BLASTX nr result
ID: Panax24_contig00033289
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00033289
(815 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_019107672.1 PREDICTED: uncharacterized protein LOC109136237 [... 44 8e-09
ONM30467.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 43 3e-08
EMS56299.1 Polycomb group protein EMBRYONIC FLOWER 2 [Triticum u... 49 2e-07
AQK50312.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 49 2e-07
ONM53611.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 48 4e-07
EMS50104.1 Retrovirus-related Pol polyprotein LINE-1 [Triticum u... 50 6e-07
AQK70926.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 44 6e-07
ONL92524.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 46 1e-06
ONM32720.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 45 1e-06
AEJ72569.1 putative reverse transcriptase family member [Malus d... 41 1e-06
ONM55524.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 45 2e-06
AQL03708.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 47 2e-06
AQK84025.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 47 2e-06
CCH50976.1 T4.15 [Malus x robusta] 40 2e-06
>XP_019107672.1 PREDICTED: uncharacterized protein LOC109136237 [Beta vulgaris
subsp. vulgaris]
Length = 326
Score = 44.3 bits (103), Expect(3) = 8e-09
Identities = 28/76 (36%), Positives = 43/76 (56%)
Frame = +2
Query: 338 R*KNEDIRNRVGEASIEEKMREHRLRLFGYILVSNVSLLILHSVK*KDESHIK*DIGRDR 517
R +NE I +VG ASIEEKMRE+RLR FG++ + + + + +K R
Sbjct: 231 RLRNEVIWEKVGVASIEEKMRENRLRWFGHVTRRSGDAPVRRIEEWRSNQIVK-----GR 285
Query: 518 GKTKITLEKVGKVDMK 565
G+ K+T +V + DM+
Sbjct: 286 GRPKMTWLRVNESDMR 301
Score = 38.9 bits (89), Expect(3) = 8e-09
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 QVEGKVYRTMIRTAVT*S*ILNDQKQ-HVHKMRGTGLRMLKWICSDTLTRLDKIK 345
+++GK YRT IR A+ KQ HVHKM +RML+W+C TR D+++
Sbjct: 181 RLKGKFYRTAIRPALLYGTECWAVKQCHVHKMNVAEMRMLRWMCGH--TRKDRLR 233
Score = 24.6 bits (52), Expect(3) = 8e-09
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 582 EDMTYDRSEWRNAIRVSD 635
E MT DRS WR +I V +
Sbjct: 307 ESMTLDRSGWRGSIYVEE 324
>ONM30467.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 488
Score = 42.7 bits (99), Expect(3) = 3e-08
Identities = 25/76 (32%), Positives = 43/76 (56%)
Frame = +2
Query: 338 R*KNEDIRNRVGEASIEEKMREHRLRLFGYILVSNVSLLILHSVK*KDESHIK*DIGRDR 517
R +N+DI++R+G A IEEK+ +HRLR FG++ + + +D ++ R R
Sbjct: 394 RVRNDDIQDRLGVAPIEEKLIQHRLRWFGHVHRRPPEAPVHRGIIGRDN-----NVKRGR 448
Query: 518 GKTKITLEKVGKVDMK 565
G+ + EK K ++K
Sbjct: 449 GRPNLIWEKAIKRNLK 464
Score = 40.4 bits (93), Expect(3) = 3e-08
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +1
Query: 175 NSSQVEGKVYRTMIRTAVT*-S*ILNDQKQHVHKMRGTGLRMLKWICSDTLTRLDKIK 345
++++VEGK YRT IR A+ + +++H+ ++ +RML+WIC TRLD+++
Sbjct: 341 SATEVEGKFYRTAIRHAMLYGAECWPTKRRHIQQLSVAEIRMLRWICGH--TRLDRVR 396
