BLASTX nr result
ID: Panax24_contig00030176
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00030176
(513 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_017216116.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 173 7e-49
XP_019078311.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 164 2e-45
CDP04372.1 unnamed protein product [Coffea canephora] 161 3e-44
XP_019223740.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 157 1e-43
XP_019223734.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 157 6e-43
KZM82297.1 hypothetical protein DCAR_029795 [Daucus carota subsp... 152 8e-43
XP_006348094.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 155 3e-42
XP_009777366.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 155 7e-42
XP_009624455.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 155 7e-42
XP_016493787.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 154 1e-41
XP_011086178.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 154 2e-41
XP_017224245.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 152 4e-41
OMO76757.1 Pseudouridine synthase, RsuA/RluB/C/D/E/F [Corchorus ... 152 9e-41
XP_004232727.2 PREDICTED: RNA pseudouridine synthase 6, chloropl... 151 1e-40
XP_015065694.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 150 3e-40
XP_018833481.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 149 7e-40
XP_017224248.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 147 8e-40
XP_017224247.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 147 9e-40
XP_008224796.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 147 3e-39
XP_017224244.1 PREDICTED: RNA pseudouridine synthase 6, chloropl... 147 4e-39
>XP_017216116.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X1 [Daucus carota subsp. sativus]
Length = 473
Score = 173 bits (438), Expect = 7e-49
Identities = 97/154 (62%), Positives = 111/154 (72%), Gaps = 4/154 (2%)
Frame = +2
Query: 59 MATITSTFAGNLVSSLLWTSGCRSFFTPVALVRTLASTHTLISCNSHLIGNRN----RSF 226
MA ++S+F N + S L+ G S P+ALVRTLASTHTLI NSHL N R
Sbjct: 1 MAILSSSFLSNNIMSSLF--GSSSLAGPLALVRTLASTHTLIRRNSHLFTRANTPPTRRI 58
Query: 227 RCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKALD 406
C S+++ VH+ T+ SSNGN YGRLLPCPS + PPRIEHLVV +GGTVLEYI K LD
Sbjct: 59 FCSQSSAVTVHN--TAISSNGNPEYGRLLPCPSHHGPPRIEHLVVKDGGTVLEYICKVLD 116
Query: 407 LSPLFVADLIHFGAVYYALVFPKPPPSVATPENI 508
L PLFVADLIHFGAVYYALV PKPPP+ ATPE I
Sbjct: 117 LPPLFVADLIHFGAVYYALVCPKPPPT-ATPEEI 149
>XP_019078311.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1
[Vitis vinifera] CBI23187.3 unnamed protein product,
partial [Vitis vinifera]
