CTRPDV++ALS TSRYQS+PGE HW AVKNILK+L RTKD
Sbjct: 958 NKMSVIPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKD 1017
Query: 181 MFLVYGGSE-LKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTET 357
MFL YGG E L + +TD SFQ D++D +S S +V LNGGAVSWKSSKQ V DS TE
Sbjct: 1018 MFLAYGGQEELVVNGYTDASFQIDKDDFRSQSGFVFCLNGGAVSWKSSKQDIVVDSTTEA 1077
Query: 358 EYIAAKEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRRFHLI 537
EYIAA EAVW+KKF+++L V+ + + L+CDN A+AQ KE SHQKSKH+LR++HLI
Sbjct: 1078 EYIAASEAVWIKKFVSQLGVMTSASSSMDLYCDNSGAIAQAKEPRSHQKSKHILRQYHLI 1137
Query: 538 REIIERGDVTLERVDSQDNIADPFTKALTQQQFDRHLEKKGMRYHGD 678
REI+ RGDV + ++ + N+ADP TK L Q + + H G+RY D
Sbjct: 1138 REIVGRGDVKICKIHTDLNVADPLTKPLPQPKHEAHTRAMGIRYIHD 1184
>ABG22008.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 274 bits (701), Expect = 8e-83
Identities = 135/220 (61%), Positives = 171/220 (77%), Gaps = 5/220 (2%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
++MS IPYASAIGSIMY M+CTRPDV +ALS TS+YQS+PGE HW AVKNILK+L RTKD
Sbjct: 711 NKMSVIPYASAIGSIMYAMLCTRPDVPYALSATSQYQSDPGESHWIAVKNILKYLRRTKD 770
Query: 181 MFLVYGG-SELKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTET 357
MFL+YGG EL + ++TD SFQTD++D +S S +V LNGGAVSWKSSKQ TVADS TE
Sbjct: 771 MFLIYGGQEELVVNNYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEA 830
Query: 358 EYI----AAKEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRR 525
EYI AAKEA W+KKF+++L V+ + P+ L+CDN A+AQ KE SH+KSKH+LRR
Sbjct: 831 EYIAASEAAKEAAWIKKFVSQLGVMTSASSPMDLYCDNSGAIAQAKEPRSHRKSKHILRR 890
Query: 526 FHLIREIIERGDVTLERVDSQDNIADPFTKALTQQQFDRH 645
+HLIREI+ RGDV + ++ + N+ DP TK L + + + H
Sbjct: 891 YHLIREIVGRGDVKICKIHTDLNVVDPLTKPLPRPKHETH 930
>KYP76581.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 184
Score = 253 bits (645), Expect = 2e-82
Identities = 125/183 (68%), Positives = 148/183 (80%), Gaps = 4/183 (2%)
Frame = +1
Query: 7 MSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKDMF 186
M+++PYASA+G+IMY M CTRPDVA A V SRYQ+NPGEE+WK VK ILK+L RT+D F
Sbjct: 1 MNRVPYASAVGAIMYIMTCTRPDVAFAPGVVSRYQANPGEENWKVVKTILKYLRRTQDQF 60
Query: 187 LVYGGSELKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTETEYI 366
L+YGG+EL L+ +TD SF +D++DSKS+S YV TL GGAVSWKSSKQ TVADS TE EYI
Sbjct: 61 LIYGGTELMLKGYTDASFASDKDDSKSISGYVFTLYGGAVSWKSSKQATVADSTTEAEYI 120
Query: 367 ----AAKEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRRFHL 534
AAKEAVWMKKFITEL VVP+I P+ L C+N A+AQ KE SHQKSKH+LRR+ L
Sbjct: 121 AASDAAKEAVWMKKFITELGVVPSIEEPISLLCNNNGAIAQAKEPRSHQKSKHILRRYQL 180
Query: 535 IRE 543
IRE
Sbjct: 181 IRE 183
>CAN83735.1 hypothetical protein VITISV_000740 [Vitis vinifera]
Length = 230
Score = 254 bits (648), Expect = 3e-82
Identities = 119/224 (53%), Positives = 162/224 (72%), Gaps = 4/224 (1%)
Frame = +1
Query: 7 MSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKDMF 186
