BLASTX nr result
ID: Panax24_contig00028771
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00028771
(1962 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AQK70926.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 7e-44
AQK94585.1 Nuclear pore complex protein NUP205 [Zea mays] AQK945... 85 2e-38
AQK78972.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 87 5e-38
OIT28878.1 dead-box atp-dependent rna helicase 32 [Nicotiana att... 85 2e-34
ONM31803.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 80 4e-34
CBL94163.1 putative RNA-directed DNA polymerase (Reverse transcr... 80 4e-33
AAT40504.2 Polyprotein, putative [Solanum demissum] 88 7e-32
OIT39959.1 histone deacetylase 14 [Nicotiana attenuata] 87 1e-31
AQK66479.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 92 8e-31
AQK84025.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 2e-30
AQL03708.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 90 3e-30
XP_009622333.1 PREDICTED: uncharacterized protein LOC104113756 [... 84 3e-30
AQK78701.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 90 4e-30
AQK92036.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 86 5e-30
ONM03863.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 86 8e-30
ONM52836.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 1e-29
ONM32720.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 1e-29
ONM06616.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 1e-29
ONM29620.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 1e-29
AQK46390.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 88 1e-29
>AQK70926.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 790
Score = 87.8 bits (216), Expect(6) = 7e-44
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 514 LFALVIDEVTRDIQRDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 573
Query: 1310 VF 1315
+
Sbjct: 574 EY 575
Score = 53.1 bits (126), Expect(6) = 7e-44
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 1645
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 647 LKGKFYRTAIRPAMLYGAE-CWPTKRQHVQQLSVTEMRMLRWICGHTRRDRVRNDDIRER 705
Query: 1646 VGVAPIEVKISEHR 1687
VGVAPIE K+ +HR
Sbjct: 706 VGVAPIEEKLMQHR 719
Score = 51.2 bits (121), Expect(6) = 7e-44
Identities = 25/52 (48%), Positives = 33/52 (63%)
Frame = +1
Query: 985 KKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 1140
K KVS KY+++I++MY T V+T DG + D PI I +HQGS L F L
Sbjct: 466 KHKVSTKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSTLNPYLFAL 517
Score = 37.0 bits (84), Expect(6) = 7e-44
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL*W 974
LHMVFID EKAY+++PR+ + W
Sbjct: 441 LHMVFIDLEKAYDKVPRSVMWW 462
Score = 30.8 bits (68), Expect(6) = 7e-44
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 1791 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
L W V+RD+ E +I + LA+D K W I +PE
Sbjct: 755 LTWTDAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 789
Score = 28.9 bits (63), Expect(6) = 7e-44
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 574 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 612
>AQK94585.1 Nuclear pore complex protein NUP205 [Zea mays] AQK94592.1 Nuclear
pore complex protein NUP205 [Zea mays] AQK94593.1 Nuclear
pore complex protein NUP205 [Zea mays] AQK94596.1 Nuclear
pore complex protein NUP205 [Zea mays] AQK94599.1 Nuclear
pore complex protein NUP205 [Zea mays]
Length = 331
Score = 84.7 bits (208), Expect(5) = 2e-38
Identities = 37/62 (59%), Positives = 49/62 (79%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LV+D + +DIQ ++PW MLF DD++LI+E + GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 55 LFALVIDVVTRDIQGDIPWCMLFADDVVLIEEIRSGVSQKLELWRQTLEAKGFRLSRSKT 114
Query: 1310 VF 1315
+
Sbjct: 115 EY 116