Length = 472
Score = 164 bits (415), Expect = 2e-45
Identities = 92/150 (61%), Positives = 106/150 (70%)
Frame = +2
Query: 62 ATITSTFAGNLVSSLLWTSGCRSFFTPVALVRTLASTHTLISCNSHLIGNRNRSFRCKSS 241
A +TS F LVSSL W S CRSF TPVAL RTLAS++ + ++ N C
Sbjct: 4 AILTSIFTSGLVSSL-WNSNCRSFGTPVALARTLASSNVFSRRHKRVVWCSNNP-TCTRE 61
Query: 242 ASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKALDLSPLF 421
+ SA+TS S NG Y RLLPCPSQN PPR+EHLVVSEGG VL+YI+KALDL PLF
Sbjct: 62 LTASSDSANTS-SVNGYPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLPPLF 120
Query: 422 VADLIHFGAVYYALVFPKPPPSVATPENIK 511
VADLIHFGAVYYALV P+PPPS ATPE ++
Sbjct: 121 VADLIHFGAVYYALVCPEPPPS-ATPEQVR 149
>CDP04372.1 unnamed protein product [Coffea canephora]
Length = 486
Score = 161 bits (407), Expect = 3e-44
Identities = 93/160 (58%), Positives = 109/160 (68%), Gaps = 10/160 (6%)
Frame = +2
Query: 62 ATITSTFAGNLVSSLLWTSGCR-SFFTPVALVRTLASTHTLISC---NSHLIG------N 211
AT+ S +SSL+W+S R + +PV LV LAS H NS+ I +
Sbjct: 5 ATLASILTNTSLSSLVWSSTYRRTLLSPVRLVCRLASNHFWTENYQKNSNFITWDSRARS 64
Query: 212 RNRSFRCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYI 391
R RSF C+S+AS +V S S SSNG YGRLLPCPS+N PPR+EHLVV EGG VL+YI
Sbjct: 65 RYRSFSCQSTASSNVDSTPDSVSSNGFRRYGRLLPCPSENGPPRVEHLVVKEGGPVLDYI 124
Query: 392 TKALDLSPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
+ +LDL PLFVADLIHFGAVYYALV PKPPPS ATPE IK
Sbjct: 125 SNSLDLPPLFVADLIHFGAVYYALVCPKPPPS-ATPEQIK 163
>XP_019223740.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X2
[Nicotiana attenuata]
Length = 404
Score = 157 bits (398), Expect = 1e-43
Identities = 84/156 (53%), Positives = 111/156 (71%), Gaps = 6/156 (3%)
Frame = +2
Query: 62 ATITSTFAGNLVSSLLWTSGCRS-FFTPVALVRTLASTHTLISCNSH-----LIGNRNRS 223
A++T F L++S +WT R+ F +PV L+ TLAS+ + + N + + + +R
Sbjct: 6 ASLTPIFTNCLIASRIWTPNWRNGFVSPVTLLHTLASSRSRLLKNKNHYQDLVFSSCSRG 65
Query: 224 FRCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKAL 403
FRC+S+A DV+S + SSNG+L YGRLLPCP QN PPR+EHLVV++ G VL+YI+KAL
Sbjct: 66 FRCQSTALSDVNSTSHTVSSNGHLMYGRLLPCPLQNSPPRVEHLVVTKEGPVLDYISKAL 125
Query: 404 DLSPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
DL PL+V DLI FGAVYYALV PKPPP+ AT E IK
Sbjct: 126 DLPPLYVEDLIQFGAVYYALVCPKPPPT-ATAEQIK 160
>XP_019223734.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1
[Nicotiana attenuata] OIT05735.1 rna uridine synthase 6,
chloroplastic [Nicotiana attenuata]
Length = 483
Score = 157 bits (398), Expect = 6e-43
Identities = 84/156 (53%), Positives = 111/156 (71%), Gaps = 6/156 (3%)
Frame = +2
Query: 62 ATITSTFAGNLVSSLLWTSGCRS-FFTPVALVRTLASTHTLISCNSH-----LIGNRNRS 223