Score = 22.7 bits (47), Expect(3) = 3e-08
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 564 KELQVIEDMTYDRSEWRNAIRVSD 635
KE + ++ DRS W+ AI V +
Sbjct: 464 KEWNIPMELCLDRSVWKEAIHVPE 487
>EMS56299.1 Polycomb group protein EMBRYONIC FLOWER 2 [Triticum urartu]
Length = 974
Score = 49.3 bits (116), Expect(2) = 2e-07
Identities = 31/74 (41%), Positives = 45/74 (60%)
Frame = +2
Query: 344 KNEDIRNRVGEASIEEKMREHRLRLFGYILVSNVSLLILHSVK*KDESHIK*DIGRDRGK 523
+N+DIR+RVG A IEEK+ +HRLR FG+I +HS + K ++K R RG+
Sbjct: 295 RNDDIRDRVGVAPIEEKLVQHRLRWFGHIQRMPPE-APMHSGRLKHAENVK----RGRGR 349
Query: 524 TKITLEKVGKVDMK 565
+T E+ K D+K
Sbjct: 350 PNLTREESIKRDLK 363
Score = 34.3 bits (77), Expect(2) = 2e-07
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 QVEGKVYRTMIRTAVT*-S*ILNDQKQHVHKMRGTGLRMLKWICSDTLTRLDKIK 345
+++GK YRT +R A+ + +++HV ++ T +RML+W+C TR D+++
Sbjct: 243 KLKGKFYRTAVRPAMLYGAECWPTKRRHVQQLGMTEMRMLRWMCGH--TRKDQVR 295
>AQK50312.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 561
Score = 48.9 bits (115), Expect(2) = 2e-07
Identities = 29/76 (38%), Positives = 44/76 (57%)
Frame = +2
Query: 338 R*KNEDIRNRVGEASIEEKMREHRLRLFGYILVSNVSLLILHSVK*KDESHIK*DIGRDR 517
R +N+DIR RVG A IEEK+ +HRLR FG+I + L+ + + E ++ R R
Sbjct: 467 RVRNDDIRERVGVAPIEEKLMQHRLRWFGHIQRRSEEALVHIGIIRRPE-----NVKRGR 521
Query: 518 GKTKITLEKVGKVDMK 565
G+ +T + K D+K
Sbjct: 522 GRPTLTWTEAVKRDLK 537
Score = 34.7 bits (78), Expect(2) = 2e-07
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 QVEGKVYRTMIRTAVT*-S*ILNDQKQHVHKMRGTGLRMLKWICSDTLTRLDKIK 345
+++GK YRT IR+A+ + +++HV ++ +RML+WIC TR D+++
Sbjct: 417 KLKGKFYRTAIRSAMLYGAECWPTKRRHVQQLCVAEMRMLRWICGH--TRRDRVR 469
>ONM53611.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 496
Score = 48.1 bits (113), Expect(2) = 4e-07
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = +2
Query: 338 R*KNEDIRNRVGEASIEEKMREHRLRLFGYILVSNVSLLILHSVK*KDESHIK*DIGRDR 517
R +N+DIR RVG ASIEEK+ +HRLR FG+I L+ + + E ++ R R
Sbjct: 402 RVRNDDIRERVGAASIEEKLMQHRLRWFGHIQRRPEEALVHIGIIRRPE-----NVKRGR 456
Query: 518 GKTKITLEKVGKVDMK 565
G+ + + K D+K
Sbjct: 457 GRPTLMWTEAVKKDLK 472
Score = 34.7 bits (78), Expect(2) = 4e-07
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 QVEGKVYRTMIRTAVT*-S*ILNDQKQHVHKMRGTGLRMLKWICSDTLTRLDKIK 345
+++GK YRT IR A+ + +++HV ++ +RML+WIC TR D+++
Sbjct: 352 KLKGKFYRTTIRPAMLYGAECWPTKRRHVQQLSVAEMRMLRWICGH--TRRDRVR 404
>EMS50104.1 Retrovirus-related Pol polyprotein LINE-1 [Triticum urartu]
Length = 3154
Score = 50.1 bits (118), Expect(2) = 6e-07
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = +2
Query: 338 R*KNEDIRNRVGEASIEEKMREHRLRLFGYILVSNVSLLILHSVK*KDESHIK*DIGRDR 517
R +N+DIR+RVG A IEEK+ +HRLR FG+I + HS + K ++K R R
Sbjct: 2387 RVRNDDIRDRVGVAPIEEKLVQHRLRWFGHIQRRPPEAPV-HSGRLKRAENVK----RGR 2441
Query: 518 GKTKITLEKVGKVDMK 565
