BLASTX nr result
ID: Panax24_contig00019965
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00019965
(413 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_008243014.1 PREDICTED: F-box protein SKIP1-like [Prunus mume] 60 7e-08
XP_007202327.1 hypothetical protein PRUPE_ppa009141mg [Prunus pe... 60 7e-08
XP_018828403.1 PREDICTED: F-box protein SKIP1 [Juglans regia] 59 1e-07
XP_008352212.1 PREDICTED: LOW QUALITY PROTEIN: F-box protein SKI... 58 3e-07
XP_016200328.1 PREDICTED: F-box protein SKIP1 [Arachis ipaensis] 58 3e-07
XP_015933019.1 PREDICTED: F-box protein SKIP1 [Arachis duranensis] 58 3e-07
XP_019070396.1 PREDICTED: F-box protein SKIP1 isoform X2 [Solanu... 57 5e-07
XP_009366195.1 PREDICTED: F-box protein SKIP1 isoform X1 [Pyrus ... 57 9e-07
XP_018505126.1 PREDICTED: F-box protein SKIP1-like [Pyrus x bret... 57 1e-06
OMO90844.1 hypothetical protein COLO4_18825 [Corchorus olitorius] 54 1e-06
XP_010536972.1 PREDICTED: F-box protein SKIP1 [Tarenaya hassleri... 56 2e-06
XP_018503440.1 PREDICTED: LOW QUALITY PROTEIN: F-box protein SKI... 56 2e-06
GAV83203.1 LRR_1 domain-containing protein/LRR_6 domain-containi... 56 2e-06
XP_018482247.1 PREDICTED: putative F-box/LRR-repeat protein 19 [... 55 2e-06
XP_013705785.1 PREDICTED: putative F-box/LRR-repeat protein 19 [... 55 2e-06
XP_013597215.1 PREDICTED: putative F-box/LRR-repeat protein 19 [... 55 2e-06
XP_015080379.1 PREDICTED: F-box protein SKIP1-like [Solanum penn... 55 2e-06
XP_006343634.1 PREDICTED: F-box protein SKIP1 [Solanum tuberosum] 55 2e-06
CDX72258.1 BnaC07g42800D [Brassica napus] 55 4e-06
OIT27739.1 f-box protein skip1 [Nicotiana attenuata] 55 4e-06
>XP_008243014.1 PREDICTED: F-box protein SKIP1-like [Prunus mume]
Length = 305
Score = 59.7 bits (143), Expect = 7e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEP 105
R++LEQRWR M VCKSWLQA +PCLN+ FDL+P
Sbjct: 31 RVSLEQRWRGAMLVCKSWLQACKEPCLNSAFDLQP 65
>XP_007202327.1 hypothetical protein PRUPE_ppa009141mg [Prunus persica] ONH98754.1
hypothetical protein PRUPE_7G264700 [Prunus persica]
Length = 305
Score = 59.7 bits (143), Expect = 7e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEP 105
R++LEQRWR M VCKSWLQA +PCLN+ FDL+P
Sbjct: 31 RVSLEQRWRGAMLVCKSWLQACKEPCLNSAFDLQP 65
>XP_018828403.1 PREDICTED: F-box protein SKIP1 [Juglans regia]
Length = 311
Score = 58.9 bits (141), Expect = 1e-07
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEP 105
RLTLE RWR M VCKSW QA DPCL++ FDLEP
Sbjct: 34 RLTLEHRWRGTMLVCKSWFQACKDPCLHSSFDLEP 68
>XP_008352212.1 PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP1-like [Malus
domestica]
Length = 257
Score = 57.8 bits (138), Expect = 3e-07
Identities = 39/101 (38%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEPQSIP----TPXXXXXXXXXGLEKWL 168
RLTLE RW M VCKSWL +PCLN+ FDLEP TP L +
Sbjct: 31 RLTLEHRWIGAMLVCKSWLLVCKEPCLNSAFDLEPPFXSARWWTPEFERRVDSM-LRSVV 89
Query: 169 DYSSGHQKVVRAL----QSCTCVK*WVSRASDVSIAKVPNL 279
D+S+G QK +R QS + V +SI PN+
Sbjct: 90 DWSTGSQKQIRTTHCSNQSLSLVAQRCPNLEFLSINSCPNV 130
