BLASTX nr result
ID: Panax24_contig00032741
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00032741
(386 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_017236138.1 PREDICTED: polyadenylation and cleavage factor ho... 137 4e-35
XP_017236137.1 PREDICTED: polyadenylation and cleavage factor ho... 137 4e-35
XP_010275998.1 PREDICTED: polyadenylation and cleavage factor ho... 121 1e-29
CBI23183.3 unnamed protein product, partial [Vitis vinifera] 115 2e-27
XP_019078215.1 PREDICTED: polyadenylation and cleavage factor ho... 113 1e-26
XP_010655357.1 PREDICTED: polyadenylation and cleavage factor ho... 113 1e-26
XP_010267732.1 PREDICTED: polyadenylation and cleavage factor ho... 110 9e-26
XP_010267731.1 PREDICTED: polyadenylation and cleavage factor ho... 110 9e-26
KVH97396.1 CID domain-containing protein, partial [Cynara cardun... 108 4e-25
XP_008224793.1 PREDICTED: LOW QUALITY PROTEIN: polyadenylation a... 107 1e-24
XP_011459964.1 PREDICTED: polyadenylation and cleavage factor ho... 107 2e-24
ONI10047.1 hypothetical protein PRUPE_4G024700 [Prunus persica] 105 5e-24
XP_007213705.1 hypothetical protein PRUPE_ppa000684mg [Prunus pe... 105 5e-24
GAV85191.1 CTD_bind domain-containing protein [Cephalotus follic... 105 7e-24
KVH97398.1 CID domain-containing protein [Cynara cardunculus var... 105 9e-24
OAY24701.1 hypothetical protein MANES_17G036600 [Manihot esculenta] 104 2e-23
XP_009340950.1 PREDICTED: polyadenylation and cleavage factor ho... 103 2e-23
XP_008384033.1 PREDICTED: polyadenylation and cleavage factor ho... 103 2e-23
XP_009340949.1 PREDICTED: polyadenylation and cleavage factor ho... 103 2e-23
XP_018499458.1 PREDICTED: polyadenylation and cleavage factor ho... 103 2e-23
>XP_017236138.1 PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2
[Daucus carota subsp. sativus]
Length = 922
Score = 137 bits (345), Expect = 4e-35
Identities = 70/106 (66%), Positives = 84/106 (79%), Gaps = 9/106 (8%)
Frame = -3
Query: 291 MDQLRFLSP-----RNLGFNNKPMPNDFLVQKPMTPIIDRFKAMLKDREDEIRALA---- 139
MDQLR++S RNLG KPM ND+L+QKPMTPIIDRFKAML+ RE+ I+AL
Sbjct: 1 MDQLRYISSSTENSRNLGLAKKPMANDYLIQKPMTPIIDRFKAMLRGREENIKALGLHGG 60
Query: 138 QNDDDDVPPPSTDEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
++DDD + PP +EIV+LYE++LSELT NSKPIITDLTIIAGEQRE
Sbjct: 61 EDDDDPISPPRCEEIVKLYEIVLSELTFNSKPIITDLTIIAGEQRE 106
>XP_017236137.1 PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
[Daucus carota subsp. sativus] KZN07292.1 hypothetical
protein DCAR_008129 [Daucus carota subsp. sativus]
Length = 986
Score = 137 bits (345), Expect = 4e-35
Identities = 70/106 (66%), Positives = 84/106 (79%), Gaps = 9/106 (8%)
Frame = -3
Query: 291 MDQLRFLSP-----RNLGFNNKPMPNDFLVQKPMTPIIDRFKAMLKDREDEIRALA---- 139
MDQLR++S RNLG KPM ND+L+QKPMTPIIDRFKAML+ RE+ I+AL