Score = 53.5 bits (127), Expect(5) = 2e-38
Identities = 26/55 (47%), Positives = 35/55 (63%)
Frame = +1
Query: 976 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 1140
A EK K S KY+++I++MY T V+T DG + D PI I +HQGS L+ F L
Sbjct: 4 ALEKHKASTKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFAL 58
Score = 52.0 bits (123), Expect(5) = 2e-38
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 1645
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 188 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIRER 246
Query: 1646 VGVAPIEVKISEHR 1687
VGV PIE K+ +HR
Sbjct: 247 VGVTPIEEKLMQHR 260
Score = 31.6 bits (70), Expect(5) = 2e-38
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 1791 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 296 LTWTEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 330
Score = 28.9 bits (63), Expect(5) = 2e-38
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 115 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 153
>AQK78972.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 634
Score = 87.4 bits (215), Expect(5) = 5e-38
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LVMDE+ +DIQ ++PW MLF DD++L+DE++ GVN LE+WR T E+KGFRLSR KT
Sbjct: 381 LFALVMDEVTRDIQRDIPWCMLFADDVVLVDESRAGVNRKLELWRHTLESKGFRLSRIKT 440
Query: 1310 VF 1315
+
Sbjct: 441 EY 442
Score = 54.7 bits (130), Expect(5) = 5e-38
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = +1
Query: 976 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 1140
A EK K KY+ +I++MY A T V+TCDG ++D PI + +HQGS L+ F L
Sbjct: 330 ALEKHKAPTKYITLIKDMYKDAMTFVRTCDGDTNDFPIKVGLHQGSALSPYLFAL 384
Score = 50.1 bits (118), Expect(5) = 5e-38
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 1645
LKGKFYR T+ +ML AE C TK++HV ++ + G + ++N DI+ +
Sbjct: 514 LKGKFYRTTICPSMLYGAE-CWPTKRRHVQQLSVAEMRMLRWFCGHTRRDRVQNKDIRDR 572
Query: 1646 VGVAPIEVKISEHR 1687
VGVAPIE K+ +HR
Sbjct: 573 VGVAPIEEKLIQHR 586
Score = 32.7 bits (73), Expect(5) = 5e-38
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL*W 974
LHMVF D EKAY+++ RN + W
Sbjct: 308 LHMVFSDLEKAYDKVLRNVMWW 329
Score = 24.3 bits (51), Expect(5) = 5e-38
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 1380 VPKKYVFRYLGSISQK 1427
V KK FRYLGS+ QK
Sbjct: 464 VTKKDTFRYLGSMLQK 479
>OIT28878.1 dead-box atp-dependent rna helicase 32 [Nicotiana attenuata]
Length = 1094
Score = 84.7 bits (208), Expect(5) = 2e-34
Identities = 40/63 (63%), Positives = 49/63 (77%)
Frame = +2
Query: 1127 LLFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSK 1306
LLF LVMD I IQ +VPW MLF DDI+LIDET+ G N+ LE+WR T E+KGF+LSR+K
Sbjct: 227 LLFALVMDAITCHIQGDVPWCMLFADDIVLIDETRVGGNERLEVWRQTLESKGFKLSRAK 286
Query: 1307 TVF 1315
T +
Sbjct: 287 TEY 289
Score = 47.0 bits (110), Expect(5) = 2e-34
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 982 EKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 1140
E K V Y+ VI++MYDGA T V+T G S P+ + +HQG L+ + F L
Sbjct: 179 EAKSVPEAYIRVIKDMYDGAKTRVRTVGGDSDHFPVVMGLHQGFALSPLLFAL 231
Score = 42.7 bits (99), Expect(5) = 2e-34
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGIQGW--IRNVDIQKK 1645
LKGK YR +R ML AE C K HV +M + G+ IRN I++K
Sbjct: 362 LKGKSYRAVVRPAMLYGAE-CWPVKNSHVQRMKVAEMRMLRWMCGLTRLDKIRNEVIREK 420
Query: 1646 VGVAPIEVKISEHR 1687
VGVAP++ K+ E R
Sbjct: 421 VGVAPVDEKMREAR 434
Score = 34.7 bits (78), Expect(5) = 2e-34
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL 968
LHMVFID EKAY+++PR L
Sbjct: 155 LHMVFIDLEKAYDKVPREVL 174
Score = 27.3 bits (59), Expect(5) = 2e-34
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQ 1424
+YL+CKF + + K+ FRYLGS+ Q
Sbjct: 288 EYLECKFSAEPSEVGRDVKLGSKVIAKRDNFRYLGSVIQ 326
>ONM31803.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 474
Score = 80.1 bits (196), Expect(5) = 4e-34
