BLASTX nr result
ID: Panax24_contig00028507
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00028507
(561 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A05190 hypothetical protein 77 - common tobacco chloroplast... 120 2e-32
ERN02875.1 hypothetical protein AMTR_s00334p00015220 [Amborella ... 112 3e-29
OIW17041.1 hypothetical protein TanjilG_00183 [Lupinus angustifo... 108 5e-28
XP_003620942.1 photosystem I assembly protein ycf3 [Medicago tru... 108 5e-28
XP_003599571.2 photosystem I assembly protein ycf3 [Medicago tru... 105 1e-26
EPS73911.1 hypothetical protein M569_00846 [Genlisea aurea] 85 1e-17
YP_009170428.1 hypothetical chloroplast RF34 (chloroplast) [Humu... 85 2e-17
YP_009170069.1 hypothetical chloroplast RF34 (chloroplast) [Larr... 84 3e-17
XP_016652512.1 PREDICTED: photosystem I assembly protein Ycf3 [P... 84 5e-17
YP_006503792.1 photosystem I assembly protein Ycf3 (chloroplast)... 84 6e-17
YP_086967.1 photosystem I assembly protein Ycf3 [Panax ginseng] ... 83 1e-16
YP_008814857.1 hypothetical chloroplast RF21 (chloroplast) [Aral... 83 1e-16
ADK89694.1 hypothetical chloroplast RF34 (chloroplast) [Hydrocot... 83 1e-16
YP_009241053.1 photosystem I assembly protein Ycf3 (chloroplast)... 83 1e-16
AIP85231.1 Ycf3 (chloroplast) [Camellia sinensis] 81 2e-16
YP_009331698.1 Ycf3 (chloroplast) [Arracacia xanthorrhiza] AFU96... 81 2e-16
ABU85542.1 photosystem I assembly protein ycf3, partial (chlorop... 81 2e-16
XP_013443688.1 30S ribosomal protein S4, putative [Medicago trun... 86 2e-16
YP_009162878.1 photosystem I assembly protein ycf3 (chloroplast)... 81 2e-16
YP_003359360.2 photosystem I assembly protein Ycf3 (chloroplast)... 82 2e-16
>pir||A05190 hypothetical protein 77 - common tobacco chloroplast prf||1211235AD
ORF 77
Length = 77
Score = 120 bits (301), Expect = 2e-32
Identities = 63/75 (84%), Positives = 66/75 (88%)
Frame = -3
Query: 559 FNIITRSKRHSLFPILSGLIEPSLRYFRISLSNGLFSPVGIGESIPSLRTVLESFLPHTA 380
FNIIT SKR+SLFPILSGLIEPSL FRISL NGLFSP GIG SIPSLRTVLE+FLPHTA
Sbjct: 3 FNIITGSKRYSLFPILSGLIEPSLCNFRISLLNGLFSPAGIGSSIPSLRTVLENFLPHTA 62
Query: 379 QQSILLVSPILIYHI 335
QQSILLVS +YHI
Sbjct: 63 QQSILLVSHFDLYHI 77
>ERN02875.1 hypothetical protein AMTR_s00334p00015220 [Amborella trichopoda]
Length = 70
Score = 112 bits (279), Expect = 3e-29
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +2
Query: 386 MR*ETLKYGSKGRN*LAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
MR ETLKYGSKGRN AYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQA+ALTPGNYIE
Sbjct: 1 MRSETLKYGSKGRNLSAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQALALTPGNYIE 58
>OIW17041.1 hypothetical protein TanjilG_00183 [Lupinus angustifolius]
Length = 70
Score = 108 bits (271), Expect = 5e-28
Identities = 53/58 (91%), Positives = 54/58 (93%)
Frame = +2
Query: 386 MR*ETLKYGSKGRN*LAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
MR ETLKYGSKGRN L YSDRGEQAIRQG SEIAEAWFDQAAEYWKQA+ALTPGNYIE
Sbjct: 1 MRQETLKYGSKGRNLLTYSDRGEQAIRQGYSEIAEAWFDQAAEYWKQAIALTPGNYIE 58
>XP_003620942.1 photosystem I assembly protein ycf3 [Medicago truncatula]
AES77160.1 photosystem I assembly protein ycf3 [Medicago
truncatula]
Length = 70
Score = 108 bits (271), Expect = 5e-28
Identities = 51/55 (92%), Positives = 53/55 (96%)
Frame = +2
Query: 395 ETLKYGSKGRN*LAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
