BLASTX nr result

ID: Panax24_contig00017889 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax24_contig00017889
         (485 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

JAT62822.1 Putative SWI/SNF-related matrix-associated actin-depe...    35   3e-06
KNA19146.1 hypothetical protein SOVF_064330 [Spinacia oleracea]        33   7e-06

>JAT62822.1 Putative SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 3-like 1,
           partial [Anthurium amnicola]
          Length = 941

 Score = 35.0 bits (79), Expect(4) = 3e-06
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 85  LSTLIDQNLITIQGIVPNMPGRSIRCNRSKISCQIHIFDGPE 210
           L+ L+D ++  ++GIVP  P      N  +I CQ+H+F  P+
Sbjct: 179 LAPLLDAHIALLEGIVPKPPNNP---NPFRIPCQVHVFSRPD 217



 Score = 29.6 bits (65), Expect(4) = 3e-06
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +1

Query: 379 NVIISELFLHQKEGLA*LVKR 441
           +VI SELF HQKEGL  LV R
Sbjct: 287 DVITSELFPHQKEGLGWLVHR 307



 Score = 25.8 bits (55), Expect(4) = 3e-06
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 228 LYLIAHDEASFGLS*AVFVME 290
           L+LIA  + +FGLS A FV+E
Sbjct: 231 LHLIADPDPAFGLSEAAFVLE 251



 Score = 25.4 bits (54), Expect(4) = 3e-06
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 440 DLPPFWVERSDGVYI 484
           DLPPFW ER DG ++
Sbjct: 312 DLPPFWEER-DGAFL 325


>KNA19146.1 hypothetical protein SOVF_064330 [Spinacia oleracea]
          Length = 859

 Score = 33.5 bits (75), Expect(4) = 7e-06
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +1

Query: 82  MLSTLIDQNLITIQGIVPNMPGRSIRCNRSKISCQIHIFDGPEGY 216
           +L+ L+D  LI ++GIVPN P +     + KI  Q+HIF   E +
Sbjct: 93  VLAPLMDTQLIIVEGIVPNTPYKG---PKFKIVVQLHIFARIEAF 134



 Score = 30.0 bits (66), Expect(4) = 7e-06
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +1

Query: 379 NVIISELFLHQKEGLA*LVKR 441
           +VI+SELF HQKEGL  LV R
Sbjct: 202 DVILSELFDHQKEGLGWLVGR 222



 Score = 26.6 bits (57), Expect(4) = 7e-06
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 213 LFDGWLYLIAHDEASFGLS*AVFVMETNGGMD 308
           +F G L LIA D ASF LS +  V E     D
Sbjct: 141 IFGGGLQLIAGDTASFALSESEVVKEKRNNKD 172



 Score = 24.6 bits (52), Expect(4) = 7e-06
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 440 DLPPFWVERSDGVYI 484
           +LPPFW E  DGV++
Sbjct: 227 ELPPFW-EEKDGVFV 240


Top