BLASTX nr result
ID: Panax24_contig00016874
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00016874
(564 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_017258175.1 PREDICTED: sm-like protein LSM1B [Daucus carota s... 135 1e-37
XP_019196450.1 PREDICTED: sm-like protein LSM1B [Ipomoea nil] 134 2e-37
XP_004303709.1 PREDICTED: sm-like protein LSM1B [Fragaria vesca ... 133 6e-37
OMO66134.1 hypothetical protein COLO4_30725 [Corchorus olitorius] 132 2e-36
OAY53239.1 hypothetical protein MANES_04G147400 [Manihot esculenta] 132 2e-36
XP_002271476.1 PREDICTED: sm-like protein LSM1B [Vitis vinifera]... 132 2e-36
XP_018835043.1 PREDICTED: sm-like protein LSM1B [Juglans regia] 131 3e-36
XP_015902522.1 PREDICTED: sm-like protein LSM1B [Ziziphus jujuba] 130 7e-36
XP_002532727.1 PREDICTED: sm-like protein LSM1B [Ricinus communi... 130 7e-36
OAY36383.1 hypothetical protein MANES_11G017100 [Manihot esculenta] 130 1e-35
XP_016459285.1 PREDICTED: sm-like protein LSM1B [Nicotiana tabacum] 130 1e-35
XP_009622144.1 PREDICTED: sm-like protein LSM1B [Nicotiana tomen... 129 2e-35
CDO97831.1 unnamed protein product [Coffea canephora] 129 2e-35
XP_008380788.1 PREDICTED: sm-like protein LSM1B [Malus domestica... 129 2e-35
XP_010322823.1 PREDICTED: sm-like protein LSM1B isoform X2 [Sola... 129 2e-35
XP_006357408.1 PREDICTED: sm-like protein LSM1B [Solanum tuberosum] 129 3e-35
XP_004241918.1 PREDICTED: sm-like protein LSM1B isoform X1 [Sola... 129 3e-35
XP_011036474.1 PREDICTED: probable U6 snRNA-associated Sm-like p... 129 4e-35
XP_016749609.1 PREDICTED: sm-like protein LSM1B [Gossypium hirsu... 129 4e-35
XP_002304120.1 small nuclear ribonucleoprotein [Populus trichoca... 129 4e-35
>XP_017258175.1 PREDICTED: sm-like protein LSM1B [Daucus carota subsp. sativus]
Length = 128
Score = 135 bits (339), Expect = 1e-37
Identities = 64/71 (90%), Positives = 69/71 (97%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
GE+YCDIPLGLY+IRGENVVLIGELDLEK+ELPP+MTRVSP EIKRAQK EREA+DLKGT
Sbjct: 58 GEIYCDIPLGLYIIRGENVVLIGELDLEKDELPPHMTRVSPAEIKRAQKAEREASDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLDMD
Sbjct: 118 MRKRMEFLDMD 128
>XP_019196450.1 PREDICTED: sm-like protein LSM1B [Ipomoea nil]
Length = 128
Score = 134 bits (338), Expect = 2e-37
Identities = 65/71 (91%), Positives = 69/71 (97%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDIPLGLY+IRGENVVLIGELDL+KEELPP+MTRVS EIKRAQKVEREATDLKGT
Sbjct: 58 GDLYCDIPLGLYIIRGENVVLIGELDLDKEELPPHMTRVSEAEIKRAQKVEREATDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLDMD
Sbjct: 118 MRKRMEFLDMD 128
>XP_004303709.1 PREDICTED: sm-like protein LSM1B [Fragaria vesca subsp. vesca]
Length = 128
Score = 133 bits (335), Expect = 6e-37
Identities = 64/71 (90%), Positives = 68/71 (95%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
GELYCD+PLGLYVIRGENVVLIGELD E+EELPP+MTRVSP EIKRAQK EREA+DLKGT
Sbjct: 58 GELYCDLPLGLYVIRGENVVLIGELDAEREELPPHMTRVSPAEIKRAQKAEREASDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLDMD
Sbjct: 118 MRKRMEFLDMD 128
>OMO66134.1 hypothetical protein COLO4_30725 [Corchorus olitorius]
Length = 128
Score = 132 bits (332), Expect = 2e-36
Identities = 64/71 (90%), Positives = 68/71 (95%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDIPLGLYVIRGENVVLIGELDLE+EELPP+MTRVS EIKRAQK EREATDLKGT
Sbjct: 58 GDLYCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSAAEIKRAQKAEREATDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLD+D
Sbjct: 118 MRKRMEFLDLD 128
>OAY53239.1 hypothetical protein MANES_04G147400 [Manihot esculenta]
Length = 128
Score = 132 bits (332), Expect = 2e-36
Identities = 64/71 (90%), Positives = 68/71 (95%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDIPLGLYVIRGENVVLIGELDLE+EELPP+MTRVS EIKRAQK EREATDLKGT