M ++PYASA+GS+MY M+CTRPD+ A+ V SRYQSNPG + W AVK+ILK+L RT++
Sbjct: 1 MRRVPYASAVGSLMYAMLCTRPDICFAVGVVSRYQSNPGLDQWVAVKHILKYLRRTRNYM 60
Query: 187 LVYGGSELKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTETEYI 366
LVY G EL +TD FQ+D++ KS SR V TL GGA+ W+S KQ V DS E EY+
Sbjct: 61 LVYSGRELIPIGYTDSDFQSDRDSRKSTSRAVFTLGGGAIIWRSVKQTCVVDSTMEAEYV 120
Query: 367 ----AAKEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRRFHL 534
AAKEAVW+++F+ EL+VVPN+ P+ L+CDN AVA KE +H+K KH+ R+FHL
Sbjct: 121 AACEAAKEAVWLREFLKELEVVPNMHEPIRLYCDNSGAVANAKEPRNHRKGKHIERKFHL 180
Query: 535 IREIIERGDVTLERVDSQDNIADPFTKALTQQQFDRHLEKKGMR 666
+R+++ RGDV++E + +NIADPFTK L + ++HLE G+R
Sbjct: 181 VRKVVSRGDVSVENITYANNIADPFTKTLPARSLEQHLEGMGLR 224
>CAN69397.1 hypothetical protein VITISV_021035 [Vitis vinifera]
Length = 668
Score = 265 bits (677), Expect = 3e-81
Identities = 124/226 (54%), Positives = 168/226 (74%), Gaps = 4/226 (1%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
++M ++PYASA+GS+MY M+CTRPD+ A+ V SRYQSNPG +HW AVK+ILK+L RT++
Sbjct: 437 EKMRRVPYASAVGSLMYAMLCTRPDICFAVGVVSRYQSNPGLDHWVAVKHILKYLRRTRN 496
Query: 181 MFLVYGGSELKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTETE 360
LVY G EL +TD FQ+D++ KS S V TL GGA+ W+S KQ VADS E E
Sbjct: 497 YMLVYSGRELIPIGYTDSDFQSDRDSRKSTSEAVFTLGGGAIIWRSVKQTCVADSTMEAE 556
Query: 361 YI----AAKEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRRF 528
Y+ AAKEAVW+++F+ EL+VVPN+ P+ L+CDN AVA KE +H+K KH+ R+F
Sbjct: 557 YVAACEAAKEAVWLREFLKELEVVPNMHEPIRLYCDNSGAVANAKEPRNHRKGKHIERKF 616
Query: 529 HLIREIIERGDVTLERVDSQDNIADPFTKALTQQQFDRHLEKKGMR 666
HL+REI+ RGDV++E++ S +NIADPFTK L + F++HLE G+R
Sbjct: 617 HLVREIVSRGDVSVEKIASANNIADPFTKTLPARSFEQHLEGMGLR 662
>ABA97342.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1050
Score = 271 bits (693), Expect = 5e-81
Identities = 139/231 (60%), Positives = 174/231 (75%), Gaps = 5/231 (2%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
++MS IPYASAIGSIMY M+CT PDV++ALS TSRYQS+PGE HW AVKNILK+L RTKD
Sbjct: 821 NKMSVIPYASAIGSIMYAMLCTHPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKD 880
Query: 181 MFLVYGG-SELKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTET 357
MFLVYGG EL ++ +TD SFQTD++D +S S +V LNGGAVSWKSSKQ TV DS+TE
Sbjct: 881 MFLVYGGQEELVVKGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVVDSITEA 940
Query: 358 EYI----AAKEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRR 525
EYI AAKEAVW+KKF+++L V+ + P+ L+CDN A+AQ KE SHQKS ++L R
Sbjct: 941 EYIAASEAAKEAVWIKKFVSQLGVMTSASSPMDLYCDNSGAIAQAKEPRSHQKS-NILWR 999
Query: 526 FHLIREIIERGDVTLERVDSQDNIADPFTKALTQQQFDRHLEKKGMRYHGD 678
+HLIREI+ RG V + ++ + N+ADP TK L Q + H G+RY D
Sbjct: 1000 YHLIREIVGRGVVKICKIHTDFNVADPLTKPLPQPKHQAHTRAMGVRYIHD 1050
>OAO89438.1 hypothetical protein AXX17_ATUG00590 [Arabidopsis thaliana]