>XP_016200328.1 PREDICTED: F-box protein SKIP1 [Arachis ipaensis]
Length = 309
Score = 57.8 bits (138), Expect = 3e-07
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEPQSIPTP 123
RLT++ RWR M VCKSWL+A DP L+T+F+L+PQ P P
Sbjct: 31 RLTIQDRWRGTMLVCKSWLRAFKDPSLHTIFNLDPQFDPPP 71
>XP_015933019.1 PREDICTED: F-box protein SKIP1 [Arachis duranensis]
Length = 309
Score = 57.8 bits (138), Expect = 3e-07
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEPQSIPTP 123
RLT++ RWR M VCKSWL+A DP L+T+F+L+PQ P P
Sbjct: 31 RLTIQDRWRGTMLVCKSWLRAFKDPSLHTIFNLDPQFDPPP 71
>XP_019070396.1 PREDICTED: F-box protein SKIP1 isoform X2 [Solanum lycopersicum]
Length = 312
Score = 57.4 bits (137), Expect = 5e-07
Identities = 26/38 (68%), Positives = 29/38 (76%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEPQSI 114
RL++E RWR MFVCKSWLQA DP LN+V DLE Q I
Sbjct: 30 RLSIEDRWRGAMFVCKSWLQACKDPNLNSVIDLEAQFI 67
>XP_009366195.1 PREDICTED: F-box protein SKIP1 isoform X1 [Pyrus x bretschneideri]
XP_009366196.1 PREDICTED: F-box protein SKIP1 isoform X2
[Pyrus x bretschneideri]
Length = 310
Score = 56.6 bits (135), Expect = 9e-07
Identities = 24/35 (68%), Positives = 25/35 (71%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEP 105
RLTLE RW M VCK WLQ DPCLN+ FDLEP
Sbjct: 31 RLTLEHRWSGPMLVCKPWLQVCKDPCLNSAFDLEP 65
>XP_018505126.1 PREDICTED: F-box protein SKIP1-like [Pyrus x bretschneideri]
Length = 392
Score = 56.6 bits (135), Expect = 1e-06
Identities = 24/35 (68%), Positives = 25/35 (71%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEP 105
RLTLE RW M VCK WLQ DPCLN+ FDLEP
Sbjct: 31 RLTLEHRWSGPMLVCKPWLQVCKDPCLNSAFDLEP 65
>OMO90844.1 hypothetical protein COLO4_18825 [Corchorus olitorius]
Length = 130
Score = 53.9 bits (128), Expect = 1e-06
Identities = 24/34 (70%), Positives = 25/34 (73%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLE 102
RLTLE RWR M VCK WL A DP L+TVFDLE
Sbjct: 35 RLTLEHRWRGAMLVCKPWLNACKDPTLHTVFDLE 68
>XP_010536972.1 PREDICTED: F-box protein SKIP1 [Tarenaya hassleriana]
Length = 301
Score = 55.8 bits (133), Expect = 2e-06
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEP 105
RLTLE+RW+ MFVCKSWL A+ DP L +VFDLEP
Sbjct: 22 RLTLEERWKGPMFVCKSWLLASRDPFLFSVFDLEP 56
>XP_018503440.1 PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP1 [Pyrus x
bretschneideri]
Length = 305
Score = 55.8 bits (133), Expect = 2e-06
Identities = 33/71 (46%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEPQSIP----TPXXXXXXXXXGLEKWL 168
RLTLEQRW M VCK WLQA PCLN+ F LEP S TP L +
Sbjct: 31 RLTLEQRWIGPMLVCKPWLQACKQPCLNSAFHLEPPSESARWWTPEFERRVDSM-LRSVV 89
Query: 169 DYSSGHQKVVR 201
D+S+G K +R
Sbjct: 90 DWSAGSLKQIR 100
>GAV83203.1 LRR_1 domain-containing protein/LRR_6 domain-containing protein
[Cephalotus follicularis]
Length = 313
Score = 55.8 bits (133), Expect = 2e-06
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLE 102
RLTLE+RWR M VCKSWL+A+ DP LN+VFDL+
Sbjct: 35 RLTLEERWRGPMLVCKSWLKASQDPSLNSVFDLD 68
>XP_018482247.1 PREDICTED: putative F-box/LRR-repeat protein 19 [Raphanus sativus]