Identities = 35/62 (56%), Positives = 52/62 (83%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF L++DEI +DIQ+++PW MLF DD++L+DE++EGV LE+WR T E+KGFR+SR++T
Sbjct: 198 LFALLIDEITRDIQEDIPWCMLFADDVVLVDESREGVYIKLELWR-TLESKGFRISRTET 256
Query: 1310 VF 1315
+
Sbjct: 257 KY 258
Score = 51.2 bits (121), Expect(5) = 4e-34
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +2
Query: 1466 KPLKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGIQGW--IRNVDIQ 1639
K LK KFYRVT+R ML E E C TK++H+ ++ + G +RN DI+
Sbjct: 328 KKLKDKFYRVTIRPVMLYEVE-CWTTKRRHIQQLSVAEMRMLRWICGHTRLDRVRNDDIR 386
Query: 1640 KKVGVAPIEVKISEHRFGL 1696
++ VAPIE K+ +HR L
Sbjct: 387 DRLVVAPIEEKLIQHRLRL 405
Score = 43.5 bits (101), Expect(5) = 4e-34
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +1
Query: 982 EKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 1140
+K V KYV +I+++YD T V+T D ++ PI I +HQGS L+ F L
Sbjct: 149 DKHNVLTKYVTLIKDIYDKVVTSVRTTDSDTNVFPINIGLHQGSALSPYLFAL 201
Score = 38.5 bits (88), Expect(5) = 4e-34
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL*W 974
+HMVFID EK YN++PRN + W
Sbjct: 125 MHMVFIDLEKTYNKIPRNLMWW 146
Score = 22.3 bits (46), Expect(5) = 4e-34
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3
Query: 1380 VPKKYVFRYLG 1412
VPKK FRYLG
Sbjct: 280 VPKKDTFRYLG 290
>CBL94163.1 putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus
domestica]
Length = 622
Score = 80.1 bits (196), Expect(6) = 4e-33
Identities = 38/62 (61%), Positives = 46/62 (74%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LVMDE+ IQD++PW MLF DI+LIDET+EGVN L +WR E+KG LSRSKT
Sbjct: 375 LFALVMDELTGHIQDDIPWCMLFAYDIVLIDETQEGVNAKLNLWREVLESKGLCLSRSKT 434
Query: 1310 VF 1315
+
Sbjct: 435 EY 436
Score = 50.8 bits (120), Expect(6) = 4e-33
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +1
Query: 982 EKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 1140
EKK V Y+ I++MY+GA T V+T +G + PIT+ +HQGS L+ F L
Sbjct: 326 EKKGVRVAYIQAIKDMYEGAKTAVRTYEGQTESFPITVGLHQGSSLSPYLFAL 378
Score = 33.1 bits (74), Expect(6) = 4e-33
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y++CKF + E+PK FRYLGSI QK
Sbjct: 435 EYMECKFSANGSQNELGVRIGDQEIPKSDRFRYLGSILQK 474
Score = 32.0 bits (71), Expect(6) = 4e-33
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL 968
LHMVFID EKAY+R+ R+ +
Sbjct: 302 LHMVFIDLEKAYDRVSRDII 321
Score = 30.4 bits (67), Expect(6) = 4e-33
Identities = 26/71 (36%), Positives = 30/71 (42%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGIQGWIRNVDIQKKVG 1651
LKGKFYR +R ML K K IRN DI+ KVG
Sbjct: 509 LKGKFYRTAIRPAML---------KDK----------------------IRNEDIRGKVG 537
Query: 1652 VAPIEVKISEH 1684
VA IE K+ E+
Sbjct: 538 VAEIEGKMREN 548
Score = 25.0 bits (53), Expect(6) = 4e-33
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 1690 WFGHPQRRLVDASV 1731
WFGH QRR DA +
Sbjct: 552 WFGHVQRRPTDAPI 565
>AAT40504.2 Polyprotein, putative [Solanum demissum]
Length = 868
Score = 87.8 bits (216), Expect(5) = 7e-32
Identities = 40/62 (64%), Positives = 50/62 (80%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LVMDE+ + IQ+ VPW MLF DDI+LIDET++ VN LE+WR T E+KGFRLSR+KT
Sbjct: 415 LFALVMDELTRSIQETVPWCMLFADDIVLIDETRDRVNARLEVWRQTLESKGFRLSRTKT 474
Query: 1310 VF 1315
+
Sbjct: 475 EY 476
Score = 40.4 bits (93), Expect(5) = 7e-32
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +1
Query: 1021 RNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 1140
++MYDGA T V+T G S P+ I +HQGSVL+ F L
Sbjct: 379 KDMYDGAKTRVRTVGGDSEHFPVEIGLHQGSVLSPFLFAL 418
Score = 40.4 bits (93), Expect(5) = 7e-32
Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVG--IQGWIRNVDIQKK 1645
LKGKFYRV +R +L AE C K HV KM + G IRN I++K
Sbjct: 549 LKGKFYRVVVRPALLYGAE-CWPVKNAHVHKMHVAEMRMLRWMCGHTRSDKIRNEVIREK 607
Query: 1646 VGVAPIEVKISEHR 1687
VGVA + K+ E R
