BLASTX nr result
ID: Panax24_contig00026012
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00026012
(1001 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_017230867.1 PREDICTED: sister chromatid cohesion protein PDS5... 158 2e-39
XP_017230868.1 PREDICTED: sister chromatid cohesion protein PDS5... 120 3e-26
KZN10893.1 hypothetical protein DCAR_003549 [Daucus carota subsp... 111 3e-23
XP_010322916.1 PREDICTED: sister chromatid cohesion protein PDS5... 72 5e-10
XP_015159156.1 PREDICTED: sister chromatid cohesion protein PDS5... 69 5e-09
XP_010664218.1 PREDICTED: sister chromatid cohesion protein PDS5... 60 4e-06
>XP_017230867.1 PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform
X1 [Daucus carota subsp. sativus]
Length = 1369
Score = 158 bits (399), Expect = 2e-39
Identities = 101/218 (46%), Positives = 125/218 (57%)
Frame = -2
Query: 1000 QNPVSSSSLPRSAGLHNEFSVDDELDGEEPRNCEPVVGNEQLPSSCDSVAMKPSVAQNED 821
++P SS + S GLHNEFS+DDELD E + EP+ GNEQL SSC SVAMKP A ED
Sbjct: 1185 RHPAPSSYIIESTGLHNEFSLDDELDKGETGSSEPLTGNEQLSSSCASVAMKPLRAHRED 1244
Query: 820 LLSSDLLHKNDTLTKCNSMIVELSKCLKINHNDVCSSKIXXXXXXXXXXXXXXEILWETT 641
LLSSD L D++TK +S+ VE SK L+ D+ +SK
Sbjct: 1245 LLSSDSLQNIDSMTKNSSLHVEPSKILQTKQTDLWNSK---------------------- 1282
Query: 640 SHGXXXXXXXXXXXXXXXXRGEHSTISSPMEIVDAFSSDASQQMQNSPQKENSYALNRKL 461
R E S +S P E+VDA+ SDASQ + N +KE++Y L++KL
Sbjct: 1283 --------DSCSLQLLHCDRQEQSFLSGPQEMVDAYGSDASQSLPNMSKKEHAY-LSKKL 1333
Query: 460 PPAVKGNKGRGASVNKSTSEVIIANQDVIARRTRRRKV 347
P AVKGNKG+ SV SEVI NQDVIA RTRRRK+
Sbjct: 1334 PVAVKGNKGQQVSVKTLASEVI--NQDVIAHRTRRRKI 1369
>XP_017230868.1 PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform
X2 [Daucus carota subsp. sativus]
Length = 1348
Score = 120 bits (300), Expect = 3e-26
Identities = 78/187 (41%), Positives = 100/187 (53%)
Frame = -2
Query: 1000 QNPVSSSSLPRSAGLHNEFSVDDELDGEEPRNCEPVVGNEQLPSSCDSVAMKPSVAQNED 821
++P SS + S GLHNEFS+DDELD E + EP+ GNEQL SSC SVAMKP A ED
Sbjct: 1185 RHPAPSSYIIESTGLHNEFSLDDELDKGETGSSEPLTGNEQLSSSCASVAMKPLRAHRED 1244
Query: 820 LLSSDLLHKNDTLTKCNSMIVELSKCLKINHNDVCSSKIXXXXXXXXXXXXXXEILWETT 641
LLSSD L D++TK +S+ VE SK L+ D+ +SK
Sbjct: 1245 LLSSDSLQNIDSMTKNSSLHVEPSKILQTKQTDLWNSK---------------------- 1282
Query: 640 SHGXXXXXXXXXXXXXXXXRGEHSTISSPMEIVDAFSSDASQQMQNSPQKENSYALNRKL 461
R E S +S P E+VDA+ SDASQ + N +KE++Y L++KL
Sbjct: 1283 --------DSCSLQLLHCDRQEQSFLSGPQEMVDAYGSDASQSLPNMSKKEHAY-LSKKL 1333
Query: 460 PPAVKGN 440
P A N
Sbjct: 1334 PVADNAN 1340
>KZN10893.1 hypothetical protein DCAR_003549 [Daucus carota subsp. sativus]
Length = 1054
Score = 111 bits (277), Expect = 3e-23
Identities = 74/189 (39%), Positives = 96/189 (50%)
Frame = -2
Query: 1000 QNPVSSSSLPRSAGLHNEFSVDDELDGEEPRNCEPVVGNEQLPSSCDSVAMKPSVAQNED 821
++P SS + S GLHNEFS+DDELD E + EP+ GNEQL SSC SVAMKP A ED
Sbjct: 919 RHPAPSSYIIESTGLHNEFSLDDELDKGETGSSEPLTGNEQLSSSCASVAMKPLRAHRED 978