Sbjct: 1 MDQLRYISSSTENSRNLGLAKKPMANDYLIQKPMTPIIDRFKAMLRGREENIKALGLHGG 60
Query: 138 QNDDDDVPPPSTDEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
++DDD + PP +EIV+LYE++LSELT NSKPIITDLTIIAGEQRE
Sbjct: 61 EDDDDPISPPRCEEIVKLYEIVLSELTFNSKPIITDLTIIAGEQRE 106
>XP_010275998.1 PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
[Nelumbo nucifera]
Length = 1071
Score = 121 bits (304), Expect = 1e-29
Identities = 67/115 (58%), Positives = 86/115 (74%), Gaps = 18/115 (15%)
Frame = -3
Query: 291 MDQLRFLS----PRNLGF--------------NNKPMPNDFLVQKPMTPIIDRFKAMLKD 166
M++ RF+S PRNLGF ++K +PND L QKP PI+++F+A+LK+
Sbjct: 1 MEEERFVSARESPRNLGFLSERGSSTSGGSINSSKAVPND-LAQKPPPPILEKFRALLKE 59
Query: 165 REDEIRALAQNDDDDVPPPSTDEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
RE+E+R +DDDDVPPPST+EIVRLYE++LSELT NSKPIIT+LTIIAGEQRE
Sbjct: 60 REEEMRV---SDDDDVPPPSTEEIVRLYEVVLSELTFNSKPIITELTIIAGEQRE 111
>CBI23183.3 unnamed protein product, partial [Vitis vinifera]
Length = 1003
Score = 115 bits (289), Expect = 2e-27
Identities = 65/119 (54%), Positives = 82/119 (68%), Gaps = 17/119 (14%)
Frame = -3
Query: 306 VLKTSMDQLRFL-----SPRNLGF------------NNKPMPNDFLVQKPMTPIIDRFKA 178
+L +MD RF+ +PR LGF KPM N+ + QKP+ PI+DRFKA
Sbjct: 36 ILNPAMDGDRFVVSARENPRTLGFAPERGPGGSATATAKPMSNE-ISQKPLVPIVDRFKA 94
Query: 177 MLKDREDEIRALAQNDDDDVPPPSTDEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
+LK REDE+R L+ DDVPPP+T+EIVRLYE++LSEL NSKPIITDLTIIAG+ +E
Sbjct: 95 LLKQREDELRVLS---GDDVPPPTTEEIVRLYEIVLSELIFNSKPIITDLTIIAGDHKE 150
>XP_019078215.1 PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2
[Vitis vinifera]
Length = 1033
Score = 113 bits (282), Expect = 1e-26
Identities = 64/114 (56%), Positives = 79/114 (69%), Gaps = 17/114 (14%)
Frame = -3
Query: 291 MDQLRFL-----SPRNLGF------------NNKPMPNDFLVQKPMTPIIDRFKAMLKDR 163
MD RF+ +PR LGF KPM N+ + QKP+ PI+DRFKA+LK R
Sbjct: 1 MDGDRFVVSARENPRTLGFAPERGPGGSATATAKPMSNE-ISQKPLVPIVDRFKALLKQR 59
Query: 162 EDEIRALAQNDDDDVPPPSTDEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
EDE+R L+ DDVPPP+T+EIVRLYE++LSEL NSKPIITDLTIIAG+ +E
Sbjct: 60 EDELRVLS---GDDVPPPTTEEIVRLYEIVLSELIFNSKPIITDLTIIAGDHKE 110
>XP_010655357.1 PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
[Vitis vinifera]
Length = 1046
Score = 113 bits (282), Expect = 1e-26
Identities = 64/114 (56%), Positives = 79/114 (69%), Gaps = 17/114 (14%)
Frame = -3
Query: 291 MDQLRFL-----SPRNLGF------------NNKPMPNDFLVQKPMTPIIDRFKAMLKDR 163
MD RF+ +PR LGF KPM N+ + QKP+ PI+DRFKA+LK R
Sbjct: 1 MDGDRFVVSARENPRTLGFAPERGPGGSATATAKPMSNE-ISQKPLVPIVDRFKALLKQR 59
Query: 162 EDEIRALAQNDDDDVPPPSTDEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
EDE+R L+ DDVPPP+T+EIVRLYE++LSEL NSKPIITDLTIIAG+ +E
Sbjct: 60 EDELRVLS---GDDVPPPTTEEIVRLYEIVLSELIFNSKPIITDLTIIAGDHKE 110
