BLASTX nr result
ID: Panax24_contig00021167
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00021167
(727 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_017253703.1 PREDICTED: pentatricopeptide repeat-containing pr... 57 3e-09
XP_009776250.1 PREDICTED: pentatricopeptide repeat-containing pr... 62 5e-09
XP_009602545.1 PREDICTED: pentatricopeptide repeat-containing pr... 60 4e-08
XP_009602546.1 PREDICTED: pentatricopeptide repeat-containing pr... 60 4e-08
XP_012831937.1 PREDICTED: pentatricopeptide repeat-containing pr... 52 2e-07
XP_019239264.1 PREDICTED: pentatricopeptide repeat-containing pr... 57 3e-07
OIT21153.1 pentatricopeptide repeat-containing protein, chloropl... 57 3e-07
XP_016542464.1 PREDICTED: pentatricopeptide repeat-containing pr... 55 4e-06
CDP06691.1 unnamed protein product [Coffea canephora] 57 7e-06
>XP_017253703.1 PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic [Daucus carota subsp. sativus] KZM94478.1
hypothetical protein DCAR_017721 [Daucus carota subsp.
sativus]
Length = 827
Score = 56.6 bits (135), Expect(2) = 3e-09
Identities = 29/59 (49%), Positives = 37/59 (62%)
Frame = +1
Query: 466 VKPSQFVALLNSKLVSMGFVEMVEKGEIRKVVDALSGAQKLGIGSLELFGGATKEALRE 642
VK S F L+N LVS G + M+ G++ +VV LSGAQKLG+ ELF EALR+
Sbjct: 88 VKVSDFANLINVDLVSKGLIRMLRSGDVERVVQVLSGAQKLGLSVAELFDRNVVEALRK 146
Score = 33.1 bits (74), Expect(2) = 3e-09
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 639 RECCLIVKRGEVEELVDLMGILGGNLMSI 725
+EC L+ +RG VE +VDL+ +L G +S+
Sbjct: 146 KECSLVAERGNVEAVVDLLEVLSGFQLSV 174
>XP_009776250.1 PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic [Nicotiana sylvestris] XP_016463308.1
PREDICTED: pentatricopeptide repeat-containing protein
At5g02830, chloroplastic-like [Nicotiana tabacum]
Length = 857
Score = 62.0 bits (149), Expect(2) = 5e-09
Identities = 30/57 (52%), Positives = 43/57 (75%)
Frame = +1
Query: 466 VKPSQFVALLNSKLVSMGFVEMVEKGEIRKVVDALSGAQKLGIGSLELFGGATKEAL 636
V ++F ALLN+K+VS G V ++E+G+++ VV+ L+GAQKLGI L+LF GA AL
Sbjct: 104 VNAAEFAALLNAKIVSDGIVRLLEEGKLKSVVELLTGAQKLGIEPLKLFDGAAMNAL 160
Score = 26.9 bits (58), Expect(2) = 5e-09
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 633 VTRECCLIVKRGEVEELVDLMGILGGNLMSI 725
++REC ++ GE+EE+V LM L G M I
Sbjct: 160 LSRECRRTMECGEIEEVVSLMETLKGCGMPI 190
>XP_009602545.1 PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic isoform X1 [Nicotiana tomentosiformis]
XP_016469097.1 PREDICTED: pentatricopeptide
repeat-containing protein At5g02830, chloroplastic-like
isoform X1 [Nicotiana tabacum]
Length = 856
Score = 59.7 bits (143), Expect(2) = 4e-08
Identities = 29/57 (50%), Positives = 43/57 (75%)
Frame = +1
Query: 466 VKPSQFVALLNSKLVSMGFVEMVEKGEIRKVVDALSGAQKLGIGSLELFGGATKEAL 636
V ++F ALLN+K+VS G V ++E+G++R VV+ L+GAQKLGI L+L GA ++L
Sbjct: 96 VNAAEFAALLNAKIVSDGIVRLLEEGKLRSVVELLTGAQKLGIEPLKLLDGAAIDSL 152
Score = 26.2 bits (56), Expect(2) = 4e-08
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 633 VTRECCLIVKRGEVEELVDLMGILGGNLMSI 725
++REC ++ GE+EE V LM L G M I
Sbjct: 152 LSRECRRTMECGEIEEAVSLMETLKGCGMPI 182
>XP_009602546.1 PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic isoform X2 [Nicotiana tomentosiformis]
XP_016469098.1 PREDICTED: pentatricopeptide
repeat-containing protein At5g02830, chloroplastic-like
isoform X2 [Nicotiana tabacum]
Length = 849
Score = 59.7 bits (143), Expect(2) = 4e-08
Identities = 29/57 (50%), Positives = 43/57 (75%)
Frame = +1