A++T F L++S +WT R+ F +PV L+ TLAS+ + + N + + + +R
Sbjct: 6 ASLTPIFTNCLIASRIWTPNWRNGFVSPVTLLHTLASSRSRLLKNKNHYQDLVFSSCSRG 65
Query: 224 FRCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKAL 403
FRC+S+A DV+S + SSNG+L YGRLLPCP QN PPR+EHLVV++ G VL+YI+KAL
Sbjct: 66 FRCQSTALSDVNSTSHTVSSNGHLMYGRLLPCPLQNSPPRVEHLVVTKEGPVLDYISKAL 125
Query: 404 DLSPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
DL PL+V DLI FGAVYYALV PKPPP+ AT E IK
Sbjct: 126 DLPPLYVEDLIQFGAVYYALVCPKPPPT-ATAEQIK 160
>KZM82297.1 hypothetical protein DCAR_029795 [Daucus carota subsp. sativus]
Length = 286
Score = 152 bits (385), Expect = 8e-43
Identities = 89/157 (56%), Positives = 111/157 (70%), Gaps = 6/157 (3%)
Frame = +2
Query: 59 MATITSTF-AGNLVSSLLWTSGCRSFFTPVALVRTLASTHTLISCNSHLIGNRN-----R 220
MA ++S+F + N++SSLL +S +L STHTLI NSHL+ + N R
Sbjct: 1 MAILSSSFLSNNIMSSLLGSS-------------SLVSTHTLIRRNSHLLKHANTPPKRR 47
Query: 221 SFRCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKA 400
SF C S+++ VH+ T+ SSNG YGRLLPCPS + PPR+EHLVV +GGTVLEYI K
Sbjct: 48 SF-CSQSSAVTVHN--TTISSNGTPKYGRLLPCPSHHGPPRVEHLVVKDGGTVLEYICKV 104
Query: 401 LDLSPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
LDL PLFVADLIHFGAV+YALV PKPPP+ ATP+ I+
Sbjct: 105 LDLPPLFVADLIHFGAVHYALVCPKPPPT-ATPKEIE 140
>XP_006348094.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1
[Solanum tuberosum] XP_006348095.1 PREDICTED: RNA
pseudouridine synthase 6, chloroplastic isoform X1
[Solanum tuberosum] XP_015164559.1 PREDICTED: RNA
pseudouridine synthase 6, chloroplastic isoform X1
[Solanum tuberosum] XP_015164560.1 PREDICTED: RNA
pseudouridine synthase 6, chloroplastic isoform X1
[Solanum tuberosum]
Length = 483
Score = 155 bits (393), Expect = 3e-42
Identities = 82/155 (52%), Positives = 107/155 (69%), Gaps = 6/155 (3%)
Frame = +2
Query: 65 TITSTFAGNLVSSLLWTSGCRS-FFTPVALVRTLASTHTLISCNSH-----LIGNRNRSF 226
+ T +L++S LWT R+ FF+P +V T AST + + N + + + +RSF
Sbjct: 7 SFTPILTNSLIASRLWTPNWRNGFFSPFNMVHTFASTRSRLLKNKNHYKRLALSSCSRSF 66
Query: 227 RCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKALD 406
C+S+A D+ S + SSNG+L YGRL+PCP QN PPR+EHLVV++ G VLEYI KALD
Sbjct: 67 SCQSTALSDISSTSHTVSSNGHLRYGRLMPCPLQNSPPRVEHLVVTKEGPVLEYICKALD 126
Query: 407 LSPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
L PL+V DLI FGAVYYALV PKPPP+ A+PE IK
Sbjct: 127 LPPLYVEDLIQFGAVYYALVCPKPPPT-ASPEQIK 160
>XP_009777366.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Nicotiana
sylvestris] XP_016460890.1 PREDICTED: RNA pseudouridine
synthase 6, chloroplastic-like [Nicotiana tabacum]
Length = 483
Score = 155 bits (391), Expect = 7e-42
Identities = 83/156 (53%), Positives = 110/156 (70%), Gaps = 6/156 (3%)