Sbjct: 608 VGVASVVDKLREAR 621
Score = 30.8 bits (68), Expect(5) = 7e-32
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQ 1424
+YL CKF + +PKK FRYLG++ Q
Sbjct: 475 EYLGCKFSDGLDETDVEVRLAAQVIPKKESFRYLGAVIQ 513
Score = 28.5 bits (62), Expect(5) = 7e-32
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 1797 WEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
WE+ +++D+ I E + LD KEW I++ +
Sbjct: 659 WEEVIRQDLAMLHITEDMTLDRKEWRSRIKVED 691
>OIT39959.1 histone deacetylase 14 [Nicotiana attenuata]
Length = 763
Score = 87.0 bits (214), Expect(4) = 1e-31
Identities = 39/62 (62%), Positives = 50/62 (80%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LVMD + I+ +VPW MLF DDI+LIDET++GVN+ LE+WR T E+KGF+LSRSKT
Sbjct: 156 LFALVMDALTHHIRGDVPWCMLFADDIVLIDETRDGVNERLEVWRQTLESKGFKLSRSKT 215
Query: 1310 VF 1315
+
Sbjct: 216 EY 217
Score = 50.8 bits (120), Expect(4) = 1e-31
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGI-LRREY*GRCVGIQ-GWIRNVDIQKK 1645
LKGKFYR +RL ML AE C K H+ +M + + R C + IRN DI+KK
Sbjct: 290 LKGKFYRAVVRLAMLYGAE-CWPVKNSHIQRMKVAVMRMLRWMCGHTKIDKIRNEDIRKK 348
Query: 1646 VGVAPIEVKISEHR 1687
VGVAP++ K+ E R
Sbjct: 349 VGVAPVDDKMREAR 362
Score = 44.7 bits (104), Expect(4) = 1e-31
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +1
Query: 982 EKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 1140
E K V Y+ I++MYDGA T V+T G S P+ + +HQGS L+ F L
Sbjct: 107 EAKGVLVAYIRAIKDMYDGAKTKVRTVGGDSEHFPVVMGLHQGSALSPFLFAL 159
Score = 25.4 bits (54), Expect(4) = 1e-31
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQKGR 1433
+YL+ KF + +PK+ F+YLGS+ Q R
Sbjct: 216 EYLEYKFSVESREVGRDVRLGSQVIPKRDSFKYLGSMIQGDR 257
>AQK66479.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 759
Score = 92.0 bits (227), Expect(4) = 8e-31
Identities = 42/73 (57%), Positives = 58/73 (79%)
Frame = +2
Query: 1097 EYIKGQC*PILLFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSE 1276
+YIKG+ P L F LV+D++ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T E
Sbjct: 473 DYIKGRLSPYL-FALVIDKVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLE 531
Query: 1277 AKGFRLSRSKTVF 1315
AKGFRLSRSKT +
Sbjct: 532 AKGFRLSRSKTKY 544
Score = 52.4 bits (124), Expect(4) = 8e-31
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 1645
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 616 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 674
Query: 1646 VGVAPIEVKISEHR 1687
VGVAPIE K+ +HR
Sbjct: 675 VGVAPIEEKLMQHR 688
Score = 32.0 bits (71), Expect(4) = 8e-31
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 1791 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 724 LTWTEAVKRDLKEWNIDKELAMDRKGWKCAIHVPE 758
Score = 28.5 bits (62), Expect(4) = 8e-31
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 543 KYMKCDFSATGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 581
>AQK84025.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 88.2 bits (217), Expect(4) = 2e-30
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 1310 VF 1315
+
Sbjct: 800 EY 801
Score = 54.3 bits (129), Expect(4) = 2e-30
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 1645
LKGKFYR T+R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 873 LKGKFYRTTIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 931
Query: 1646 VGVAPIEVKISEHR 1687
VGVAPIE K+ +HR
Sbjct: 932 VGVAPIEEKLMQHR 945
Score = 32.0 bits (71), Expect(4) = 2e-30
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 1791 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 981 LTWTEAVKRDLKEWNIDKELAMDRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 2e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSATGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
Score = 54.3 bits (129), Expect(2) = 5e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +1