ETLKYGSKGRN L YSDRGEQAIRQGDSEIAE+WFDQAAEYWKQA+ALTPGNYIE
Sbjct: 4 ETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIE 58
>XP_003599571.2 photosystem I assembly protein ycf3 [Medicago truncatula]
AES69822.2 photosystem I assembly protein ycf3 [Medicago
truncatula]
Length = 70
Score = 105 bits (262), Expect = 1e-26
Identities = 50/55 (90%), Positives = 52/55 (94%)
Frame = +2
Query: 395 ETLKYGSKGRN*LAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
ETLKYGSKGRN L SDRGEQAIRQGDSEIAE+WFDQAAEYWKQA+ALTPGNYIE
Sbjct: 4 ETLKYGSKGRNLLTNSDRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIE 58
>EPS73911.1 hypothetical protein M569_00846 [Genlisea aurea]
Length = 163
Score = 85.1 bits (209), Expect = 1e-17
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +2
Query: 437 YSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
YSDRGEQAIRQGDSEIAE WFDQAA+YWKQA+ALTPGNYIE
Sbjct: 111 YSDRGEQAIRQGDSEIAEVWFDQAAQYWKQAIALTPGNYIE 151
>YP_009170428.1 hypothetical chloroplast RF34 (chloroplast) [Humulus lupulus]
ALE29425.1 hypothetical chloroplast RF34 (chloroplast)
[Humulus lupulus]
Length = 169
Score = 84.7 bits (208), Expect = 2e-17
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = +2
Query: 431 LAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
+ + DRGEQAIRQGDSEIAEAWFDQAAEYWKQA+ALTPGNYIE
Sbjct: 115 ICHYDRGEQAIRQGDSEIAEAWFDQAAEYWKQALALTPGNYIE 157
>YP_009170069.1 hypothetical chloroplast RF34 (chloroplast) [Larrea tridentata]
ALE28859.1 hypothetical chloroplast RF34 (chloroplast)
[Larrea tridentata]
Length = 169
Score = 84.3 bits (207), Expect = 3e-17
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = +2
Query: 431 LAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
+ + DRGEQAIRQGDSEIAEAWFDQAAEYWKQA+ALTPGNYIE
Sbjct: 115 ICHYDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 157
>XP_016652512.1 PREDICTED: photosystem I assembly protein Ycf3 [Prunus mume]
Length = 177
Score = 84.0 bits (206), Expect = 5e-17
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = +2
Query: 419 GRN*LAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
GR+ YSDRGEQA++QG SEIAEAWFDQAAEYWKQA+ALTPGNYIE
Sbjct: 119 GRDLPPYSDRGEQAVQQGYSEIAEAWFDQAAEYWKQAIALTPGNYIE 165
>YP_006503792.1 photosystem I assembly protein Ycf3 (chloroplast) [Datura
stramonium] AEQ36939.1 photosystem I assembly protein
Ycf3 (chloroplast) [Datura stramonium] AEQ37090.1
photosystem I assembly protein Ycf3 (chloroplast)
[Datura stramonium]
Length = 170
Score = 83.6 bits (205), Expect = 6e-17
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +2
Query: 437 YSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
YS RGEQAI+QGDSEIAEAWFDQAAEYWKQA+ALTPGNYIE
Sbjct: 118 YSGRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 158
>YP_086967.1 photosystem I assembly protein Ycf3 [Panax ginseng] YP_004935553.1
photosystem I assembly protein Ycf3 (chloroplast)
[Eleutherococcus senticosus] YP_008814944.1 hypothetical
chloroplast RF34 (chloroplast) [Brassaiopsis hainla]
YP_008815031.1 hypothetical chloroplast RF34
(chloroplast) [Metapanax delavayi] YP_008815118.1
hypothetical chloroplast RF34 (chloroplast) [Schefflera
delavayi] YP_008815205.1 hypothetical chloroplast RF34
(chloroplast) [Kalopanax septemlobus] YP_009121174.1
hypothetical chloroplast RF34 (chloroplast) [Panax