Frame = +2
Query: 62 ATITSTFAGNLVSSLLWTSGCRS-FFTPVALVRTLASTHTLISCNSH-----LIGNRNRS 223
A++T F L++S +WT R+ F +PV L+ TLAS+ + + N + + + +R
Sbjct: 6 ASLTPIFTNCLIASRIWTPNWRNGFVSPVTLLHTLASSRSRLLKNKNQYQDLVFSSCSRG 65
Query: 224 FRCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKAL 403
F C+S+A DV+S + SSNG+L YGRLLPCP QN PPR+EHLVV++ G VL+YI+KAL
Sbjct: 66 FSCQSTALSDVNSPSHTVSSNGHLMYGRLLPCPLQNSPPRVEHLVVTKEGPVLDYISKAL 125
Query: 404 DLSPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
DL PL+V DLI FGAVYYALV PKPPP+ AT E IK
Sbjct: 126 DLPPLYVEDLIQFGAVYYALVCPKPPPT-ATAEQIK 160
>XP_009624455.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Nicotiana
tomentosiformis]
Length = 483
Score = 155 bits (391), Expect = 7e-42
Identities = 83/156 (53%), Positives = 110/156 (70%), Gaps = 6/156 (3%)
Frame = +2
Query: 62 ATITSTFAGNLVSSLLWTSGCRS-FFTPVALVRTLASTHTLISCNSH-----LIGNRNRS 223
A++T F L++S +WT R+ F +PV L+ TLAS+ + + N + + + +R
Sbjct: 6 ASLTPIFTNCLIASRIWTPNWRNGFVSPVTLLHTLASSRSRLLKNKNHYQDLVFSSCSRG 65
Query: 224 FRCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKAL 403
F C+S+A DV+S + SSNG+L YGRLLPCP QN PPR+EHLVV++ G VL+YI+KAL
Sbjct: 66 FSCQSTALSDVNSPSHTVSSNGHLMYGRLLPCPLQNSPPRVEHLVVTKEGPVLDYISKAL 125
Query: 404 DLSPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
DL PL+V DLI FGAVYYALV PKPPP+ AT E IK
Sbjct: 126 DLPPLYVEDLIQFGAVYYALVCPKPPPT-ATAEQIK 160
>XP_016493787.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like
[Nicotiana tabacum]
Length = 483
Score = 154 bits (389), Expect = 1e-41
Identities = 82/156 (52%), Positives = 110/156 (70%), Gaps = 6/156 (3%)
Frame = +2
Query: 62 ATITSTFAGNLVSSLLWTSGCRS-FFTPVALVRTLASTHTLISCNSH-----LIGNRNRS 223
A++T F L++S +WT R+ F +P+ L+ TLAS+ + + N + + + +R
Sbjct: 6 ASLTPIFTNCLIASRIWTPNWRNGFVSPITLLHTLASSRSRLLKNKNHYQDLVFSSCSRG 65
Query: 224 FRCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKAL 403
F C+S+A DV+S + SSNG+L YGRLLPCP QN PPR+EHLVV++ G VL+YI+KAL
Sbjct: 66 FSCQSTALSDVNSHSHTVSSNGHLMYGRLLPCPLQNSPPRVEHLVVTKEGPVLDYISKAL 125
Query: 404 DLSPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
DL PL+V DLI FGAVYYALV PKPPP+ AT E IK
Sbjct: 126 DLPPLYVEDLIQFGAVYYALVCPKPPPT-ATAEQIK 160
>XP_011086178.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Sesamum
indicum]
Length = 484
Score = 154 bits (388), Expect = 2e-41
Identities = 93/160 (58%), Positives = 112/160 (70%), Gaps = 12/160 (7%)
Frame = +2
Query: 68 ITSTFAGNLVSSLLWTSGCR-SFFTPVALVRTLAST----------HTLISCNSHLIGNR 214
++ST AG++VSSLL S R +FFT + L RTLA+T HTLI+ G R
Sbjct: 11 LSSTLAGSVVSSLLSASSFRRNFFTHINLARTLAATNCRFKNIHKHHTLIA------GKR 64
