BLASTX nr result
ID: Panax24_contig00029989
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00029989
(452 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_017234881.1 PREDICTED: regulator of nonsense transcripts UPF3... 107 3e-24
GAV63295.1 Smg4_UPF3 domain-containing protein [Cephalotus folli... 105 8e-24
XP_010657967.1 PREDICTED: regulator of nonsense transcripts UPF3... 103 7e-23
XP_017227081.1 PREDICTED: regulator of nonsense transcripts UPF3... 102 1e-22
XP_006385051.1 hypothetical protein POPTR_0004s23450g [Populus t... 102 2e-22
XP_011028363.1 PREDICTED: regulator of nonsense transcripts UPF3... 101 3e-22
XP_011028362.1 PREDICTED: regulator of nonsense transcripts UPF3... 101 3e-22
KDO41300.1 hypothetical protein CISIN_1g0102242mg, partial [Citr... 96 2e-21
KVI11060.1 Nucleotide-binding, alpha-beta plait, partial [Cynara... 99 3e-21
XP_018811002.1 PREDICTED: regulator of nonsense transcripts UPF3... 98 4e-21
XP_006389505.1 hypothetical protein POPTR_0022s00460g [Populus t... 97 1e-20
EEF35930.1 conserved hypothetical protein [Ricinus communis] 97 1e-20
XP_015579219.1 PREDICTED: regulator of nonsense transcripts UPF3... 97 2e-20
XP_015579218.1 PREDICTED: regulator of nonsense transcripts UPF3... 97 2e-20
XP_006431585.1 hypothetical protein CICLE_v10000901mg [Citrus cl... 96 3e-20
XP_006385052.1 Smg-4/UPF3 family protein [Populus trichocarpa] E... 95 5e-20
XP_011047887.1 PREDICTED: regulator of nonsense transcripts UPF3... 94 1e-19
XP_011047886.1 PREDICTED: regulator of nonsense transcripts UPF3... 94 1e-19
XP_011047885.1 PREDICTED: regulator of nonsense transcripts UPF3... 94 1e-19
XP_011047883.1 PREDICTED: regulator of nonsense transcripts UPF3... 94 1e-19
>XP_017234881.1 PREDICTED: regulator of nonsense transcripts UPF3-like [Daucus
carota subsp. sativus] KZN05826.1 hypothetical protein
DCAR_006663 [Daucus carota subsp. sativus]
Length = 503
Score = 107 bits (266), Expect = 3e-24
Identities = 50/86 (58%), Positives = 63/86 (73%)
Frame = +2
Query: 98 DPAEGTHGDTKNDVLSACSGDFKHINSGHISHLAVDIGTYKHVGRRGPQHNLKDTAGSLI 277
DP EG GD+K ++L++ + KH+ GH H++VD +YKH GR G QHN KDT G +I
Sbjct: 415 DPREGGQGDSKKNMLASKREELKHVGRGH--HISVDNSSYKHSGRHGLQHNGKDTDGPMI 472
Query: 278 VGEGKPLKRGGSSSYSSHEKQVWVQK 355
+GEGKP K+G SS YSSHEKQVWVQK
Sbjct: 473 IGEGKPFKKGLSSGYSSHEKQVWVQK 498