Length = 234
Score = 250 bits (638), Expect = 1e-80
Identities = 133/227 (58%), Positives = 159/227 (70%), Gaps = 4/227 (1%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
+RMS+IPYASAIGSIMY M+CTRPDVA ALS+TSRYQS+PGE HW A KNILK+L +TKD
Sbjct: 30 ERMSRIPYASAIGSIMYAMLCTRPDVACALSMTSRYQSDPGESHWTADKNILKYLRKTKD 89
Query: 181 MFLVYGGSELKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTETE 360
FLVYGG ND VS GAVSWKSSKQ T+ADS TE E
Sbjct: 90 KFLVYGG-----------------NDELVVS--------GAVSWKSSKQSTMADSTTEAE 124
Query: 361 YIAA----KEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRRF 528
YIAA KE VW++KFITEL VVP+I GPV ++CDN A+AQ KE SHQKSKH+LRR+
Sbjct: 125 YIAASKAAKEVVWIRKFITELGVVPSICGPVDIYCDNNGAIAQAKEPRSHQKSKHILRRY 184
Query: 529 HLIREIIERGDVTLERVDSQDNIADPFTKALTQQQFDRHLEKKGMRY 669
HLI +I++RGDV + RV + N+ADP TK L + + + H +RY
Sbjct: 185 HLICDIVDRGDVKISRVSTDANVADPLTKPLPRPKHESHTTVVCIRY 231
>KYP76577.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 368
Score = 254 bits (650), Expect = 1e-80
Identities = 126/184 (68%), Positives = 149/184 (80%), Gaps = 4/184 (2%)
Frame = +1
Query: 4 RMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKDM 183
RM+++PYASA+G+IMY M CTRPDVA A V SRYQ+NPGEE+WK VK ILK+L RT+D
Sbjct: 184 RMNRVPYASAVGAIMYIMTCTRPDVAFAPGVVSRYQANPGEENWKVVKTILKYLRRTQDQ 243
Query: 184 FLVYGGSELKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTETEY 363
FL+YGG+EL L+ +TD SF +D++DSKS+S YV TL GGAVSWKSSKQ TVADS TE EY
Sbjct: 244 FLIYGGTELMLKGYTDASFASDKDDSKSISGYVFTLYGGAVSWKSSKQATVADSTTEAEY 303
Query: 364 IAA----KEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRRFH 531
IAA KEAVWMKKFITEL VVP+I P+ L C+N A+AQ KE SHQKSKH+LRR+
Sbjct: 304 IAASDATKEAVWMKKFITELGVVPSIEEPISLLCNNNGAIAQAKEPRSHQKSKHILRRYQ 363
Query: 532 LIRE 543
LIRE
Sbjct: 364 LIRE 367
>AAP03364.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 657
Score = 261 bits (667), Expect = 6e-80
Identities = 131/206 (63%), Positives = 162/206 (78%), Gaps = 5/206 (2%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
++MS IPYASAIG IMY M+CTRPDV++ALS TSRYQ +PGE HW AVKNILK+L RTKD
Sbjct: 451 NKMSVIPYASAIGCIMYAMLCTRPDVSYALSATSRYQLDPGESHWIAVKNILKYLRRTKD 510
Query: 181 MFLVYGG-SELKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTET 357
MFLVYGG EL + +TD SFQTD++D +S S++V LNGGAVSWKSSKQ TVADS TE
Sbjct: 511 MFLVYGGQEELVVNGYTDASFQTDKDDFRSQSKFVFCLNGGAVSWKSSKQDTVADSTTEA 570
Query: 358 EYI----AAKEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRR 525
EYI AAK+AVW+KKF+++L V+ + P+ L CDN A+AQ KE SHQKSKH+L R
Sbjct: 571 EYIAASEAAKKAVWIKKFVSQLGVMTSASSPMDLCCDNSGAIAQAKEPRSHQKSKHILWR 630
Query: 526 FHLIREIIERGDVTLERVDSQDNIAD 603
+HLIREI+ RGDV + ++ + N+AD
Sbjct: 631 YHLIREIVGRGDVKICKIHTDLNVAD 656
>OAO97959.1 hypothetical protein AXX17_AT4G08610 [Arabidopsis thaliana]
Length = 568
Score = 258 bits (658), Expect = 2e-79
