BLASTX nr result

ID: Panax24_contig00032000 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax24_contig00032000
         (392 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_017226930.1 PREDICTED: pathogenesis-related homeodomain prote...    65   1e-09
KZM81484.1 hypothetical protein DCAR_029097 [Daucus carota subsp...    65   1e-09
XP_017228785.1 PREDICTED: pathogenesis-related homeodomain prote...    59   2e-07

>XP_017226930.1 PREDICTED: pathogenesis-related homeodomain protein [Daucus carota
           subsp. sativus]
          Length = 1096

 Score = 65.1 bits (157), Expect = 1e-09
 Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
 Frame = -2

Query: 271 MDVPAVQQNSKMEGSSSPKQCTSEQKHDFVPNGRCTTPVEQKHETAEDVQKASLEARVDE 92
           MD   +QQ +KME  SS K    EQ H+ + NGRCT P +  + TAEDVQKAS   +V  
Sbjct: 1   MDAFLMQQCTKMEERSSTKPKELEQVHNTLTNGRCTPPGQMDNVTAEDVQKASAGTKVGV 60

Query: 91  SVSISVKQLRPPKDS-KNVYCEQLPQDATLC 2
           +VS+  K +    DS K +   +LPQD  +C
Sbjct: 61  NVSVGDKIVPSADDSIKLLPFGELPQDMKMC 91


>KZM81484.1 hypothetical protein DCAR_029097 [Daucus carota subsp. sativus]
          Length = 1119

 Score = 65.1 bits (157), Expect = 1e-09
 Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
 Frame = -2

Query: 271 MDVPAVQQNSKMEGSSSPKQCTSEQKHDFVPNGRCTTPVEQKHETAEDVQKASLEARVDE 92
           MD   +QQ +KME  SS K    EQ H+ + NGRCT P +  + TAEDVQKAS   +V  
Sbjct: 1   MDAFLMQQCTKMEERSSTKPKELEQVHNTLTNGRCTPPGQMDNVTAEDVQKASAGTKVGV 60

Query: 91  SVSISVKQLRPPKDS-KNVYCEQLPQDATLC 2
           +VS+  K +    DS K +   +LPQD  +C
Sbjct: 61  NVSVGDKIVPSADDSIKLLPFGELPQDMKMC 91


>XP_017228785.1 PREDICTED: pathogenesis-related homeodomain protein-like [Daucus
           carota subsp. sativus]
          Length = 1267

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
 Frame = -2

Query: 250 QNSKMEGSSSPKQCTSEQKHDFVPNGRCTTPVEQKHETAEDVQKASLEARVDESVSISVK 71
           Q S ME  S       EQ  D VPNG CT PV+ ++  A+DV+K S EA+ +  VS+S K
Sbjct: 24  QRSNMEEISDQNPNALEQVLDTVPNGNCTAPVQLENVAADDVRKTSGEAKFEGYVSVSAK 83

Query: 70  QLRPPKDS-KNVYCEQLPQDATLC 2
            ++  +DS K +  +  P+D  LC
Sbjct: 84  IVQSEEDSTKFLSHKDFPEDMKLC 107


Top