Query: 215 NRSFRCKSSASLDVHS-ADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYI 391
N S C+S+AS D+ + + S+N YGRLLPCPSQN PPR+EHLVVS+GG VLEYI
Sbjct: 65 NLS--CESTASADISTNSSIHISNNSYPPYGRLLPCPSQNGPPRVEHLVVSKGGPVLEYI 122
Query: 392 TKALDLSPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
+ AL+L PLFVADLIHFGAV+YALV P PPPS ATPE IK
Sbjct: 123 SSALNLPPLFVADLIHFGAVFYALVCPDPPPS-ATPEQIK 161
>XP_017224245.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X2 [Daucus carota subsp. sativus]
Length = 463
Score = 152 bits (385), Expect = 4e-41
Identities = 89/157 (56%), Positives = 111/157 (70%), Gaps = 6/157 (3%)
Frame = +2
Query: 59 MATITSTF-AGNLVSSLLWTSGCRSFFTPVALVRTLASTHTLISCNSHLIGNRN-----R 220
MA ++S+F + N++SSLL +S +L STHTLI NSHL+ + N R
Sbjct: 1 MAILSSSFLSNNIMSSLLGSS-------------SLVSTHTLIRRNSHLLKHANTPPKRR 47
Query: 221 SFRCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKA 400
SF C S+++ VH+ T+ SSNG YGRLLPCPS + PPR+EHLVV +GGTVLEYI K
Sbjct: 48 SF-CSQSSAVTVHN--TTISSNGTPKYGRLLPCPSHHGPPRVEHLVVKDGGTVLEYICKV 104
Query: 401 LDLSPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
LDL PLFVADLIHFGAV+YALV PKPPP+ ATP+ I+
Sbjct: 105 LDLPPLFVADLIHFGAVHYALVCPKPPPT-ATPKEIE 140
>OMO76757.1 Pseudouridine synthase, RsuA/RluB/C/D/E/F [Corchorus capsularis]
Length = 475
Score = 152 bits (383), Expect = 9e-41
Identities = 88/163 (53%), Positives = 107/163 (65%), Gaps = 13/163 (7%)
Frame = +2
Query: 62 ATITSTFAGNLVSSLLWTSGCRSFFTPVALVRTLASTH-------------TLISCNSHL 202
A++TS F GN GCRS PV+L+RTLAS++ T++SC
Sbjct: 4 ASLTSIFFGN---------GCRSLSAPVSLLRTLASSNASSLYKLRKNNSKTVLSC---- 50
Query: 203 IGNRNRSFRCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVL 382
+ + R C SS +DV ++++ NG Y RLLPCPS+N PPR+EHLVVSEGG VL
Sbjct: 51 LSSSKRGLSCLSS-KVDVAQTASTSTVNGYPEYHRLLPCPSENGPPRVEHLVVSEGGPVL 109
Query: 383 EYITKALDLSPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
EYI KALDL PLFVADLIHFGAVYYALV P+PPPS ATPE +K
Sbjct: 110 EYICKALDLPPLFVADLIHFGAVYYALVCPQPPPS-ATPEQVK 151
>XP_004232727.2 PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Solanum
lycopersicum] XP_010316608.1 PREDICTED: RNA
pseudouridine synthase 6, chloroplastic [Solanum
lycopersicum] XP_010316609.1 PREDICTED: RNA
pseudouridine synthase 6, chloroplastic [Solanum
lycopersicum] XP_010316610.1 PREDICTED: RNA
pseudouridine synthase 6, chloroplastic [Solanum
lycopersicum]
Length = 483
Score = 151 bits (382), Expect = 1e-40
Identities = 79/155 (50%), Positives = 108/155 (69%), Gaps = 6/155 (3%)
Frame = +2
Query: 65 TITSTFAGNLVSSLLWTSGCRS-FFTPVALVRTLASTHTLISCNSH-----LIGNRNRSF 226
+ T +L++S LWT R+ FF+P +V T AS+ + + N + + + ++SF