>GAV63295.1 Smg4_UPF3 domain-containing protein [Cephalotus follicularis]
Length = 522
Score = 105 bits (263), Expect = 8e-24
Identities = 52/118 (44%), Positives = 68/118 (57%)
Frame = +2
Query: 2 RGVWTPLHHXXXXXXXXXXXXXXXXXXXXXXXDPAEGTHGDTKNDVLSACSGDFKHINSG 181
RGVWT D EG+HGD K D+ +G+ +++ +
Sbjct: 400 RGVWTLRRSDGSYASDESLSSSASQPPPQLQLDSLEGSHGDVKVDISITRTGEVRNLGTL 459
Query: 182 HISHLAVDIGTYKHVGRRGPQHNLKDTAGSLIVGEGKPLKRGGSSSYSSHEKQVWVQK 355
SH ++D G+YKHVGRRGP ++KD GSL+ +GKPLKRGG+S Y SHEKQVWVQK
Sbjct: 460 RSSHSSIDNGSYKHVGRRGPTLSVKDADGSLVASDGKPLKRGGASGYVSHEKQVWVQK 517
>XP_010657967.1 PREDICTED: regulator of nonsense transcripts UPF3 isoform X4 [Vitis
vinifera] CBI29694.3 unnamed protein product, partial
[Vitis vinifera]
Length = 519
Score = 103 bits (256), Expect = 7e-23
Identities = 54/118 (45%), Positives = 68/118 (57%)
Frame = +2
Query: 2 RGVWTPLHHXXXXXXXXXXXXXXXXXXXXXXXDPAEGTHGDTKNDVLSACSGDFKHINSG 181
RGVWTPL D EG+HG+ ++D+ +A SG+ K + SG
Sbjct: 399 RGVWTPLRRSDGSHASDESLSSSASQPTSS--DFPEGSHGEMRSDMSNARSGEVKALGSG 456
Query: 182 HISHLAVDIGTYKHVGRRGPQHNLKDTAGSLIVGEGKPLKRGGSSSYSSHEKQVWVQK 355
H A+D G++KH GRRGP H++KD GS IV EGK KRG + Y SHEKQVWVQK
Sbjct: 457 RGGHSALDNGSHKHSGRRGPTHSVKDADGSSIVSEGKHSKRGSAPGYGSHEKQVWVQK 514
>XP_017227081.1 PREDICTED: regulator of nonsense transcripts UPF3 [Daucus carota
subsp. sativus] XP_017227082.1 PREDICTED: regulator of
nonsense transcripts UPF3 [Daucus carota subsp. sativus]
Length = 522
Score = 102 bits (254), Expect = 1e-22
Identities = 57/118 (48%), Positives = 64/118 (54%)
Frame = +2
Query: 2 RGVWTPLHHXXXXXXXXXXXXXXXXXXXXXXXDPAEGTHGDTKNDVLSACSGDFKHINSG 181
RGVWTPL D +EGT GDTKND+ S SG+ K SG
Sbjct: 402 RGVWTPLRRSDGLHASNESLSSSASQHMTSLLDTSEGTRGDTKNDMTSGRSGESK--GSG 459
Query: 182 HISHLAVDIGTYKHVGRRGPQHNLKDTAGSLIVGEGKPLKRGGSSSYSSHEKQVWVQK 355
H++VD G YK RRGP N KD GSL +GE KPLKRG S + S EKQVWVQK
Sbjct: 460 RGGHMSVDNGFYKQSNRRGPFQNGKDADGSLNLGEAKPLKRGNFSGHGSQEKQVWVQK 517
>XP_006385051.1 hypothetical protein POPTR_0004s23450g [Populus trichocarpa]
ERP62848.1 hypothetical protein POPTR_0004s23450g
[Populus trichocarpa]
Length = 520
Score = 102 bits (253), Expect = 2e-22
Identities = 53/118 (44%), Positives = 66/118 (55%)
Frame = +2
Query: 2 RGVWTPLHHXXXXXXXXXXXXXXXXXXXXXXXDPAEGTHGDTKNDVLSACSGDFKHINSG 181
RGVWTPL D ++G HGD K D L+ SG+ K + SG