Sbjct: 58 GDLYCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSAAEIKRAQKAEREATDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLD+D
Sbjct: 118 MRKRMEFLDLD 128
>XP_002271476.1 PREDICTED: sm-like protein LSM1B [Vitis vinifera] CAN62239.1
hypothetical protein VITISV_033727 [Vitis vinifera]
CBI35847.3 unnamed protein product, partial [Vitis
vinifera]
Length = 128
Score = 132 bits (331), Expect = 2e-36
Identities = 64/71 (90%), Positives = 68/71 (95%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDIPLGLYVIRGENVVLIGELDLEKEELPP+MTRVS EIKRAQK EREA+DLKGT
Sbjct: 58 GDLYCDIPLGLYVIRGENVVLIGELDLEKEELPPHMTRVSAAEIKRAQKAEREASDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLD+D
Sbjct: 118 MRKRMEFLDLD 128
>XP_018835043.1 PREDICTED: sm-like protein LSM1B [Juglans regia]
Length = 128
Score = 131 bits (330), Expect = 3e-36
Identities = 63/71 (88%), Positives = 68/71 (95%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
GELYCDIPLGLY+IRGENVVLIGELDLE+EELPP+MTRVS EIKRAQK EREATDLKG+
Sbjct: 58 GELYCDIPLGLYIIRGENVVLIGELDLEREELPPHMTRVSEAEIKRAQKAEREATDLKGS 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLD+D
Sbjct: 118 MRKRMEFLDLD 128
>XP_015902522.1 PREDICTED: sm-like protein LSM1B [Ziziphus jujuba]
Length = 128
Score = 130 bits (328), Expect = 7e-36
Identities = 63/71 (88%), Positives = 68/71 (95%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDIPLGLYVIRGENVVLIGELDLE+EELPP+MTRVS EIKRAQK EREATDLKG+
Sbjct: 58 GDLYCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSAAEIKRAQKAEREATDLKGS 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLD+D
Sbjct: 118 MRKRMEFLDLD 128
>XP_002532727.1 PREDICTED: sm-like protein LSM1B [Ricinus communis] EEF29658.1
lsm1, putative [Ricinus communis]
Length = 128
Score = 130 bits (328), Expect = 7e-36
Identities = 62/71 (87%), Positives = 68/71 (95%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDIPLGLY+IRGENVVLIGELDLEKEELPP+MTRVS EI+RAQK ER+ATDLKGT
Sbjct: 58 GDLYCDIPLGLYIIRGENVVLIGELDLEKEELPPHMTRVSAAEIRRAQKAERDATDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLD+D
Sbjct: 118 MRKRMEFLDLD 128
>OAY36383.1 hypothetical protein MANES_11G017100 [Manihot esculenta]
Length = 128
Score = 130 bits (326), Expect = 1e-35
Identities = 62/71 (87%), Positives = 68/71 (95%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDIPLGLYVIRGENVVLIGELDLE+EELPP+MTRVS EI+RAQK EREATDLKGT
Sbjct: 58 GDLYCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSAAEIRRAQKAEREATDLKGT 117
Query: 183 MRKRMEFLDMD 215
MR+RMEFLD+D
Sbjct: 118 MRRRMEFLDLD 128
>XP_016459285.1 PREDICTED: sm-like protein LSM1B [Nicotiana tabacum]
Length = 128
Score = 130 bits (326), Expect = 1e-35
Identities = 61/71 (85%), Positives = 68/71 (95%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDIPLGLY+IRGENVVLIGELD++KEELPP+MTRVS EI+RAQK ER+ATDLKGT
Sbjct: 58 GDLYCDIPLGLYIIRGENVVLIGELDIDKEELPPHMTRVSEAEIRRAQKAERDATDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLDMD
Sbjct: 118 MRKRMEFLDMD 128
>XP_009622144.1 PREDICTED: sm-like protein LSM1B [Nicotiana tomentosiformis]
XP_016506884.1 PREDICTED: sm-like protein LSM1B
[Nicotiana tabacum] XP_019230090.1 PREDICTED: sm-like
protein LSM1B [Nicotiana attenuata] OIT29674.1 sm-like
protein lsm1b [Nicotiana attenuata]
Length = 128
Score = 129 bits (325), Expect = 2e-35
Identities = 61/71 (85%), Positives = 68/71 (95%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDIPLGLY+IRGENVVLIGELD++KEELPP+MTRVS EI+RAQK ER+ATDLKGT
Sbjct: 58 GDLYCDIPLGLYIIRGENVVLIGELDVDKEELPPHMTRVSEAEIRRAQKAERDATDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLDMD
Sbjct: 118 MRKRMEFLDMD 128
>CDO97831.1 unnamed protein product [Coffea canephora]
Length = 128
Score = 129 bits (325), Expect = 2e-35
Identities = 62/71 (87%), Positives = 68/71 (95%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDIPLGLYVIRGENVVLIGELDL+KEELPP+MTRVS +IKRAQK EREATDLKG+