Query: 976 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWLSYGRD 1155
A EK KV+ KY+++I++MY T V+T DG + D PI I +HQGS L+ F L
Sbjct: 689 ALEKHKVATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEV 748
Query: 1156 TERYSG 1173
T G
Sbjct: 749 TRDIQG 754
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL*W 974
LHMVFID EKAY+++PR+ + W
Sbjct: 667 LHMVFIDLEKAYDKVPRSVMWW 688
>AQL03708.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 89.7 bits (221), Expect(4) = 3e-30
Identities = 39/62 (62%), Positives = 51/62 (82%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LVMDE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVMDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 1310 VF 1315
+
Sbjct: 800 EY 801
Score = 52.4 bits (124), Expect(4) = 3e-30
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 1645
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 873 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 931
Query: 1646 VGVAPIEVKISEHR 1687
VGVAPIE K+ +HR
Sbjct: 932 VGVAPIEEKLMQHR 945
Score = 32.0 bits (71), Expect(4) = 3e-30
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 1791 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 981 LTWSEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 3e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMRYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
Score = 54.3 bits (129), Expect(2) = 5e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +1
Query: 976 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWLSYGRD 1155
A EK KV+ KY+++I++MY T V+T DG + D PI I +HQGS L+ F L
Sbjct: 689 ALEKHKVATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVMDEV 748
Query: 1156 TERYSG 1173
T G
Sbjct: 749 TRDIQG 754
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL*W 974
LHMVFID EKAY+++PR+ + W
Sbjct: 667 LHMVFIDLEKAYDKVPRSVMWW 688
>XP_009622333.1 PREDICTED: uncharacterized protein LOC104113756 [Nicotiana
tomentosiformis]
Length = 265
Score = 83.6 bits (205), Expect(6) = 3e-30
Identities = 38/62 (61%), Positives = 49/62 (79%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF L ++ + + IQ EVPW MLF DDI+LIDET++GVN LE+WR T E+KGF+LSRSKT
Sbjct: 72 LFALELEVLTRHIQGEVPWCMLFADDIVLIDETRDGVNVKLEVWRETLESKGFKLSRSKT 131
Query: 1310 VF 1315
+
Sbjct: 132 KY 133
Score = 43.9 bits (102), Expect(6) = 3e-30
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +1
Query: 1006 YVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWL 1140
Y+ VI++MY+GA T V+T +G S P+ + +HQGS L+ F L
Sbjct: 31 YIRVIKDMYEGAKTRVRTAEGDSDHFPVEMGLHQGSALSPFLFAL 75
Score = 31.2 bits (69), Expect(6) = 3e-30
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQ 1424
+YL+CKF + VPKK F+YLGSI Q
Sbjct: 132 KYLECKFRDWMHEEGVEVKIGTQVVPKKNSFKYLGSIIQ 170
Score = 29.6 bits (65), Expect(6) = 3e-30
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 915 MVFIDFEKAYNRLPRNAL 968
MVFID EKAY++ PR L
Sbjct: 1 MVFIDLEKAYDKFPREVL 18
Score = 27.7 bits (60), Expect(6) = 3e-30
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKM 1567
LKGKFYRV +R +L AE KK H+ K+
Sbjct: 206 LKGKFYRVVVRPAILYWAE-SWPVKKSHIQKI 236
Score = 25.4 bits (54), Expect(6) = 3e-30
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 1576 EKRILR*MCGYTRLD 1620
E RILR MCG+TR D
Sbjct: 240 EMRILRWMCGHTRKD 254
>AQK78701.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 89.7 bits (221), Expect(4) = 4e-30
Identities = 39/62 (62%), Positives = 51/62 (82%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LV+DE+ +DIQ ++PW MLF DD++LIDE++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGDIPWCMLFADDVVLIDESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 1310 VF 1315
+
Sbjct: 800 EY 801
Score = 52.4 bits (124), Expect(4) = 4e-30
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 1645