Identities = 131/214 (61%), Positives = 161/214 (75%), Gaps = 2/214 (0%)
Frame = +1
Query: 34 IGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKDMFLVYGGSE-L 210
+GSIMY M+CTRPDVA ALS+TSRYQS+PGE HW VKNILK+L RTKD FLVYGGSE L
Sbjct: 352 MGSIMYAMLCTRPDVACALSMTSRYQSDPGESHWIVVKNILKYLRRTKDKFLVYGGSEEL 411
Query: 211 KLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTETEYI-AAKEAVW 387
+ +TD SFQTD++D +S S +V LNGGA+SWKSSKQ TVADS TE AAKEAVW
Sbjct: 412 VVSGYTDASFQTDKDDFRSQSGFVFCLNGGALSWKSSKQSTVADSTTEAAASEAAKEAVW 471
Query: 388 MKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRRFHLIREIIERGDVT 567
++KFITELDVVP+I G + L+CDN A+AQ KE SHQK KH+ RR+HLIR+ I+RGDV
Sbjct: 472 IRKFITELDVVPSISGLIDLYCDNNGAIAQAKEPRSHQKFKHIQRRYHLIRDTIDRGDVK 531
Query: 568 LERVDSQDNIADPFTKALTQQQFDRHLEKKGMRY 669
+ R+ + N+ D TK L Q + + H +R+
Sbjct: 532 ISRLSADANVVDSLTKPLPQPKHNSHTVAIDIRF 565
>ABF96491.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 767
Score = 261 bits (667), Expect = 5e-79
Identities = 131/206 (63%), Positives = 162/206 (78%), Gaps = 5/206 (2%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
++MS IPYASAIG IMY M+CTRPDV++ALS TSRYQ +PGE HW AVKNILK+L RTKD
Sbjct: 561 NKMSVIPYASAIGCIMYAMLCTRPDVSYALSATSRYQLDPGESHWIAVKNILKYLRRTKD 620
Query: 181 MFLVYGG-SELKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTET 357
MFLVYGG EL + +TD SFQTD++D +S S++V LNGGAVSWKSSKQ TVADS TE
Sbjct: 621 MFLVYGGQEELVVNGYTDASFQTDKDDFRSQSKFVFCLNGGAVSWKSSKQDTVADSTTEA 680
Query: 358 EYI----AAKEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRR 525
EYI AAK+AVW+KKF+++L V+ + P+ L CDN A+AQ KE SHQKSKH+L R
Sbjct: 681 EYIAASEAAKKAVWIKKFVSQLGVMTSASSPMDLCCDNSGAIAQAKEPRSHQKSKHILWR 740
Query: 526 FHLIREIIERGDVTLERVDSQDNIAD 603
+HLIREI+ RGDV + ++ + N+AD
Sbjct: 741 YHLIREIVGRGDVKICKIHTDLNVAD 766
>AAP44605.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 266 bits (680), Expect = 8e-79
Identities = 135/212 (63%), Positives = 166/212 (78%), Gaps = 5/212 (2%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
++MS IPYASAIGSIMY M+CTR DV++ALS TSRYQS+ GE HW AVKNILK+L RTKD
Sbjct: 949 NKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTKD 1008
Query: 181 MFLVYGGSE-LKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTET 357
MFLVYG E L + +TD SFQTD++D +S S +V LNGGAVSWKSSKQ TVADS TE
Sbjct: 1009 MFLVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEA 1068
Query: 358 EYIAA----KEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRR 525
EYIAA KEAVW+KKF+++L V+ + P+ L+CDN A+AQ KE SHQKSKH+LRR
Sbjct: 1069 EYIAASEAAKEAVWIKKFVSQLGVMTSASSPMDLYCDNSGAIAQAKEPRSHQKSKHILRR 1128
Query: 526 FHLIREIIERGDVTLERVDSQDNIADPFTKAL 621
+HLIRE++ RGDV + ++ + N+ADP TK L
Sbjct: 1129 YHLIREMVGRGDVKICKIHTDLNVADPLTKPL 1160
>ABF97047.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 266 bits (680), Expect = 1e-78