Sbjct: 401 RGVWTPLRRSDGSYASDESLLSSASQSTQSVFDSSQGNHGDVKVDSLNLRSGEVKVLGSG 460
Query: 182 HISHLAVDIGTYKHVGRRGPQHNLKDTAGSLIVGEGKPLKRGGSSSYSSHEKQVWVQK 355
+H ++D G++KH GRRGP H ++D GS + E K KRGGSS Y SHEKQVWVQK
Sbjct: 461 RGNHSSLDNGSHKHFGRRGPSHIVRDADGSTV--EAKTPKRGGSSGYGSHEKQVWVQK 516
>XP_011028363.1 PREDICTED: regulator of nonsense transcripts UPF3-like isoform X2
[Populus euphratica]
Length = 520
Score = 101 bits (252), Expect = 3e-22
Identities = 52/118 (44%), Positives = 66/118 (55%)
Frame = +2
Query: 2 RGVWTPLHHXXXXXXXXXXXXXXXXXXXXXXXDPAEGTHGDTKNDVLSACSGDFKHINSG 181
RGVWTPL D ++G HGD K D L+ SG+ K + SG
Sbjct: 400 RGVWTPLRRSDGSYASDESLSSSASQSTQSVFDSSQGNHGDVKVDNLNLRSGEVKVLGSG 459
Query: 182 HISHLAVDIGTYKHVGRRGPQHNLKDTAGSLIVGEGKPLKRGGSSSYSSHEKQVWVQK 355
+H ++D G++KH GRRGP H ++D GS + E K KRGG+S Y SHEKQVWVQK
Sbjct: 460 RSNHSSLDNGSHKHFGRRGPSHIVRDAEGSAV--EAKTPKRGGASGYGSHEKQVWVQK 515
>XP_011028362.1 PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1
[Populus euphratica]
Length = 521
Score = 101 bits (252), Expect = 3e-22
Identities = 52/118 (44%), Positives = 66/118 (55%)
Frame = +2
Query: 2 RGVWTPLHHXXXXXXXXXXXXXXXXXXXXXXXDPAEGTHGDTKNDVLSACSGDFKHINSG 181
RGVWTPL D ++G HGD K D L+ SG+ K + SG
Sbjct: 401 RGVWTPLRRSDGSYASDESLSSSASQSTQSVFDSSQGNHGDVKVDNLNLRSGEVKVLGSG 460
Query: 182 HISHLAVDIGTYKHVGRRGPQHNLKDTAGSLIVGEGKPLKRGGSSSYSSHEKQVWVQK 355
+H ++D G++KH GRRGP H ++D GS + E K KRGG+S Y SHEKQVWVQK
Sbjct: 461 RSNHSSLDNGSHKHFGRRGPSHIVRDAEGSAV--EAKTPKRGGASGYGSHEKQVWVQK 516
>KDO41300.1 hypothetical protein CISIN_1g0102242mg, partial [Citrus sinensis]
KDO41301.1 hypothetical protein CISIN_1g0102242mg,
partial [Citrus sinensis]
Length = 253
Score = 95.9 bits (237), Expect = 2e-21
Identities = 46/86 (53%), Positives = 60/86 (69%)
Frame = +2
Query: 98 DPAEGTHGDTKNDVLSACSGDFKHINSGHISHLAVDIGTYKHVGRRGPQHNLKDTAGSLI 277
D +EG GD K D+ + SG+ K + G SH +VD G+++H+GRRGP H D GS +
Sbjct: 165 DSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRRGPTHVKDD--GSPV 222
Query: 278 VGEGKPLKRGGSSSYSSHEKQVWVQK 355
+ EGKPL+RGG+S Y SHEKQVWVQK
Sbjct: 223 MSEGKPLRRGGASGYGSHEKQVWVQK 248
>KVI11060.1 Nucleotide-binding, alpha-beta plait, partial [Cynara cardunculus
var. scolymus]
Length = 556
Score = 98.6 bits (244), Expect = 3e-21
Identities = 50/109 (45%), Positives = 60/109 (55%)
Frame = +2
Query: 2 RGVWTPLHHXXXXXXXXXXXXXXXXXXXXXXXDPAEGTHGDTKNDVLSACSGDFKHINSG 181