G+ +T E+ K D+K
Sbjct: 2442 GRPNLTWEESVKRDLK 2457
Score = 32.0 bits (71), Expect(2) = 6e-07
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 QVEGKVYRTMIRTAVT*S*-ILNDQKQHVHKMRGTGLRMLKWICSDTLTRLDKIK 345
++ GK YRT +R A+ +++HV ++ +RML+W+C TR D+++
Sbjct: 2337 KLNGKFYRTAVRPAMLYGVECWPTKRRHVQQLGVAEMRMLRWMCGH--TRKDRVR 2389
>AQK70926.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 790
Score = 43.9 bits (102), Expect(2) = 6e-07
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +2
Query: 338 R*KNEDIRNRVGEASIEEKMREHRLRLFGYI 430
R +N+DIR RVG A IEEK+ +HRLR FG+I
Sbjct: 696 RVRNDDIRERVGVAPIEEKLMQHRLRWFGHI 726
Score = 38.1 bits (87), Expect(2) = 6e-07
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 QVEGKVYRTMIRTAVT*-S*ILNDQKQHVHKMRGTGLRMLKWICSDTLTRLDKIK 345
+++GK YRT IR A+ + ++QHV ++ T +RML+WIC TR D+++
Sbjct: 646 KLKGKFYRTAIRPAMLYGAECWPTKRQHVQQLSVTEMRMLRWICGH--TRRDRVR 698
>ONL92524.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 46.2 bits (108), Expect(2) = 1e-06
Identities = 28/76 (36%), Positives = 43/76 (56%)
Frame = +2
Query: 338 R*KNEDIRNRVGEASIEEKMREHRLRLFGYILVSNVSLLILHSVK*KDESHIK*DIGRDR 517
R +N+DIR RVG A IEEK+ +HRLR FG+I + + + + E ++ R R
Sbjct: 922 RVRNDDIRERVGVAPIEEKLMQHRLRWFGHIQRRSEEAPVHIGIIRRPE-----NVKRGR 976
Query: 518 GKTKITLEKVGKVDMK 565
G+ +T + K D+K
Sbjct: 977 GRPTLTWTEAVKRDLK 992
Score = 34.7 bits (78), Expect(2) = 1e-06
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 QVEGKVYRTMIRTAVT*-S*ILNDQKQHVHKMRGTGLRMLKWICSDTLTRLDKIK 345
+++GK YRT IR A+ + +++HV ++ +RML+WIC TR D+++
Sbjct: 872 KIKGKFYRTAIRPAMLYGAECWPTKRRHVQQLCVAEMRMLRWICGH--TRRDRVR 924
>ONM32720.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 45.1 bits (105), Expect(2) = 1e-06
Identities = 28/76 (36%), Positives = 42/76 (55%)
Frame = +2
Query: 338 R*KNEDIRNRVGEASIEEKMREHRLRLFGYILVSNVSLLILHSVK*KDESHIK*DIGRDR 517
R +N+DIR RVG A IEEK+ +HRLR FG+I + + + E ++ R R
Sbjct: 922 RVRNDDIRERVGVAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE-----NVKRGR 976
Query: 518 GKTKITLEKVGKVDMK 565
G+ +T + K D+K
Sbjct: 977 GRPTLTWTEAVKRDLK 992
Score = 35.8 bits (81), Expect(2) = 1e-06
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 QVEGKVYRTMIRTAVT*-S*ILNDQKQHVHKMRGTGLRMLKWICSDTLTRLDKIK 345
+++GK YRT IR A+ + +++HV ++ T +RML+WIC TR D+++
Sbjct: 872 KLKGKFYRTAIRPAMLYGAECWPTKRRHVQQLCVTEMRMLRWICGH--TRRDRVR 924
>AEJ72569.1 putative reverse transcriptase family member [Malus domestica]
Length = 212
Score = 40.8 bits (94), Expect(2) = 1e-06
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +2
Query: 344 KNEDIRNRVGEASIEEKMREHRLRLFGYI 430
+NEDIR +VG A IE MRE+RLR FG++
Sbjct: 118 RNEDIRGKVGVAEIEGNMRENRLRWFGHV 146
Score = 40.0 bits (92), Expect(2) = 1e-06
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 QVEGKVYRTMIRTAVT*S*ILNDQK-QHVHKMRGTGLRMLKWICSDTLTRLDKIK 345
