BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax24_contig00017960
         (483 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_019079284.1 PREDICTED: RNA polymerase II subunit 5-mediating ...    57   1e-06
XP_010656984.1 PREDICTED: RNA polymerase II subunit 5-mediating ...    57   1e-06
CBI21871.3 unnamed protein product, partial [Vitis vinifera]           57   1e-06
XP_019159040.1 PREDICTED: uncharacterized protein LOC109155828 i...    55   8e-06
XP_019159039.1 PREDICTED: RNA polymerase II subunit 5-mediating ...    55   8e-06
XP_019159038.1 PREDICTED: RNA polymerase II subunit 5-mediating ...    55   9e-06

>XP_019079284.1 PREDICTED: RNA polymerase II subunit 5-mediating protein homolog
           isoform X2 [Vitis vinifera]
          Length = 381

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/44 (68%), Positives = 34/44 (77%), Gaps = 7/44 (15%)
 Frame = -3

Query: 481 AFTGSIVEHTRNMDSNPSEQAAAST-------SKPVSRFKMQRR 371
           AFTGSIVEHTRN+  NP EQAA+S+       +KPVSRFKMQRR
Sbjct: 338 AFTGSIVEHTRNIQMNPREQAASSSQSSGSQPTKPVSRFKMQRR 381


>XP_010656984.1 PREDICTED: RNA polymerase II subunit 5-mediating protein homolog
           isoform X1 [Vitis vinifera]
          Length = 385

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/44 (68%), Positives = 34/44 (77%), Gaps = 7/44 (15%)
 Frame = -3

Query: 481 AFTGSIVEHTRNMDSNPSEQAAAST-------SKPVSRFKMQRR 371
           AFTGSIVEHTRN+  NP EQAA+S+       +KPVSRFKMQRR
Sbjct: 342 AFTGSIVEHTRNIQMNPREQAASSSQSSGSQPTKPVSRFKMQRR 385


>CBI21871.3 unnamed protein product, partial [Vitis vinifera]
          Length = 393

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/44 (68%), Positives = 34/44 (77%), Gaps = 7/44 (15%)
 Frame = -3

Query: 481 AFTGSIVEHTRNMDSNPSEQAAAST-------SKPVSRFKMQRR 371
           AFTGSIVEHTRN+  NP EQAA+S+       +KPVSRFKMQRR
Sbjct: 350 AFTGSIVEHTRNIQMNPREQAASSSQSSGSQPTKPVSRFKMQRR 393


>XP_019159040.1 PREDICTED: uncharacterized protein LOC109155828 isoform X3 [Ipomoea
           nil]
          Length = 359

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 25/37 (67%), Positives = 28/37 (75%)
 Frame = -3

Query: 481 AFTGSIVEHTRNMDSNPSEQAAASTSKPVSRFKMQRR 371
           AFTGSIVEH+ N D+ P EQ     SKPVSRFKMQR+
Sbjct: 323 AFTGSIVEHSPNFDTQPREQVVGRASKPVSRFKMQRK 359


>XP_019159039.1 PREDICTED: RNA polymerase II subunit 5-mediating protein homolog
           isoform X2 [Ipomoea nil]
          Length = 377

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 25/37 (67%), Positives = 28/37 (75%)
 Frame = -3

Query: 481 AFTGSIVEHTRNMDSNPSEQAAASTSKPVSRFKMQRR 371
           AFTGSIVEH+ N D+ P EQ     SKPVSRFKMQR+
Sbjct: 341 AFTGSIVEHSPNFDTQPREQVVGRASKPVSRFKMQRK 377


>XP_019159038.1 PREDICTED: RNA polymerase II subunit 5-mediating protein homolog
           isoform X1 [Ipomoea nil]
          Length = 379

 Score = 54.7 bits (130), Expect = 9e-06
 Identities = 25/37 (67%), Positives = 28/37 (75%)
 Frame = -3

Query: 481 AFTGSIVEHTRNMDSNPSEQAAASTSKPVSRFKMQRR 371
           AFTGSIVEH+ N D+ P EQ     SKPVSRFKMQR+
Sbjct: 343 AFTGSIVEHSPNFDTQPREQVVGRASKPVSRFKMQRK 379