Sbjct: 7 SFTPIVTNSLIASRLWTPNWRNGFFSPFNMVHTFASSRSRLLKNKNHYKRLALSSCSKSF 66
Query: 227 RCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKALD 406
C+S+A D++S + SSNG+L YGRL+PCP QN PPR+EHLVV++ G V+EYI KALD
Sbjct: 67 CCQSTALSDINSTSHTVSSNGHLRYGRLMPCPLQNSPPRVEHLVVTKEGPVVEYICKALD 126
Query: 407 LSPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
L PL+V DLI FGAVYYALV PKPPP+ A+PE IK
Sbjct: 127 LPPLYVEDLIQFGAVYYALVCPKPPPT-ASPEQIK 160
>XP_015065694.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Solanum
pennellii] XP_015065695.1 PREDICTED: RNA pseudouridine
synthase 6, chloroplastic [Solanum pennellii]
XP_015065696.1 PREDICTED: RNA pseudouridine synthase 6,
chloroplastic [Solanum pennellii]
Length = 483
Score = 150 bits (380), Expect = 3e-40
Identities = 79/155 (50%), Positives = 107/155 (69%), Gaps = 6/155 (3%)
Frame = +2
Query: 65 TITSTFAGNLVSSLLWTSGCRS-FFTPVALVRTLASTHTLISCNSH-----LIGNRNRSF 226
+ T +L++S LWT R+ FF+P +V T AS+ + + N + + + ++SF
Sbjct: 7 SFTPIVTNSLIASRLWTPNWRNGFFSPFNMVHTFASSRSRLLKNKNHYKRLALSSCSKSF 66
Query: 227 RCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKALD 406
C+S+A D++S + SSNG+L YGRL+PCP QN PPR+EHLVV++ G VLEYI KALD
Sbjct: 67 SCQSTALSDINSTSPTVSSNGHLRYGRLMPCPLQNSPPRVEHLVVTKEGPVLEYICKALD 126
Query: 407 LSPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
L PL+V DLI FGAVYYALV PKPPP+ A+ E IK
Sbjct: 127 LPPLYVEDLIQFGAVYYALVCPKPPPT-ASSEQIK 160
>XP_018833481.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1
[Juglans regia]
Length = 477
Score = 149 bits (377), Expect = 7e-40
Identities = 87/154 (56%), Positives = 101/154 (65%), Gaps = 12/154 (7%)
Frame = +2
Query: 86 GNLVSSLLWTSGCRSFFTPVALVRTLASTH------------TLISCNSHLIGNRNRSFR 229
G+ + + +GCRSF P+ALVRTLA+TH T S +S + R F
Sbjct: 2 GSASFASILANGCRSFSLPMALVRTLATTHAAFGKHYDNKHVTAWSSSSGCSQSNGRVFA 61
Query: 230 CKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKALDL 409
C SS+S T+A++ Y RLLPCPSQN PPR+EHLVVSEG VLEYI KALDL
Sbjct: 62 CASSSS----GVTTAAAAKCYPEYDRLLPCPSQNGPPRVEHLVVSEGVPVLEYICKALDL 117
Query: 410 SPLFVADLIHFGAVYYALVFPKPPPSVATPENIK 511
PLFVADLIHFGAVYYALV PKPPPS ATPE I+
Sbjct: 118 PPLFVADLIHFGAVYYALVCPKPPPS-ATPEQIR 150
>XP_017224248.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X5 [Daucus carota subsp. sativus]
Length = 372
Score = 147 bits (371), Expect = 8e-40
Identities = 89/160 (55%), Positives = 111/160 (69%), Gaps = 9/160 (5%)
Frame = +2
Query: 59 MATITSTF-AGNLVSSLLWTSGCRSFFTPVALVRTLASTHTLISCNSHLIGNRN-----R 220
MA ++S+F + N++SSLL +S +L STHTLI NSHL+ + N R
Sbjct: 1 MAILSSSFLSNNIMSSLLGSS-------------SLVSTHTLIRRNSHLLKHANTPPKRR 47
Query: 221 SFRCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKA 400