RGVWTPL D AEGTHG+ K+D+ +A GDFK I SG
Sbjct: 397 RGVWTPLRRSDGSHASDESLSSSTSQSTQMQPDSAEGTHGEVKSDLSNARGGDFKTIGSG 456
Query: 182 HISHLAVDIGTYKHVGRRGPQHNLKDTAGSLIVGEGKPLKRGGSSSYSS 328
H +VD G++KH GRRGP HN KD GS + EGKP KRG S+ Y +
Sbjct: 457 RGGHFSVDNGSHKHGGRRGPSHNAKDADGSPSLSEGKPAKRGVSAGYET 505
>XP_018811002.1 PREDICTED: regulator of nonsense transcripts UPF3-like isoform X2
[Juglans regia] XP_018811003.1 PREDICTED: regulator of
nonsense transcripts UPF3-like isoform X2 [Juglans
regia]
Length = 519
Score = 98.2 bits (243), Expect = 4e-21
Identities = 52/118 (44%), Positives = 68/118 (57%)
Frame = +2
Query: 2 RGVWTPLHHXXXXXXXXXXXXXXXXXXXXXXXDPAEGTHGDTKNDVLSACSGDFKHINSG 181
RGVWT L D EG+ GDT+ D+ +A G+ K++ +G
Sbjct: 400 RGVWTSLRRSDGSHTSDESLSSSISQLSQSPVDSFEGSLGDTQVDMANARCGEVKNLGTG 459
Query: 182 HISHLAVDIGTYKHVGRRGPQHNLKDTAGSLIVGEGKPLKRGGSSSYSSHEKQVWVQK 355
SH ++D G++KH GRRGP H +KDT GS IVGEGK ++G + Y SHEKQVWVQK
Sbjct: 460 RTSHSSMDNGSHKHFGRRGPAHVVKDTDGSSIVGEGKHSRKG--TGYVSHEKQVWVQK 515
>XP_006389505.1 hypothetical protein POPTR_0022s00460g [Populus trichocarpa]
ERP48419.1 hypothetical protein POPTR_0022s00460g
[Populus trichocarpa]
Length = 511
Score = 97.1 bits (240), Expect = 1e-20
Identities = 46/86 (53%), Positives = 60/86 (69%)
Frame = +2
Query: 98 DPAEGTHGDTKNDVLSACSGDFKHINSGHISHLAVDIGTYKHVGRRGPQHNLKDTAGSLI 277
D ++ HGD K D L+ SG+ K + SG +H ++D G++KH GRRGP H ++D GS +
Sbjct: 423 DSSQVNHGDVKADTLNLRSGEVKALGSGRSNHSSLDNGSHKHSGRRGPPHPVRDADGSTV 482
Query: 278 VGEGKPLKRGGSSSYSSHEKQVWVQK 355
EGK LKRGG+S Y SHEKQVWVQK
Sbjct: 483 --EGKSLKRGGASGYGSHEKQVWVQK 506
>EEF35930.1 conserved hypothetical protein [Ricinus communis]
Length = 472
Score = 96.7 bits (239), Expect = 1e-20
Identities = 53/119 (44%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Frame = +2
Query: 2 RGVWTPLHHXXXXXXXXXXXXXXXXXXXXXXXDPAEGTHGDTKNDVLSACSGDFKHINSG 181
R VWTPL D ++G GD K D ++ SGD K + SG
Sbjct: 351 RVVWTPLRRSDGSYASDESLSSSASQSTHTGQDSSQGNLGDIKVDSSNSRSGDVKTLGSG 410
Query: 182 HISHLAVDIGTYKHVGRRGPQHNLKDTAGSLIVGEGKPLKR-GGSSSYSSHEKQVWVQK 355
SH ++D G++KH GRRGP H ++D GS + EGKP KR GG+S Y SHEKQVWVQK
Sbjct: 411 RSSHSSLDNGSHKHFGRRGPSHTVRDADGSSL--EGKPSKRGGGASGYGSHEKQVWVQK 467
>XP_015579219.1 PREDICTED: regulator of nonsense transcripts UPF3 isoform X2
[Ricinus communis]
Length = 519
Score = 96.7 bits (239), Expect = 2e-20