+++GK YRT IR A+ K QHVHKM +RML+W+C TR DKI+
Sbjct: 66 KLKGKFYRTTIRPAMLYGTECWAVKYQHVHKMGVAEMRMLRWMCGH--TRKDKIR 118
>ONM55524.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1038
Score = 45.1 bits (105), Expect(2) = 2e-06
Identities = 28/76 (36%), Positives = 42/76 (55%)
Frame = +2
Query: 338 R*KNEDIRNRVGEASIEEKMREHRLRLFGYILVSNVSLLILHSVK*KDESHIK*DIGRDR 517
R +N+DIR RVG A IEEK+ +HRLR FG+I + + + E ++ R R
Sbjct: 944 RVRNDDIRERVGVAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE-----NVKRGR 998
Query: 518 GKTKITLEKVGKVDMK 565
G+ +T + K D+K
Sbjct: 999 GRPTLTWTEAVKRDLK 1014
Score = 35.4 bits (80), Expect(2) = 2e-06
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 QVEGKVYRTMIRTAVT*-S*ILNDQKQHVHKMRGTGLRMLKWICSDTLTRLDKIK 345
+++GK YRT IR A+ + +++HV ++ +RML+WIC TR D+++
Sbjct: 894 KLKGKFYRTAIRPAILYGAECWPTKRRHVQQLSVAEMRMLRWICGH--TRRDRVR 946
>AQL03708.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 46.6 bits (109), Expect(2) = 2e-06
Identities = 28/76 (36%), Positives = 43/76 (56%)
Frame = +2
Query: 338 R*KNEDIRNRVGEASIEEKMREHRLRLFGYILVSNVSLLILHSVK*KDESHIK*DIGRDR 517
R +N+DIR RVG A IEEK+ +HRLR FG+I + + + + E ++ R R
Sbjct: 922 RVRNDDIRERVGVAPIEEKLMQHRLRWFGHIQRRSEEAPVHIGIIRRPE-----NVKRGR 976
Query: 518 GKTKITLEKVGKVDMK 565
G+ +T + K D+K
Sbjct: 977 GRPTLTWSEAVKRDLK 992
Score = 33.9 bits (76), Expect(2) = 2e-06
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 QVEGKVYRTMIRTAVT*-S*ILNDQKQHVHKMRGTGLRMLKWICSDTLTRLDKIK 345
+++GK YRT IR A+ + +++HV ++ +RML+WIC TR D+++
Sbjct: 872 KLKGKFYRTAIRPAMLYGAECWPTKRRHVQQLCVAEMRMLRWICGH--TRRDRVR 924
>AQK84025.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 46.6 bits (109), Expect(2) = 2e-06
Identities = 28/76 (36%), Positives = 43/76 (56%)
Frame = +2
Query: 338 R*KNEDIRNRVGEASIEEKMREHRLRLFGYILVSNVSLLILHSVK*KDESHIK*DIGRDR 517
R +N+DIR RVG A IEEK+ +HRLR FG+I + + + + E ++ R R
Sbjct: 922 RVRNDDIRERVGVAPIEEKLMQHRLRWFGHIQQRSEEAPVHIGIIRRPE-----NVKRGR 976
Query: 518 GKTKITLEKVGKVDMK 565
G+ +T + K D+K
Sbjct: 977 GRPTLTWTEAVKRDLK 992
Score = 33.9 bits (76), Expect(2) = 2e-06
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 QVEGKVYRTMIRTAVT*-S*ILNDQKQHVHKMRGTGLRMLKWICSDTLTRLDKIK 345
+++GK YRT IR A+ + +++HV ++ +RML+WIC TR D+++
Sbjct: 872 KLKGKFYRTTIRPAMLYGAECWPTKRRHVQQLCVAEMRMLRWICGH--TRRDRVR 924
>CCH50976.1 T4.15 [Malus x robusta]
Length = 986
Score = 40.0 bits (92), Expect(2) = 2e-06
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 QVEGKVYRTMIRTAVT*S*ILNDQK-QHVHKMRGTGLRMLKWICSDTLTRLDKIK 345
+++GK YRT IR A+ K QHVHKM +RML+W+C TR DKI+
Sbjct: 840 KLKGKFYRTAIRPAMLYGTECWAVKHQHVHKMGVAEMRMLRWMCGH--TRKDKIR 892
Score = 40.0 bits (92), Expect(2) = 2e-06
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +2
Query: 344 KNEDIRNRVGEASIEEKMREHRLRLFGYI 430
+NEDIR +VG A I+ KMRE++LR FG++
Sbjct: 892 RNEDIRGKVGVAEIQGKMRENQLRWFGHV 920