Identities = 135/212 (63%), Positives = 166/212 (78%), Gaps = 5/212 (2%)
Frame = +1
Query: 1 DRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKD 180
++MS IPYASAIGSIMY M+CTR DV++ALS TSRYQS+ GE HW AVKNILK+L RTKD
Sbjct: 1036 NKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTKD 1095
Query: 181 MFLVYGGSE-LKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTET 357
MFLVYG E L + +TD SFQTD++D +S S +V LNGGAVSWKSSKQ TVADS TE
Sbjct: 1096 MFLVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEA 1155
Query: 358 EYIAA----KEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRR 525
EYIAA KEAVW+KKF+++L V+ + P+ L+CDN A+AQ KE SHQKSKH+LRR
Sbjct: 1156 EYIAASEAAKEAVWIKKFVSQLGVMTSASSPMDLYCDNSGAIAQAKEPRSHQKSKHILRR 1215
Query: 526 FHLIREIIERGDVTLERVDSQDNIADPFTKAL 621
+HLIRE++ RGDV + ++ + N+ADP TK L
Sbjct: 1216 YHLIREMVGRGDVKICKIHTDLNVADPLTKPL 1247
>EXX50149.1 gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
Length = 1303
Score = 262 bits (670), Expect = 4e-77
Identities = 132/225 (58%), Positives = 169/225 (75%), Gaps = 5/225 (2%)
Frame = +1
Query: 7 MSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNPGEEHWKAVKNILKFL*RTKDMF 186
MS++PYASA+GSIMY M CTRPDVA ALS+ SRYQ NPG HW AVKNILK+L RTK+M
Sbjct: 1072 MSRVPYASAVGSIMYAMTCTRPDVAFALSMVSRYQGNPGRAHWIAVKNILKYLRRTKNMV 1131
Query: 187 LVYGGSE-LKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWKSSKQQTVADSVTETEY 363
LV GGS+ L++E +TD SFQTD++ +S S +V LNGGAV+WKSSKQ+TVADS E+EY
Sbjct: 1132 LVLGGSDTLRVEGYTDASFQTDRDSGRSQSGWVFLLNGGAVTWKSSKQETVADSTCESEY 1191
Query: 364 IAA----KEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVKESMSHQKSKHVLRRFH 531
IAA KEA W+K FI +L VVP+I+ P+ LFCDN AVA KE H KS+H+ R++H
Sbjct: 1192 IAASEASKEAAWLKNFIGDLGVVPSIQEPLELFCDNEGAVALTKEPRDHGKSRHIDRKYH 1251
Query: 532 LIREIIERGDVTLERVDSQDNIADPFTKALTQQQFDRHLEKKGMR 666
IR +E G + ++RV S+DN ADP TKAL++ + ++H G+R
Sbjct: 1252 YIRHRVEEGHLLVKRVSSEDNPADPLTKALSRIKHNQHARSIGLR 1296
>KYP68473.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 187
Score = 238 bits (608), Expect = 1e-76
Identities = 121/185 (65%), Positives = 144/185 (77%), Gaps = 4/185 (2%)
Frame = +1
Query: 136 KAVKNILKFL*RTKDMFLVYGGSELKLESFTDLSFQTDQNDSKSVSRYVLTLNGGAVSWK 315
K VK LK+L RT+D FL+YGG+EL L+ +TD SF +D++DSKS+S YV TL GGAVSWK
Sbjct: 1 KVVKTFLKYLRRTQDQFLIYGGTELMLKGYTDESFASDKDDSKSISGYVFTLYGGAVSWK 60
Query: 316 SSKQQTVADSVTETEYIAA----KEAVWMKKFITELDVVPNIRGPVPLFCDNIRAVAQVK 483
SSKQ TVADS TE EYIAA KEAVWMKKFITEL VVP+I P+ L CDN A+AQ K
Sbjct: 61 SSKQATVADSTTEAEYIAASDAAKEAVWMKKFITELGVVPSIEEPISLLCDNNGAIAQAK 120
Query: 484 ESMSHQKSKHVLRRFHLIREIIERGDVTLERVDSQDNIADPFTKALTQQQFDRHLEKKGM 663
E SHQKSKH+LRR+HLIREIIERGDV + +VD + N ADPFTKAL ++FD+H + GM
Sbjct: 121 EPRSHQKSKHILRRYHLIREIIERGDVKILKVDGKKNAADPFTKALGIKEFDKHKWEVGM 180
Query: 664 RYHGD 678
+Y D
Sbjct: 181 KYMTD 185