>XP_010267732.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like
isoform X2 [Nelumbo nucifera]
Length = 1049
Score = 110 bits (276), Expect = 9e-26
Identities = 64/116 (55%), Positives = 82/116 (70%), Gaps = 19/116 (16%)
Frame = -3
Query: 291 MDQLRFLS----PRNLGF---------------NNKPMPNDFLVQKPMTPIIDRFKAMLK 169
M++ RF S PRNLGF N K +PND LVQKP PI++RF+++LK
Sbjct: 1 MEEERFFSSRENPRNLGFLSERGASNSGSSSNNNCKAVPND-LVQKPPPPILERFRSLLK 59
Query: 168 DREDEIRALAQNDDDDVPPPSTDEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
+RE+E+R ++D+DV PST+E VRLYE++LSELT NSKPIIT+LTIIAGEQRE
Sbjct: 60 EREEEMRV---SEDNDVRAPSTEETVRLYEVVLSELTFNSKPIITELTIIAGEQRE 112
>XP_010267731.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like
isoform X1 [Nelumbo nucifera]
Length = 1058
Score = 110 bits (276), Expect = 9e-26
Identities = 64/116 (55%), Positives = 82/116 (70%), Gaps = 19/116 (16%)
Frame = -3
Query: 291 MDQLRFLS----PRNLGF---------------NNKPMPNDFLVQKPMTPIIDRFKAMLK 169
M++ RF S PRNLGF N K +PND LVQKP PI++RF+++LK
Sbjct: 1 MEEERFFSSRENPRNLGFLSERGASNSGSSSNNNCKAVPND-LVQKPPPPILERFRSLLK 59
Query: 168 DREDEIRALAQNDDDDVPPPSTDEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
+RE+E+R ++D+DV PST+E VRLYE++LSELT NSKPIIT+LTIIAGEQRE
Sbjct: 60 EREEEMRV---SEDNDVRAPSTEETVRLYEVVLSELTFNSKPIITELTIIAGEQRE 112
>KVH97396.1 CID domain-containing protein, partial [Cynara cardunculus var.
scolymus]
Length = 1024
Score = 108 bits (271), Expect = 4e-25
Identities = 57/107 (53%), Positives = 81/107 (75%), Gaps = 8/107 (7%)
Frame = -3
Query: 297 TSMDQLRFLSPRNLGFNNKPMPNDFLV-------QKPMTPIIDRFKAMLKDREDEIRALA 139
T M+ FL+ R++GF +P ND ++ QK +TPI DRFK +LK+RE++IR +
Sbjct: 59 TPMEGTSFLTSRSIGF--RPSHNDSVLPLANNCNQKSLTPICDRFKGLLKEREEDIRVSS 116
Query: 138 -QNDDDDVPPPSTDEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
++D+ ++P PS++EIV LYE++LSELT+NSKP+ITDLTIIAGEQRE
Sbjct: 117 GRHDEIEIPSPSSEEIVELYEIVLSELTINSKPLITDLTIIAGEQRE 163
>XP_008224793.1 PREDICTED: LOW QUALITY PROTEIN: polyadenylation and cleavage factor
homolog 4 [Prunus mume]
Length = 1002
Score = 107 bits (268), Expect = 1e-24
Identities = 54/95 (56%), Positives = 72/95 (75%), Gaps = 2/95 (2%)
Frame = -3
Query: 279 RFLSPRNLGFNNKPMPNDFLVQKPM--TPIIDRFKAMLKDREDEIRALAQNDDDDVPPPS 106
R ++ + K MPN+ L QKP TPI+DRF+A+LK R+D++R + +DDV PPS
Sbjct: 22 RLIAASSAATGTKAMPNNELAQKPQPPTPIVDRFRALLKQRDDDLRV---SPEDDVSPPS 78
Query: 105 TDEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
T+EIV+LYE++L+EL NSKPIITDLTIIAGEQR+
Sbjct: 79 TEEIVQLYEMVLAELIFNSKPIITDLTIIAGEQRD 113
>XP_011459964.1 PREDICTED: polyadenylation and cleavage factor homolog 4 [Fragaria
vesca subsp. vesca]
Length = 948
Score = 107 bits (266), Expect = 2e-24
Identities = 58/94 (61%), Positives = 71/94 (75%), Gaps = 4/94 (4%)
Frame = -3