Length = 278
Score = 55.5 bits (132), Expect = 2e-06
Identities = 34/81 (41%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEP--QSIPTPXXXXXXXXXG------L 156
RL+LE+RW MFVCK+W+ DP LN VFDLE QS+P G L
Sbjct: 23 RLSLEERWNGPMFVCKTWMNGCQDPSLNLVFDLETKFQSLPGSVSCWWSPEFGDKIDSVL 82
Query: 157 EKWLDYSSGHQKVVRALQSCT 219
+D+S G K VR ++ CT
Sbjct: 83 RSVVDWSKGGLKEVR-VRHCT 102
>XP_013705785.1 PREDICTED: putative F-box/LRR-repeat protein 19 [Brassica napus]
Length = 278
Score = 55.5 bits (132), Expect = 2e-06
Identities = 41/105 (39%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEP--QSIPTPXXXXXXXXXG------L 156
RL+LE+RW MFVCK+W+ DP LN VFDLE QS+P G L
Sbjct: 23 RLSLEERWTGPMFVCKTWMNGCQDPSLNLVFDLETKFQSLPGSLSCWWSPEFGDKIDSVL 82
Query: 157 EKWLDYSSGHQKVVRALQSCTCVK*WVSRASDVSIAKV----PNL 279
+D+S G K VR VS +D SI+ V PNL
Sbjct: 83 RSVVDWSQGGLKEVR-----------VSHCTDSSISYVAERCPNL 116
>XP_013597215.1 PREDICTED: putative F-box/LRR-repeat protein 19 [Brassica oleracea
var. oleracea]
Length = 278
Score = 55.5 bits (132), Expect = 2e-06
Identities = 41/105 (39%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEP--QSIPTPXXXXXXXXXG------L 156
RL+LE+RW MFVCK+W+ DP LN VFDLE QS+P G L
Sbjct: 23 RLSLEERWTGPMFVCKTWMNGCQDPSLNLVFDLETKFQSLPGSLSCWWSPEFGDKIDSVL 82
Query: 157 EKWLDYSSGHQKVVRALQSCTCVK*WVSRASDVSIAKV----PNL 279
+D+S G K VR VS +D SI+ V PNL
Sbjct: 83 RSVVDWSQGGLKEVR-----------VSHCTDSSISYVAERCPNL 116
>XP_015080379.1 PREDICTED: F-box protein SKIP1-like [Solanum pennellii]
Length = 306
Score = 55.5 bits (132), Expect = 2e-06
Identities = 25/37 (67%), Positives = 28/37 (75%)
Frame = +1
Query: 4 LTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEPQSI 114
L++E RWR MFVCKSWLQA DP LN+V DLE Q I
Sbjct: 31 LSIEDRWRGAMFVCKSWLQACKDPNLNSVIDLEAQFI 67
>XP_006343634.1 PREDICTED: F-box protein SKIP1 [Solanum tuberosum]
Length = 308
Score = 55.5 bits (132), Expect = 2e-06
Identities = 25/37 (67%), Positives = 28/37 (75%)
Frame = +1
Query: 4 LTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEPQSI 114
L++E RWR MFVCKSWLQA DP LN+V DLE Q I
Sbjct: 31 LSIEDRWRGAMFVCKSWLQACKDPNLNSVIDLEAQFI 67
>CDX72258.1 BnaC07g42800D [Brassica napus]
Length = 281
Score = 54.7 bits (130), Expect = 4e-06
Identities = 34/81 (41%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEP--QSIPTPXXXXXXXXXG------L 156
RL+LE+RW MFVCK+W+ DP LN VFDLE QS+P G L
Sbjct: 23 RLSLEERWTGPMFVCKTWMNGCQDPSLNLVFDLETKFQSLPGSLSCWWSPEFGDKIDSVL 82
Query: 157 EKWLDYSSGHQKVVRALQSCT 219
+D+S G K VR + CT
Sbjct: 83 RSVVDWSQGGLKEVR-VSHCT 102
>OIT27739.1 f-box protein skip1 [Nicotiana attenuata]
Length = 299
Score = 54.7 bits (130), Expect = 4e-06
Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Frame = +1
Query: 1 RLTLEQRWRRVMFVCKSWLQAAGDPCLNTVFDLEPQSIPTPXXXXXXXXXGLEKWLDYSS 180
RL++E RWR MFVCK W QA DP LN+V DLE Q + G E+ +D S
Sbjct: 31 RLSIEDRWRGAMFVCKPWFQACKDPTLNSVIDLETQ-FESSTKPSRFWTPGFERKMD-SM 88
Query: 181 GHQKVVRALQSCTCVK*WVSRASDVSIAKV----PNL 279
V+ + S T V+ V SD S+A + PNL
Sbjct: 89 LRSVVLWSDGSLTTVR--VRHCSDQSLALIAERSPNL 123