notoginseng] YP_009122726.1 photosystem I assembly
protein Ycf3 (chloroplast) [Dendropanax dentiger]
YP_009155429.1 Ycf3 (chloroplast) [Panax quinquefolius]
YP_009159539.1 Ycf3 (chloroplast) [Dendropanax morbifer]
YP_009191854.1 photosystem I assembly protein ycf3
(chloroplast) [Panax japonicus] YP_009191941.1
photosystem I assembly protein ycf3 (chloroplast) [Panax
vietnamensis] YP_009266519.1 Ycf3 (chloroplast) [Panax
stipuleanatus] Q68S05.1 RecName: Full=Photosystem I
assembly protein Ycf3 AAT98510.1 ycf3 protein
(chloroplast) [Panax ginseng] AEO92620.1 photosystem I
assembly protein Ycf3 (chloroplast) [Eleutherococcus
senticosus] AGG39044.1 hypothetical chloroplast RF34
(chloroplast) [Brassaiopsis hainla] AGG39131.1
hypothetical chloroplast RF34 (chloroplast) [Metapanax
delavayi] AGG39218.1 hypothetical chloroplast RF34
(chloroplast) [Schefflera delavayi] AGG39305.1
hypothetical chloroplast RF34 (chloroplast) [Kalopanax
septemlobus] AGM15036.1 photosystem I assembly protein
Ycf3 (chloroplast) [Panax ginseng] AGM15122.1
photosystem I assembly protein Ycf3 (chloroplast) [Panax
ginseng] AGM15208.1 photosystem I assembly protein Ycf3
(chloroplast) [Panax ginseng] AGW31968.1 photosystem I
assembly protein Ycf3 (chloroplast) [Panax ginseng]
AIA24328.1 hypothetical chloroplast RF34 (chloroplast)
[Panax notoginseng] AIX97890.1 Ycf3 (chloroplast) [Panax
ginseng] AIX97977.1 Ycf3 (chloroplast) [Panax ginseng]
AIX98060.1 Ycf3 (chloroplast) [Panax ginseng] AIX98145.1
Ycf3 (chloroplast) [Panax ginseng] AIX98230.1 Ycf3
(chloroplast) [Panax ginseng] AIX98315.1 Ycf3
(chloroplast) [Panax ginseng] AIX98400.1 Ycf3
(chloroplast) [Panax ginseng] AIX98485.1 Ycf3
(chloroplast) [Panax ginseng] AIX98570.1 Ycf3
(chloroplast) [Panax ginseng] AJC99489.1 Ycf3
(chloroplast) [Panax quinquefolius] AJC99574.1 Ycf3
(chloroplast) [Panax ginseng] AJC99659.1 Ycf3
(chloroplast) [Panax ginseng] AJK29855.1 photosystem I
assembly protein Ycf3 (chloroplast) [Dendropanax
dentiger] AKB99073.1 photosystem I assembly protein ycf3
(chloroplast) [Panax notoginseng] AKB99160.1 photosystem
I assembly protein ycf3 (chloroplast) [Panax japonicus]
AKB99247.1 photosystem I assembly protein ycf3
(chloroplast) [Panax vietnamensis] AKB99334.1
photosystem I assembly protein ycf3 (chloroplast) [Panax
vietnamensis] AKG26601.1 photosystem I assembly protein
Ycf3 (chloroplast) [Panax notoginseng] AKQ20729.1 Ycf3
(chloroplast) [Dendropanax morbifer] AKU70776.1
hypothetical chloroplast RF34 (chloroplast) [Panax
notoginseng] AKZ29747.1 hypothetical chloroplast RF34
(chloroplast) [Panax quinquefolius] AMR97450.1 Ycf3
(chloroplast) [Panax vietnamensis] ANK78331.1 Ycf3
(chloroplast) [Panax japonicus var. bipinnatifidus]
ANK78417.1 Ycf3 (chloroplast) [Panax stipuleanatus]
ANS71770.1 Ycf3 (chloroplast) [Eleutherococcus
sessiliflorus] ANS71857.1 Ycf3 (chloroplast)
[Eleutherococcus gracilistylus]
Length = 168
Score = 82.8 bits (203), Expect = 1e-16
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = +2
Query: 446 RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 156
>YP_008814857.1 hypothetical chloroplast RF21 (chloroplast) [Aralia undulata]
AGG38957.1 hypothetical chloroplast RF21 (chloroplast)
[Aralia undulata] ANS71944.1 Ycf3 (chloroplast) [Aralia
elata]
Length = 168
Score = 82.8 bits (203), Expect = 1e-16