Identities = 53/119 (44%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Frame = +2
Query: 2 RGVWTPLHHXXXXXXXXXXXXXXXXXXXXXXXDPAEGTHGDTKNDVLSACSGDFKHINSG 181
R VWTPL D ++G GD K D ++ SGD K + SG
Sbjct: 398 RVVWTPLRRSDGSYASDESLSSSASQSTHTGQDSSQGNLGDIKVDSSNSRSGDVKTLGSG 457
Query: 182 HISHLAVDIGTYKHVGRRGPQHNLKDTAGSLIVGEGKPLKR-GGSSSYSSHEKQVWVQK 355
SH ++D G++KH GRRGP H ++D GS + EGKP KR GG+S Y SHEKQVWVQK
Sbjct: 458 RSSHSSLDNGSHKHFGRRGPSHTVRDADGSSL--EGKPSKRGGGASGYGSHEKQVWVQK 514
>XP_015579218.1 PREDICTED: regulator of nonsense transcripts UPF3 isoform X1
[Ricinus communis]
Length = 527
Score = 96.7 bits (239), Expect = 2e-20
Identities = 53/119 (44%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Frame = +2
Query: 2 RGVWTPLHHXXXXXXXXXXXXXXXXXXXXXXXDPAEGTHGDTKNDVLSACSGDFKHINSG 181
R VWTPL D ++G GD K D ++ SGD K + SG
Sbjct: 406 RVVWTPLRRSDGSYASDESLSSSASQSTHTGQDSSQGNLGDIKVDSSNSRSGDVKTLGSG 465
Query: 182 HISHLAVDIGTYKHVGRRGPQHNLKDTAGSLIVGEGKPLKR-GGSSSYSSHEKQVWVQK 355
SH ++D G++KH GRRGP H ++D GS + EGKP KR GG+S Y SHEKQVWVQK
Sbjct: 466 RSSHSSLDNGSHKHFGRRGPSHTVRDADGSSL--EGKPSKRGGGASGYGSHEKQVWVQK 522
>XP_006431585.1 hypothetical protein CICLE_v10000901mg [Citrus clementina]
ESR44825.1 hypothetical protein CICLE_v10000901mg
[Citrus clementina]
Length = 514
Score = 95.9 bits (237), Expect = 3e-20
Identities = 46/86 (53%), Positives = 60/86 (69%)
Frame = +2
Query: 98 DPAEGTHGDTKNDVLSACSGDFKHINSGHISHLAVDIGTYKHVGRRGPQHNLKDTAGSLI 277
D +EG GD K D+ + SG+ K + G SH +VD G+++H+GRRGP H D GS +
Sbjct: 426 DSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRRGPTHVKDD--GSPV 483
Query: 278 VGEGKPLKRGGSSSYSSHEKQVWVQK 355
+ EGKPL+RGG+S Y SHEKQVWVQK
Sbjct: 484 MSEGKPLRRGGASGYGSHEKQVWVQK 509
>XP_006385052.1 Smg-4/UPF3 family protein [Populus trichocarpa] ERP62849.1
Smg-4/UPF3 family protein [Populus trichocarpa]
Length = 527
Score = 95.1 bits (235), Expect = 5e-20
Identities = 53/125 (42%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Frame = +2
Query: 2 RGVWTPLHHXXXXXXXXXXXXXXXXXXXXXXXDPAEGTHGDTKNDVLSACSGDFKHINSG 181
RGVWTPL D ++G HGD K D L+ SG+ K + SG
Sbjct: 401 RGVWTPLRRSDGSYASDESLLSSASQSTQSVFDSSQGNHGDVKVDSLNLRSGEVKVLGSG 460
Query: 182 HISHLAVDIGTYKHVGRRGPQHNLKDTAGSLIVGEGKPLKRGGSSSYSSHE-------KQ 340
+H ++D G++KH GRRGP H ++D GS + E K KRGGSS Y SHE KQ