Query: 270 SPRNLGFN-NKPMPNDFLVQKPM---TPIIDRFKAMLKDREDEIRALAQNDDDDVPPPST 103
+PR L F KPMP L KP TPI+DR+KA+LK R+D++R + DDDV PPST
Sbjct: 7 NPRPLAFPATKPMPITDLAPKPPPPPTPIVDRYKALLKQRDDDLRV---SPDDDVSPPST 63
Query: 102 DEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
+EIV+LYE++LSEL NSKPIITDLTIIAGEQR+
Sbjct: 64 EEIVQLYEMLLSELVFNSKPIITDLTIIAGEQRD 97
>ONI10047.1 hypothetical protein PRUPE_4G024700 [Prunus persica]
Length = 1017
Score = 105 bits (263), Expect = 5e-24
Identities = 53/95 (55%), Positives = 72/95 (75%), Gaps = 2/95 (2%)
Frame = -3
Query: 279 RFLSPRNLGFNNKPMPNDFLVQKPM--TPIIDRFKAMLKDREDEIRALAQNDDDDVPPPS 106
R ++ + K MP++ L QKP TPI+DRF+A+LK R+D++R + +DDV PPS
Sbjct: 22 RLIASSSAATGTKAMPSNELAQKPQPPTPIVDRFRALLKQRDDDLRV---SPEDDVSPPS 78
Query: 105 TDEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
T+EIV+LYE++L+EL NSKPIITDLTIIAGEQR+
Sbjct: 79 TEEIVQLYEMVLAELIFNSKPIITDLTIIAGEQRD 113
>XP_007213705.1 hypothetical protein PRUPE_ppa000684mg [Prunus persica]
Length = 1037
Score = 105 bits (263), Expect = 5e-24
Identities = 53/95 (55%), Positives = 72/95 (75%), Gaps = 2/95 (2%)
Frame = -3
Query: 279 RFLSPRNLGFNNKPMPNDFLVQKPM--TPIIDRFKAMLKDREDEIRALAQNDDDDVPPPS 106
R ++ + K MP++ L QKP TPI+DRF+A+LK R+D++R + +DDV PPS
Sbjct: 22 RLIASSSAATGTKAMPSNELAQKPQPPTPIVDRFRALLKQRDDDLRV---SPEDDVSPPS 78
Query: 105 TDEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
T+EIV+LYE++L+EL NSKPIITDLTIIAGEQR+
Sbjct: 79 TEEIVQLYEMVLAELIFNSKPIITDLTIIAGEQRD 113
>GAV85191.1 CTD_bind domain-containing protein [Cephalotus follicularis]
Length = 1006
Score = 105 bits (262), Expect = 7e-24
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = -3
Query: 291 MDQLRFLSPRNLGFNNKPMPNDFLVQKPMTPIIDRFKAMLKDREDEIRALAQNDDDDVPP 112
M+ + ++PR++ + MP + L QK I+DRF+A+LK REDEIR DDD+VPP
Sbjct: 1 MESEKLMNPRSIPLT-RAMPGE-LAQKLGPTILDRFRALLKQREDEIRV--SGDDDEVPP 56
Query: 111 PSTDEIVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
PST+EIV LYE++LSELT N KPIITDLTIIAG+Q+E
Sbjct: 57 PSTEEIVHLYEVLLSELTFNFKPIITDLTIIAGDQKE 93
>KVH97398.1 CID domain-containing protein [Cynara cardunculus var. scolymus]
Length = 954
Score = 105 bits (261), Expect = 9e-24
Identities = 59/104 (56%), Positives = 74/104 (71%), Gaps = 8/104 (7%)
Frame = -3
Query: 291 MDQLRFLSPRNLGFNNKPMPNDFLV-------QKPMTPIIDRFKAMLKDREDEIRALAQN 133
M+ FLS R++G+ +P PND + QK +TPI+DRFK +LK RE+EIR +
Sbjct: 1 MEGASFLSSRSIGY--RPAPNDSVAALASNNNQKSLTPILDRFKVLLKQREEEIRVSSGG 58
Query: 132 DDD-DVPPPSTDEIVRLYELILSELTLNSKPIITDLTIIAGEQR 4
DDD + P ST+EIV LYE +LSEL +NSKPIITDLTIIAGEQR
Sbjct: 59 DDDIESPVLSTEEIVELYEDVLSELIINSKPIITDLTIIAGEQR 102
>OAY24701.1 hypothetical protein MANES_17G036600 [Manihot esculenta]
Length = 1027
Score = 104 bits (259), Expect = 2e-23
Identities = 53/91 (58%), Positives = 71/91 (78%), Gaps = 1/91 (1%)
Frame = -3