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = +2
Query: 446 RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 156
>ADK89694.1 hypothetical chloroplast RF34 (chloroplast) [Hydrocotyle
verticillata]
Length = 168
Score = 82.8 bits (203), Expect = 1e-16
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = +2
Query: 446 RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 156
>YP_009241053.1 photosystem I assembly protein Ycf3 (chloroplast) [Schefflera
heptaphylla] AMK46185.1 photosystem I assembly protein
Ycf3 (chloroplast) [Schefflera heptaphylla]
Length = 169
Score = 82.8 bits (203), Expect = 1e-16
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = +2
Query: 446 RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 157
>AIP85231.1 Ycf3 (chloroplast) [Camellia sinensis]
Length = 126
Score = 81.3 bits (199), Expect = 2e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 446 RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
RGEQAIRQGDSEIAEAWFDQAAEYWKQA+ALTPGNYIE
Sbjct: 77 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 114
>YP_009331698.1 Ycf3 (chloroplast) [Arracacia xanthorrhiza] AFU96549.1 Ycf3,
partial (chloroplast) [Schistostemon retusum] APH07266.1
Ycf3 (chloroplast) [Arracacia xanthorrhiza]
Length = 126
Score = 81.3 bits (199), Expect = 2e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 446 RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
RGEQAIRQGDSEIAEAWFDQAAEYWKQA+ALTPGNYIE
Sbjct: 77 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 114
>ABU85542.1 photosystem I assembly protein ycf3, partial (chloroplast)
[Passiflora biflora]
Length = 126
Score = 81.3 bits (199), Expect = 2e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 446 RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
RGEQAIRQGDSEIAEAWFDQAAEYWKQA+ALTPGNYIE
Sbjct: 77 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 114
>XP_013443688.1 30S ribosomal protein S4, putative [Medicago truncatula] KEH17713.1
30S ribosomal protein S4, putative [Medicago truncatula]
Length = 336
Score = 85.5 bits (210), Expect = 2e-16
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +2
Query: 434 AYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
AYSDRGEQAI +GDSEIAEAWFDQAAEYWKQA+ALTPGNYIE
Sbjct: 281 AYSDRGEQAILEGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 322
>YP_009162878.1 photosystem I assembly protein ycf3 (chloroplast) [Rheum palmatum]
ABY79733.1 photosystem I assembly protein ycf3
(chloroplast) [Fagopyrum esculentum subsp. ancestrale]
AKT93624.1 photosystem I assembly protein ycf3
(chloroplast) [Rheum palmatum]
Length = 130
Score = 81.3 bits (199), Expect = 2e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 446 RGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
RGEQAIRQGDSEIAEAWFDQAAEYWKQA+ALTPGNYIE
Sbjct: 81 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 118
>YP_003359360.2 photosystem I assembly protein Ycf3 (chloroplast) [Olea europaea]
ADA69927.2 photosystem I assembly protein Ycf3
(chloroplast) [Olea europaea]
Length = 167
Score = 82.0 bits (201), Expect = 2e-16
Identities = 39/45 (86%), Positives = 41/45 (91%)
Frame = +2
Query: 425 N*LAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGNYIE 559
N +A RGEQAIRQGDSEIAEAWFDQAAEYWKQA+ALTPGNYIE
Sbjct: 111 NNMAVICRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 155