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 873 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMWRWICGHTRRDRVRNDDIRER 931
Query: 1646 VGVAPIEVKISEHR 1687
VGVAPIE K+ +HR
Sbjct: 932 VGVAPIEEKLMQHR 945
Score = 31.6 bits (70), Expect(4) = 4e-30
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 1791 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
L W + V+RD+ E DI + LA+D K W +PE
Sbjct: 981 LTWTEAVKRDLKEWDIDKELAVDRKGWKCATHVPE 1015
Score = 28.9 bits (63), Expect(4) = 4e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
Score = 54.3 bits (129), Expect(2) = 5e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +1
Query: 976 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWLSYGRD 1155
A EK KV+ KY+++I++MY T V+T DG + D PI I +HQGS L+ F L
Sbjct: 689 ALEKHKVATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEV 748
Query: 1156 TERYSG 1173
T G
Sbjct: 749 TRDIQG 754
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL*W 974
LHMVFID EKAY+++PR+ + W
Sbjct: 667 LHMVFIDLEKAYDKVPRSVMWW 688
>AQK92036.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 85.9 bits (211), Expect(4) = 5e-30
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LV+DE+ +DIQ +PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGVLPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 1310 VF 1315
+
Sbjct: 800 EY 801
Score = 56.6 bits (135), Expect(4) = 5e-30
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Frame = +2
Query: 1454 T*LEKPLKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRN 1627
T + + LKGKFYR +R ML AE C TK++HV ++G+ G + +RN
Sbjct: 867 TRVPRKLKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLGVAEMRMLRWICGHTRRDRVRN 925
Query: 1628 VDIQKKVGVAPIEVKISEHR 1687
DI+++VGVAPIE K+ +HR
Sbjct: 926 DDIRERVGVAPIEEKLMQHR 945
Score = 30.8 bits (68), Expect(4) = 5e-30
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 1791 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
L W + V+RD+ E +I + LA D K W I +PE
Sbjct: 981 LTWTEAVKRDLKEWNIDKELAADRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 5e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
Score = 54.3 bits (129), Expect(2) = 5e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +1
Query: 976 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWLSYGRD 1155
A EK KV+ KY+++I++MY T V+T DG + D PI I +HQGS L+ F L
Sbjct: 689 ALEKHKVATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEV 748
Query: 1156 TERYSG 1173
T G
Sbjct: 749 TRDIQG 754
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL*W 974
LHMVFID EKAY+++PR+ + W
Sbjct: 667 LHMVFIDLEKAYDKVPRSVMWW 688
>ONM03863.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 85.9 bits (211), Expect(4) = 8e-30
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LV+DE+ +DIQ +PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGVLPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 1310 VF 1315
+
Sbjct: 800 EY 801
Score = 55.8 bits (133), Expect(4) = 8e-30
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Frame = +2
Query: 1466 KPLKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQ 1639
+ LKGKFYR T+R ML AE C TK++HV ++ + G + +RN DI+
Sbjct: 871 RKLKGKFYRTTIRPAMLYGAE-CWPTKRRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIR 929
Query: 1640 KKVGVAPIEVKISEHR 1687
++VGVAPIE K+ +HR
Sbjct: 930 ERVGVAPIEEKLMQHR 945
Score = 30.8 bits (68), Expect(4) = 8e-30
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 1791 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
L W + V+RD+ E +I + LA D K W I +PE
Sbjct: 981 LTWTEAVKRDLKEWNIDKELAADRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 8e-30
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
Score = 54.3 bits (129), Expect(2) = 5e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +1