Query: 820 LLSSDLLHKNDTLTKCNSMIVELSKCLKINHNDVCSSKIXXXXXXXXXXXXXXEILWETT 641
LLSSD L D++TK +S+ VE SK L+ D+ +SK
Sbjct: 979 LLSSDSLQNIDSMTKNSSLHVEPSKILQTKQTDLWNSK---------------------- 1016
Query: 640 SHGXXXXXXXXXXXXXXXXRGEHSTISSPMEIVDAFSSDASQQMQNSPQKENSYALNRKL 461
E+VDA+ SDASQ + N +KE++Y L++KL
Sbjct: 1017 ------------------------------EMVDAYGSDASQSLPNMSKKEHAY-LSKKL 1045
Query: 460 PPAVKGNKG 434
P A +G G
Sbjct: 1046 PVADQGTGG 1054
>XP_010322916.1 PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform
X3 [Solanum lycopersicum]
Length = 1409
Score = 71.6 bits (174), Expect = 5e-10
Identities = 56/204 (27%), Positives = 91/204 (44%)
Frame = -2
Query: 958 LHNEFSVDDELDGEEPRNCEPVVGNEQLPSSCDSVAMKPSVAQNEDLLSSDLLHKNDTLT 779
LH EFS+DDE + + E + EQ P ++ ++PS Q + S L +NDT++
Sbjct: 1222 LHKEFSMDDEHEDDAHGAIEADITTEQQPHCSRTLRLRPSSDQKNE--KSRSLKENDTIS 1279
Query: 778 KCNSMIVELSKCLKINHNDVCSSKIXXXXXXXXXXXXXXEILWETTSHGXXXXXXXXXXX 599
+C +++ + SK +K N +D+C SKI EI +++H
Sbjct: 1280 RCKTIMRKPSKSVKGNSSDICISKITCDSREAEVLSLDGEIWGTSSNHSLLDQGSCGL-- 1337
Query: 598 XXXXXRGEHSTISSPMEIVDAFSSDASQQMQNSPQKENSYALNRKLPPAVKGNKGRGASV 419
++ P + +D S + Q+ S E+ + K + V
Sbjct: 1338 ---------QSLCRPRKNIDMIESVSQQEDDLS---EDKAKIGSKRTALAELKNQESVLV 1385
Query: 418 NKSTSEVIIANQDVIARRTRRRKV 347
+ S SEVI N+D IARRTR R+V
Sbjct: 1386 DSSASEVIDVNEDFIARRTRSRRV 1409
>XP_015159156.1 PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform
X3 [Solanum tuberosum]
Length = 1409
Score = 68.6 bits (166), Expect = 5e-09
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 1/205 (0%)
Frame = -2
Query: 958 LHNEFSVDDELDGEEPRNCEPVVGNEQLPSSCDSVAMKP-SVAQNEDLLSSDLLHKNDTL 782
LH EFS+DDE + + E + E P ++ ++P S +NE+ S L +NDT+
Sbjct: 1222 LHKEFSMDDEHEDDAHGTIEADIRTELQPYCSRTLRLRPLSDQKNENPRS---LKENDTI 1278
Query: 781 TKCNSMIVELSKCLKINHNDVCSSKIXXXXXXXXXXXXXXEILWETTSHGXXXXXXXXXX 602
++C +++ E SK +K N +D+C SKI EI ++H
Sbjct: 1279 SRCKTIMREPSKSVKGNSSDICISKITCDSREAEVLSLDSEIWGTLSNHSLLDQDSCGL- 1337
Query: 601 XXXXXXRGEHSTISSPMEIVDAFSSDASQQMQNSPQKENSYALNRKLPPAVKGNKGRGAS 422
++ P + +D S SQQ + + ++ R +K +
Sbjct: 1338 ----------QSLCRPRKNIDMIGS-VSQQEDDLSEDKSKIGSKRTALAELKNQE--SVL 1384
Query: 421 VNKSTSEVIIANQDVIARRTRRRKV 347
V+ S SEVI N+D+IARRTR R+V
Sbjct: 1385 VDSSASEVIDVNEDLIARRTRSRRV 1409
>XP_010664218.1 PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform
X2 [Vitis vinifera] CBI19025.3 unnamed protein product,
partial [Vitis vinifera]
Length = 1450
Score = 59.7 bits (143), Expect = 4e-06
Identities = 34/76 (44%), Positives = 45/76 (59%)
Frame = -2
Query: 577 EHSTISSPMEIVDAFSSDASQQMQNSPQKENSYALNRKLPPAVKGNKGRGASVNKSTSEV 398
E S++SS E VDA DASQQ +N K + +L P +VKG G+ SV+ SEV
Sbjct: 1374 EISSLSSLKETVDAVGDDASQQHENFQNKGRTNSLYMTNPGSVKGKHGQKVSVDTLASEV 1433
Query: 397 IIANQDVIARRTRRRK 350
+ N+ + RRTRRRK
Sbjct: 1434 VNMNEIAVGRRTRRRK 1449