Query: 466 VKPSQFVALLNSKLVSMGFVEMVEKGEIRKVVDALSGAQKLGIGSLELFGGATKEAL 636
V ++F ALLN+K+VS G V ++E+G++R VV+ L+GAQKLGI L+L GA ++L
Sbjct: 96 VNAAEFAALLNAKIVSDGIVRLLEEGKLRSVVELLTGAQKLGIEPLKLLDGAAIDSL 152
Score = 26.2 bits (56), Expect(2) = 4e-08
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 633 VTRECCLIVKRGEVEELVDLMGILGGNLMSI 725
++REC ++ GE+EE V LM L G M I
Sbjct: 152 LSRECRRTMECGEIEEAVSLMETLKGCGMPI 182
>XP_012831937.1 PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic [Erythranthe guttata] EYU41644.1
hypothetical protein MIMGU_mgv1a001284mg [Erythranthe
guttata]
Length = 847
Score = 52.4 bits (124), Expect(2) = 2e-07
Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Frame = +1
Query: 466 VKPSQFVALLNSKLVSMGFVEMVEKGEIRKVVDAL-SGAQKLGIGSLELFGGATKEALRE 642
VKPS+F+ALLN+K V++G ++++G + VV L +G +K+GI +++F + E+LR
Sbjct: 101 VKPSEFLALLNAKCVAIGVARVLDEGNLHSVVKMLFNGLEKIGIDPVQMFDAVSTESLRR 160
Query: 643 NVA*LL 660
LL
Sbjct: 161 ECRRLL 166
Score = 31.2 bits (69), Expect(2) = 2e-07
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 639 RECCLIVKRGEVEELVDLMGILGG 710
REC ++KRGEVE+LV M L G
Sbjct: 160 RECRRLLKRGEVEQLVSFMETLAG 183
>XP_019239264.1 PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic [Nicotiana attenuata]
Length = 903
Score = 57.0 bits (136), Expect(2) = 3e-07
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = +1
Query: 466 VKPSQFVALLNSKLVSMGFVEMVEKGEIRKVVDALSGAQKLGIGSLELFGGATKEAL 636
V ++F ALLN+K+VS G V ++E+G++R VV+ L+GA KLGI L+L GA +L
Sbjct: 140 VNAAEFAALLNAKIVSDGIVRLLEEGKLRSVVELLTGAHKLGIEPLKLLDGAAINSL 196
Score = 25.8 bits (55), Expect(2) = 3e-07
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 633 VTRECCLIVKRGEVEELVDLMGILGGNLMSI 725
++REC ++ G++EE+V LM L G M I
Sbjct: 196 LSRECKRTMECGDIEEVVSLMETLKGCGMPI 226
>OIT21153.1 pentatricopeptide repeat-containing protein, chloroplastic
[Nicotiana attenuata]
Length = 867
Score = 57.0 bits (136), Expect(2) = 3e-07
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = +1
Query: 466 VKPSQFVALLNSKLVSMGFVEMVEKGEIRKVVDALSGAQKLGIGSLELFGGATKEAL 636
V ++F ALLN+K+VS G V ++E+G++R VV+ L+GA KLGI L+L GA +L
Sbjct: 104 VNAAEFAALLNAKIVSDGIVRLLEEGKLRSVVELLTGAHKLGIEPLKLLDGAAINSL 160
Score = 25.8 bits (55), Expect(2) = 3e-07
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 633 VTRECCLIVKRGEVEELVDLMGILGGNLMSI 725
++REC ++ G++EE+V LM L G M I
Sbjct: 160 LSRECKRTMECGDIEEVVSLMETLKGCGMPI 190
>XP_016542464.1 PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic [Capsicum annuum]
Length = 860
Score = 54.7 bits (130), Expect(2) = 4e-06
Identities = 28/59 (47%), Positives = 40/59 (67%)
Frame = +1
Query: 466 VKPSQFVALLNSKLVSMGFVEMVEKGEIRKVVDALSGAQKLGIGSLELFGGATKEALRE 642
V ++FV LLN KLVS G V ++E+G+I +V+ L+GAQ+LGI +L GA AL +
Sbjct: 107 VNAAEFVDLLNVKLVSAGIVRLLEEGKIGSIVELLNGAQQLGIDPSKLLDGAAVNALSQ 165
Score = 24.3 bits (51), Expect(2) = 4e-06
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 633 VTRECCLIVKRGEVEELVDLMGILGGNLMSI 725
+++EC ++ G++EE+V LM L G M I
Sbjct: 163 LSQECRRTMECGQIEEVVSLMETLKGCGMPI 193
>CDP06691.1 unnamed protein product [Coffea canephora]
Length = 853
Score = 57.4 bits (137), Expect = 7e-06
Identities = 31/67 (46%), Positives = 42/67 (62%)
Frame = +1
Query: 442 FSVSCGRIVKPSQFVALLNSKLVSMGFVEMVEKGEIRKVVDALSGAQKLGIGSLELFGGA 621
F VS G KPSQFVALL+ +VS G M++ G + +++ L G +KLG +ELF G
Sbjct: 97 FVVSGG---KPSQFVALLDVNIVSAGISRMIKDGRLGSLIEVLGGLRKLGFAVVELFDGL 153
Query: 622 TKEALRE 642
EALR+
Sbjct: 154 AVEALRQ 160