Query: 976 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWLSYGRD 1155
A EK KV+ KY+++I++MY T V+T DG + D PI I +HQGS L+ F L
Sbjct: 689 ALEKHKVATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEV 748
Query: 1156 TERYSG 1173
T G
Sbjct: 749 TRDIQG 754
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL*W 974
LHMVFID EKAY+++PR+ + W
Sbjct: 667 LHMVFIDLEKAYDKVPRSVMWW 688
>ONM52836.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 88.2 bits (217), Expect(4) = 1e-29
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 1310 VF 1315
+
Sbjct: 800 EY 801
Score = 52.4 bits (124), Expect(4) = 1e-29
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 1645
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 873 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 931
Query: 1646 VGVAPIEVKISEHR 1687
VGVAPIE K+ +HR
Sbjct: 932 VGVAPIEEKLMQHR 945
Score = 31.6 bits (70), Expect(4) = 1e-29
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 1791 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 981 LTWTEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 1e-29
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
Score = 54.3 bits (129), Expect(2) = 5e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +1
Query: 976 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWLSYGRD 1155
A EK KV+ KY+++I++MY T V+T DG + D PI I +HQGS L+ F L
Sbjct: 689 ALEKHKVATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEV 748
Query: 1156 TERYSG 1173
T G
Sbjct: 749 TRDIQG 754
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL*W 974
LHMVFID EKAY+++PR+ + W
Sbjct: 667 LHMVFIDLEKAYDKVPRSVMWW 688
>ONM32720.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 88.2 bits (217), Expect(4) = 1e-29
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 1310 VF 1315
+
Sbjct: 800 EY 801
Score = 52.4 bits (124), Expect(4) = 1e-29
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 1645
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 873 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVTEMRMLRWICGHTRRDRVRNDDIRER 931
Query: 1646 VGVAPIEVKISEHR 1687
VGVAPIE K+ +HR
Sbjct: 932 VGVAPIEEKLMQHR 945
Score = 31.6 bits (70), Expect(4) = 1e-29
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 1791 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 981 LTWTEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 1e-29
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
Score = 54.3 bits (129), Expect(2) = 5e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +1
Query: 976 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWLSYGRD 1155
A EK KV+ KY+++I++MY T V+T DG + D PI I +HQGS L+ F L
Sbjct: 689 ALEKHKVATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEV 748
Query: 1156 TERYSG 1173
T G
Sbjct: 749 TRDIQG 754
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL*W 974
LHMVFID EKAY+++PR+ + W
Sbjct: 667 LHMVFIDLEKAYDKVPRSVMWW 688
>ONM06616.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 88.2 bits (217), Expect(4) = 1e-29
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 740 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 799
Query: 1310 VF 1315
+
Sbjct: 800 EY 801
Score = 52.4 bits (124), Expect(4) = 1e-29
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 1645
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 873 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 931
Query: 1646 VGVAPIEVKISEHR 1687
VGVAPIE K+ +HR
Sbjct: 932 VGVAPIEEKLMQHR 945
Score = 31.6 bits (70), Expect(4) = 1e-29
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 1791 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 981 LTWTEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 1015
Score = 28.9 bits (63), Expect(4) = 1e-29