Sbjct: 58 GDLYCDIPLGLYVIRGENVVLIGELDLDKEELPPHMTRVSSTDIKRAQKAEREATDLKGS 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLD+D
Sbjct: 118 MRKRMEFLDLD 128
>XP_008380788.1 PREDICTED: sm-like protein LSM1B [Malus domestica] XP_008341819.1
PREDICTED: sm-like protein LSM1B [Malus domestica]
XP_009350857.1 PREDICTED: sm-like protein LSM1B [Pyrus x
bretschneideri]
Length = 128
Score = 129 bits (325), Expect = 2e-35
Identities = 63/71 (88%), Positives = 67/71 (94%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDIPLGLYVIRGENVVLIGELD E+EELPP+MTRVS EIKRAQK EREA+DLKGT
Sbjct: 58 GDLYCDIPLGLYVIRGENVVLIGELDSEREELPPHMTRVSAAEIKRAQKAEREASDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLDMD
Sbjct: 118 MRKRMEFLDMD 128
>XP_010322823.1 PREDICTED: sm-like protein LSM1B isoform X2 [Solanum lycopersicum]
Length = 119
Score = 129 bits (324), Expect = 2e-35
Identities = 61/71 (85%), Positives = 67/71 (94%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
GE+YCDIPLGLY+IRGENVVLIGELD++KEELPP+MTRV EI+RAQK EREATDLKGT
Sbjct: 49 GEIYCDIPLGLYIIRGENVVLIGELDVDKEELPPHMTRVPEAEIRRAQKAEREATDLKGT 108
Query: 183 MRKRMEFLDMD 215
MRKRMEFLDMD
Sbjct: 109 MRKRMEFLDMD 119
>XP_006357408.1 PREDICTED: sm-like protein LSM1B [Solanum tuberosum]
Length = 128
Score = 129 bits (324), Expect = 3e-35
Identities = 61/71 (85%), Positives = 67/71 (94%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
GE+YCDIPLGLY+IRGENVVLIGELD++KEELPP+MTRV EI+RAQK EREATDLKGT
Sbjct: 58 GEIYCDIPLGLYIIRGENVVLIGELDVDKEELPPHMTRVPEAEIRRAQKAEREATDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLDMD
Sbjct: 118 MRKRMEFLDMD 128
>XP_004241918.1 PREDICTED: sm-like protein LSM1B isoform X1 [Solanum lycopersicum]
XP_015077670.1 PREDICTED: sm-like protein LSM1B [Solanum
pennellii] XP_015077672.1 PREDICTED: sm-like protein
LSM1B [Solanum pennellii]
Length = 128
Score = 129 bits (324), Expect = 3e-35
Identities = 61/71 (85%), Positives = 67/71 (94%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
GE+YCDIPLGLY+IRGENVVLIGELD++KEELPP+MTRV EI+RAQK EREATDLKGT
Sbjct: 58 GEIYCDIPLGLYIIRGENVVLIGELDVDKEELPPHMTRVPEAEIRRAQKAEREATDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLDMD
Sbjct: 118 MRKRMEFLDMD 128
>XP_011036474.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm1
[Populus euphratica]
Length = 128
Score = 129 bits (323), Expect = 4e-35
Identities = 63/71 (88%), Positives = 67/71 (94%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDI LGLYVIRGENVVLIGELDLE+EELPP+MTRVS EIKRAQK EREATDLKGT
Sbjct: 58 GDLYCDIHLGLYVIRGENVVLIGELDLEREELPPHMTRVSEAEIKRAQKAEREATDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLD+D
Sbjct: 118 MRKRMEFLDLD 128
>XP_016749609.1 PREDICTED: sm-like protein LSM1B [Gossypium hirsutum]
XP_017606755.1 PREDICTED: sm-like protein LSM1B
[Gossypium arboreum] KHG18956.1 U6 snRNA-associated
Sm-like protein LSm1 [Gossypium arboreum]
Length = 128
Score = 129 bits (323), Expect = 4e-35
Identities = 62/71 (87%), Positives = 67/71 (94%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDIPLGLYVIRGENVVLIGELDLE+EELPP+MT VS EI+RAQK EREATDLKGT
Sbjct: 58 GDLYCDIPLGLYVIRGENVVLIGELDLEREELPPHMTHVSVAEIRRAQKAEREATDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLD+D
Sbjct: 118 MRKRMEFLDLD 128
>XP_002304120.1 small nuclear ribonucleoprotein [Populus trichocarpa] EEE79099.1
small nuclear ribonucleoprotein [Populus trichocarpa]
Length = 128
Score = 129 bits (323), Expect = 4e-35
Identities = 63/71 (88%), Positives = 67/71 (94%)
Frame = +3
Query: 3 GELYCDIPLGLYVIRGENVVLIGELDLEKEELPPNMTRVSPVEIKRAQKVEREATDLKGT 182
G+LYCDI LGLYVIRGENVVLIGELDLE+EELPP+MTRVS EIKRAQK EREATDLKGT
Sbjct: 58 GDLYCDIHLGLYVIRGENVVLIGELDLEREELPPHMTRVSEAEIKRAQKAEREATDLKGT 117
Query: 183 MRKRMEFLDMD 215
MRKRMEFLD+D
Sbjct: 118 MRKRMEFLDLD 128