BLASTX nr result

ID: Panax24_contig00035445 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax24_contig00035445
         (509 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_002322815.1 hypothetical protein POPTR_0016s07700g [Populus t...    59   8e-09
XP_002310048.1 hypothetical protein POPTR_0007s07030g [Populus t...    53   1e-06
AFK44928.1 unknown [Medicago truncatula]                               52   4e-06

>XP_002322815.1 hypothetical protein POPTR_0016s07700g [Populus trichocarpa]
           EEF04576.1 hypothetical protein POPTR_0016s07700g
           [Populus trichocarpa]
          Length = 63

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 28/42 (66%), Positives = 31/42 (73%)
 Frame = +2

Query: 356 LFLRNIRSGRLRSFAFARLERLCCFILPWMSEILFFYFYFAL 481
           L  +NIRSGRLR+FAFA LE LCCFILPWMSE      +F L
Sbjct: 19  LVSQNIRSGRLRAFAFAGLESLCCFILPWMSETSILNEFFGL 60


>XP_002310048.1 hypothetical protein POPTR_0007s07030g [Populus trichocarpa]
           EEE90498.1 hypothetical protein POPTR_0007s07030g
           [Populus trichocarpa]
          Length = 64

 Score = 53.1 bits (126), Expect = 1e-06
 Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
 Frame = +2

Query: 332 VDDDKF*GLFLRNIRSGRLRSFAF-ARLERLCCFILPWMSEILFFYFYFA 478
           V+DD+  GLFL+NIRSGRLR+FAF  RLE  CC I P +  ++ F  YFA
Sbjct: 8   VNDDRSKGLFLKNIRSGRLRAFAFRPRLESFCC-IFPSLDSLIQFCDYFA 56


>AFK44928.1 unknown [Medicago truncatula]
          Length = 57

 Score = 51.6 bits (122), Expect = 4e-06
 Identities = 25/29 (86%), Positives = 26/29 (89%)
 Frame = -3

Query: 453 ISDIQGRIKQHNLSSLAKAKDLRRPLRMF 367
           + DIQGRIKQH LSSLAKAK LRRPLRMF
Sbjct: 29  VPDIQGRIKQHKLSSLAKAKVLRRPLRMF 57


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