Sbjct: 461 RGNHSSLDNGSHKHFGRRGPSHIVRDADGSTV--EAKTPKRGGSSGYGSHEVCSLDSQKQ 518
Query: 341 VWVQK 355
VWVQK
Sbjct: 519 VWVQK 523
>XP_011047887.1 PREDICTED: regulator of nonsense transcripts UPF3-like isoform X4
[Populus euphratica]
Length = 510
Score = 94.4 bits (233), Expect = 1e-19
Identities = 45/86 (52%), Positives = 59/86 (68%)
Frame = +2
Query: 98 DPAEGTHGDTKNDVLSACSGDFKHINSGHISHLAVDIGTYKHVGRRGPQHNLKDTAGSLI 277
D ++ HGD K D L+ SG+ K + SG +H ++D G+ KH GRRGP H ++D GS +
Sbjct: 422 DSSQVNHGDVKVDTLNLRSGEVKALGSGRSNHSSLDNGSQKHSGRRGPPHPVRDADGSTV 481
Query: 278 VGEGKPLKRGGSSSYSSHEKQVWVQK 355
EGK +KRGG+S Y SHEKQVWVQK
Sbjct: 482 --EGKTVKRGGASGYGSHEKQVWVQK 505
>XP_011047886.1 PREDICTED: regulator of nonsense transcripts UPF3-like isoform X3
[Populus euphratica]
Length = 511
Score = 94.4 bits (233), Expect = 1e-19
Identities = 45/86 (52%), Positives = 59/86 (68%)
Frame = +2
Query: 98 DPAEGTHGDTKNDVLSACSGDFKHINSGHISHLAVDIGTYKHVGRRGPQHNLKDTAGSLI 277
D ++ HGD K D L+ SG+ K + SG +H ++D G+ KH GRRGP H ++D GS +
Sbjct: 423 DSSQVNHGDVKVDTLNLRSGEVKALGSGRSNHSSLDNGSQKHSGRRGPPHPVRDADGSTV 482
Query: 278 VGEGKPLKRGGSSSYSSHEKQVWVQK 355
EGK +KRGG+S Y SHEKQVWVQK
Sbjct: 483 --EGKTVKRGGASGYGSHEKQVWVQK 506
>XP_011047885.1 PREDICTED: regulator of nonsense transcripts UPF3-like isoform X2
[Populus euphratica]
Length = 517
Score = 94.4 bits (233), Expect = 1e-19
Identities = 45/86 (52%), Positives = 59/86 (68%)
Frame = +2
Query: 98 DPAEGTHGDTKNDVLSACSGDFKHINSGHISHLAVDIGTYKHVGRRGPQHNLKDTAGSLI 277
D ++ HGD K D L+ SG+ K + SG +H ++D G+ KH GRRGP H ++D GS +
Sbjct: 429 DSSQVNHGDVKVDTLNLRSGEVKALGSGRSNHSSLDNGSQKHSGRRGPPHPVRDADGSTV 488
Query: 278 VGEGKPLKRGGSSSYSSHEKQVWVQK 355
EGK +KRGG+S Y SHEKQVWVQK
Sbjct: 489 --EGKTVKRGGASGYGSHEKQVWVQK 512
>XP_011047883.1 PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1
[Populus euphratica] XP_011047884.1 PREDICTED: regulator
of nonsense transcripts UPF3-like isoform X1 [Populus
euphratica]
Length = 518
Score = 94.4 bits (233), Expect = 1e-19
Identities = 45/86 (52%), Positives = 59/86 (68%)
Frame = +2
Query: 98 DPAEGTHGDTKNDVLSACSGDFKHINSGHISHLAVDIGTYKHVGRRGPQHNLKDTAGSLI 277
D ++ HGD K D L+ SG+ K + SG +H ++D G+ KH GRRGP H ++D GS +
Sbjct: 430 DSSQVNHGDVKVDTLNLRSGEVKALGSGRSNHSSLDNGSQKHSGRRGPPHPVRDADGSTV 489
Query: 278 VGEGKPLKRGGSSSYSSHEKQVWVQK 355
EGK +KRGG+S Y SHEKQVWVQK
Sbjct: 490 --EGKTVKRGGASGYGSHEKQVWVQK 513