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 800 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 838
Score = 54.3 bits (129), Expect(2) = 5e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +1
Query: 976 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWLSYGRD 1155
A EK KV+ KY+++I++MY T V+T DG + D PI I +HQGS L+ F L
Sbjct: 689 ALEKHKVATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEV 748
Query: 1156 TERYSG 1173
T G
Sbjct: 749 TRDIQG 754
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL*W 974
LHMVFID EKAY+++PR+ + W
Sbjct: 667 LHMVFIDLEKAYDKVPRSVMWW 688
>ONM29620.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 934
Score = 88.2 bits (217), Expect(4) = 1e-29
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 658 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 717
Query: 1310 VF 1315
+
Sbjct: 718 EY 719
Score = 52.4 bits (124), Expect(4) = 1e-29
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 1645
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 791 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 849
Query: 1646 VGVAPIEVKISEHR 1687
VGVAPIE K+ +HR
Sbjct: 850 VGVAPIEEKLMQHR 863
Score = 31.6 bits (70), Expect(4) = 1e-29
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 1791 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 899 LTWTEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 933
Score = 28.9 bits (63), Expect(4) = 1e-29
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 718 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 756
Score = 54.3 bits (129), Expect(2) = 5e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +1
Query: 976 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWLSYGRD 1155
A EK KV+ KY+++I++MY T V+T DG + D PI I +HQGS L+ F L
Sbjct: 607 ALEKHKVATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEV 666
Query: 1156 TERYSG 1173
T G
Sbjct: 667 TRDIQG 672
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL*W 974
LHMVFID EKAY+++PR+ + W
Sbjct: 585 LHMVFIDLEKAYDKVPRSVMWW 606
>AQK46390.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 557
Score = 88.2 bits (217), Expect(4) = 1e-29
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 1130 LFGLVMDEILKDIQDEVPWFMLFTDDILLIDETKEGVNDTLEIWRSTSEAKGFRLSRSKT 1309
LF LV+DE+ +DIQ ++PW MLF DD++LI+E++ GV+ LE+WR T EAKGFRLSRSKT
Sbjct: 281 LFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKT 340
Query: 1310 VF 1315
+
Sbjct: 341 EY 342
Score = 52.4 bits (124), Expect(4) = 1e-29
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 1472 LKGKFYRVTMRLTML*EAE*C*ATKKKHVPKMGILRREY*GRCVGI--QGWIRNVDIQKK 1645
LKGKFYR +R ML AE C TK++HV ++ + G + +RN DI+++
Sbjct: 414 LKGKFYRTAIRPAMLYGAE-CWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRER 472
Query: 1646 VGVAPIEVKISEHR 1687
VGVAPIE K+ +HR
Sbjct: 473 VGVAPIEEKLMQHR 486
Score = 31.6 bits (70), Expect(4) = 1e-29
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 1791 LNWEKFVQRDM*ERDIIETLALDMKEWGRLIRMPE 1895
L W + V+RD+ E +I + LA+D K W I +PE
Sbjct: 522 LTWTEAVKRDLKEWNIDKELAVDRKGWKCAIHVPE 556
Score = 28.9 bits (63), Expect(4) = 1e-29
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 1308 QYLKCKFXXXXXXXXXXXNMTRLEVPKKYVFRYLGSISQK 1427
+Y+KC F ++ VPKK FRYLGS+ QK
Sbjct: 341 EYMKCDFSAMGYEDGDV-SLDGQVVPKKDTFRYLGSMLQK 379
Score = 54.3 bits (129), Expect(2) = 5e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +1
Query: 976 ASEKKKVSRKYVDVIRNMYDGATTCVKTCDGMSSDLPITI*VHQGSVLAHITFWLSYGRD 1155
A EK KV+ KY+++I++MY T V+T DG + D PI I +HQGS L+ F L
Sbjct: 230 ALEKHKVATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEV 289
Query: 1156 TERYSG 1173
T G
Sbjct: 290 TRDIQG 295
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 909 LHMVFIDFEKAYNRLPRNAL*W 974
LHMVFID EKAY+++PR+ + W
Sbjct: 208 LHMVFIDLEKAYDKVPRSVMWW 229