Query: 270 SPRNLGFNNKPMPNDFLVQKPMTP-IIDRFKAMLKDREDEIRALAQNDDDDVPPPSTDEI 94
+PR G + KPMP++ L QKP P +++RF+A+LK RE+E+R A++DD VP ST+EI
Sbjct: 9 NPRFAGSSAKPMPSNELSQKPPPPSLLERFRALLKQREEEVRFSAEDDDVAVPSLSTEEI 68
Query: 93 VRLYELILSELTLNSKPIITDLTIIAGEQRE 1
V+LYEL+L ELT NSKP+I DLTI+AGE RE
Sbjct: 69 VQLYELMLDELTFNSKPLINDLTIVAGELRE 99
>XP_009340950.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like
isoform X4 [Pyrus x bretschneideri]
Length = 793
Score = 103 bits (258), Expect = 2e-23
Identities = 56/92 (60%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
Frame = -3
Query: 270 SPRNLGFNNKPMPNDFLVQKPM--TPIIDRFKAMLKDREDEIRALAQNDDDDVPPPSTDE 97
SP G K MP L QKP TPI+DRF+A+LK RE+++R + DD+V PPST+E
Sbjct: 18 SPHTAG---KAMPGAELTQKPQPPTPIVDRFRALLKQREEDLRV---SPDDEVSPPSTEE 71
Query: 96 IVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
IV LYE++LSEL NSKPIITDLTIIAGEQR+
Sbjct: 72 IVHLYEIVLSELIFNSKPIITDLTIIAGEQRD 103
>XP_008384033.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like
isoform X2 [Malus domestica] XP_008358744.1 PREDICTED:
polyadenylation and cleavage factor homolog 4-like
isoform X2 [Malus domestica]
Length = 794
Score = 103 bits (258), Expect = 2e-23
Identities = 56/92 (60%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
Frame = -3
Query: 270 SPRNLGFNNKPMPNDFLVQKPM--TPIIDRFKAMLKDREDEIRALAQNDDDDVPPPSTDE 97
SP G K MP L QKP TPI+DRF+A+LK RE+++R + DD+V PPST+E
Sbjct: 18 SPHTAG---KAMPGAELAQKPQPPTPIVDRFRALLKQREEDLRV---SPDDEVSPPSTEE 71
Query: 96 IVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
IV LYE++LSEL NSKPIITDLTIIAGEQR+
Sbjct: 72 IVHLYEMVLSELIFNSKPIITDLTIIAGEQRD 103
>XP_009340949.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like
isoform X3 [Pyrus x bretschneideri]
Length = 956
Score = 103 bits (258), Expect = 2e-23
Identities = 56/92 (60%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
Frame = -3
Query: 270 SPRNLGFNNKPMPNDFLVQKPM--TPIIDRFKAMLKDREDEIRALAQNDDDDVPPPSTDE 97
SP G K MP L QKP TPI+DRF+A+LK RE+++R + DD+V PPST+E
Sbjct: 18 SPHTAG---KAMPGAELTQKPQPPTPIVDRFRALLKQREEDLRV---SPDDEVSPPSTEE 71
Query: 96 IVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
IV LYE++LSEL NSKPIITDLTIIAGEQR+
Sbjct: 72 IVHLYEIVLSELIFNSKPIITDLTIIAGEQRD 103
>XP_018499458.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like
isoform X2 [Pyrus x bretschneideri]
Length = 967
Score = 103 bits (258), Expect = 2e-23
Identities = 56/92 (60%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
Frame = -3
Query: 270 SPRNLGFNNKPMPNDFLVQKPM--TPIIDRFKAMLKDREDEIRALAQNDDDDVPPPSTDE 97
SP G K MP L QKP TPI+DRF+A+LK RE+++R + DD+V PPST+E
Sbjct: 18 SPHTAG---KAMPGAELTQKPQPPTPIVDRFRALLKQREEDLRV---SPDDEVSPPSTEE 71
Query: 96 IVRLYELILSELTLNSKPIITDLTIIAGEQRE 1
IV LYE++LSEL NSKPIITDLTIIAGEQR+
Sbjct: 72 IVHLYEIVLSELIFNSKPIITDLTIIAGEQRD 103