SF C S+++ VH+ T+ SSNG YGRLLPCPS + PPR+EHLVV +GGTVLEYI K
Sbjct: 48 SF-CSQSSAVTVHN--TTISSNGTPKYGRLLPCPSHHGPPRVEHLVVKDGGTVLEYICKV 104
Query: 401 LDLSPL---FVADLIHFGAVYYALVFPKPPPSVATPENIK 511
LDL PL FVADLIHFGAV+YALV PKPPP+ ATP+ I+
Sbjct: 105 LDLPPLFKRFVADLIHFGAVHYALVCPKPPPT-ATPKEIE 143
>XP_017224247.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X4 [Daucus carota subsp. sativus]
Length = 382
Score = 147 bits (371), Expect = 9e-40
Identities = 89/160 (55%), Positives = 111/160 (69%), Gaps = 9/160 (5%)
Frame = +2
Query: 59 MATITSTF-AGNLVSSLLWTSGCRSFFTPVALVRTLASTHTLISCNSHLIGNRN-----R 220
MA ++S+F + N++SSLL +S +L STHTLI NSHL+ + N R
Sbjct: 1 MAILSSSFLSNNIMSSLLGSS-------------SLVSTHTLIRRNSHLLKHANTPPKRR 47
Query: 221 SFRCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKA 400
SF C S+++ VH+ T+ SSNG YGRLLPCPS + PPR+EHLVV +GGTVLEYI K
Sbjct: 48 SF-CSQSSAVTVHN--TTISSNGTPKYGRLLPCPSHHGPPRVEHLVVKDGGTVLEYICKV 104
Query: 401 LDLSPL---FVADLIHFGAVYYALVFPKPPPSVATPENIK 511
LDL PL FVADLIHFGAV+YALV PKPPP+ ATP+ I+
Sbjct: 105 LDLPPLFKRFVADLIHFGAVHYALVCPKPPPT-ATPKEIE 143
>XP_008224796.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Prunus
mume]
Length = 469
Score = 147 bits (372), Expect = 3e-39
Identities = 83/143 (58%), Positives = 94/143 (65%), Gaps = 11/143 (7%)
Frame = +2
Query: 116 SGCRSFFTPVALVRTLASTHTLISCNSHLI-----------GNRNRSFRCKSSASLDVHS 262
SGCRSF PVALVRTLA TH +S +++ + +F CKS DV
Sbjct: 4 SGCRSFSAPVALVRTLALTHVALSEHANNYKHVKVACFSRSSKKRTTFACKSLKQ-DVTQ 62
Query: 263 ADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKALDLSPLFVADLIHF 442
+S NG Y RLLPCPS N PPR+EHLVVSEGG VLEYI K LDL P FVADLIHF
Sbjct: 63 PTAVSSVNGYPEYTRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKTLDLPPQFVADLIHF 122
Query: 443 GAVYYALVFPKPPPSVATPENIK 511
GAVYYALV PKPPP+ ATPE ++
Sbjct: 123 GAVYYALVCPKPPPT-ATPEQMR 144
>XP_017224244.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X1 [Daucus carota subsp. sativus]
Length = 466
Score = 147 bits (371), Expect = 4e-39
Identities = 89/160 (55%), Positives = 111/160 (69%), Gaps = 9/160 (5%)
Frame = +2
Query: 59 MATITSTF-AGNLVSSLLWTSGCRSFFTPVALVRTLASTHTLISCNSHLIGNRN-----R 220
MA ++S+F + N++SSLL +S +L STHTLI NSHL+ + N R
Sbjct: 1 MAILSSSFLSNNIMSSLLGSS-------------SLVSTHTLIRRNSHLLKHANTPPKRR 47
Query: 221 SFRCKSSASLDVHSADTSASSNGNLNYGRLLPCPSQNIPPRIEHLVVSEGGTVLEYITKA 400
SF C S+++ VH+ T+ SSNG YGRLLPCPS + PPR+EHLVV +GGTVLEYI K
Sbjct: 48 SF-CSQSSAVTVHN--TTISSNGTPKYGRLLPCPSHHGPPRVEHLVVKDGGTVLEYICKV 104
Query: 401 LDLSPL---FVADLIHFGAVYYALVFPKPPPSVATPENIK 511
LDL PL FVADLIHFGAV+YALV PKPPP+ ATP+ I+
Sbjct: 105 LDLPPLFKRFVADLIHFGAVHYALVCPKPPPT-ATPKEIE 143