BLASTX nr result
ID: Panax24_contig00011727
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax24_contig00011727
(430 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AFK49064.1 unknown [Lotus japonicus] 206 3e-66
CAA30522.1 ORF 143 (chloroplast) [Glycine max] KHN32086.1 Putati... 157 6e-59
YP_009145083.1 ribosomal protein S12 (chloroplast) [Podococcus b... 144 4e-42
NP_862801.1 hypothetical protein CafeCp090 [Calycanthus floridus... 135 4e-39
YP_001109550.1 hypothetical protein Poptr_cp072 [Populus trichoc... 116 1e-31
OAY85602.1 30S ribosomal protein S12, chloroplastic [Ananas como... 114 3e-31
KQJ97119.1 hypothetical protein BRADI_3g28913 [Brachypodium dist... 112 1e-29
XP_017225397.1 PREDICTED: CASP-like protein 1D1 [Daucus carota s... 114 8e-29
YP_358631.1 hypothetical protein PhapfoPp085 [Phalaenopsis aphro... 103 2e-26
EEF42577.1 conserved hypothetical protein [Ricinus communis] 100 1e-22
XP_002894684.1 hypothetical protein ARALYDRAFT_892903 [Arabidops... 78 1e-16
YP_009002279.1 ribosomal protein S12 (chloroplast) [Pinguicula e... 81 1e-16
AFS35523.1 ribosomal protein S12, partial (plastid) [Fragaria mo... 77 3e-16
KRH54918.1 hypothetical protein GLYMA_06G218700 [Glycine max] 76 1e-15
YP_001312254.1 hypothetical protein CYtaCp089 [Cycas taitungensi... 75 3e-15
YP_001152253.1 ORF40x [Pinus koraiensis] ABP35493.1 ORF40x (chlo... 72 3e-14
YP_007474607.1 hypothetical_protein (chloroplast) [Cycas revolut... 70 2e-13
OAY32019.1 hypothetical protein MANES_14G160100, partial [Maniho... 66 4e-12
XP_019246421.1 PREDICTED: ATP synthase subunit alpha, chloroplas... 69 5e-12
YP_009184034.1 ribosomal protein S12 (chloroplast) [Dendrobium c... 65 6e-12
>AFK49064.1 unknown [Lotus japonicus]
Length = 128
Score = 206 bits (523), Expect = 3e-66
Identities = 108/130 (83%), Positives = 112/130 (86%)
Frame = +2
Query: 41 IICPRFNIEIISEVFPDFVRVNKQFEIPRLF*NRSESNSNDSKHFFLHYFGNLRTQSYGY 220
+ICPR NIE ISEVF DFVRVNKQFE+PRLF R + LHYF NLRTQSYGY
Sbjct: 1 MICPRSNIERISEVFLDFVRVNKQFEMPRLF--RLGPSQIAMIRSTLHYFENLRTQSYGY 58
Query: 221 VKYRISNPSRKRRETDTQFQVSKQNSILDLIDTYRILRKAVFDESRMYGLEGDLSYLSRS 400
VKYRISNPS+KRRETDTQFQVSKQNSILDLIDTYRILRKAVFDESRMYGLEGDLSYLSRS
Sbjct: 59 VKYRISNPSKKRRETDTQFQVSKQNSILDLIDTYRILRKAVFDESRMYGLEGDLSYLSRS 118
Query: 401 TLQYGVKKPK 430
TLQYG KKPK
Sbjct: 119 TLQYGAKKPK 128
>CAA30522.1 ORF 143 (chloroplast) [Glycine max] KHN32086.1 Putative 8.8 kDa
protein in rps12-tRNA-Val intergenic region [Glycine
soja]
Length = 143
Score = 157 bits (397), Expect(2) = 6e-59
Identities = 78/84 (92%), Positives = 79/84 (94%)
Frame = +2
Query: 179 LHYFGNLRTQSYGYVKYRISNPSRKRRETDTQFQVSKQNSILDLIDTYRILRKAVFDESR 358
LHYFGN RTQSYGYVKYRISNPSRKR TDTQFQVSKQNSILD+IDTYRIL KAVFDESR
Sbjct: 60 LHYFGNPRTQSYGYVKYRISNPSRKRGGTDTQFQVSKQNSILDIIDTYRILWKAVFDESR 119
Query: 359 MYGLEGDLSYLSRSTLQYGVKKPK 430
MYGLEGDLSYLSRSTLQYG KKPK
Sbjct: 120 MYGLEGDLSYLSRSTLQYGAKKPK 143
Score = 97.8 bits (242), Expect(2) = 6e-59
Identities = 51/60 (85%), Positives = 52/60 (86%)
Frame = +3
Query: 3 QKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY 182
QKIFFLK+FDSEL YVQG I K FQRFSLTLSVSTNNSK LDFFR GPSQIAMIRST Y
Sbjct: 3 QKIFFLKKFDSELRYVQGPIWKEFQRFSLTLSVSTNNSKCLDFFRIGPSQIAMIRSTLHY 62
>YP_009145083.1 ribosomal protein S12 (chloroplast) [Podococcus barteri]
YP_009145127.1 ribosomal protein S12 (chloroplast)
[Podococcus barteri] AKJ85882.1 ribosomal protein S12
(chloroplast) [Podococcus barteri] AKJ85883.1 ribosomal
protein S12 (chloroplast) [Podococcus barteri]
Length = 121
Score = 144 bits (364), Expect = 4e-42
Identities = 72/74 (97%), Positives = 73/74 (98%)
Frame = +2
Query: 209 SYGYVKYRISNPSRKRRETDTQFQVSKQNSILDLIDTYRILRKAVFDESRMYGLEGDLSY 388
SYGYVKYRISNPSRKRRETDTQF+VSKQNSILDLIDTYRIL KAVFDESRMYGLEGDLSY
Sbjct: 48 SYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDLSY 107
Query: 389 LSRSTLQYGVKKPK 430
LSRSTLQYGVKKPK
Sbjct: 108 LSRSTLQYGVKKPK 121
>NP_862801.1 hypothetical protein CafeCp090 [Calycanthus floridus var. glaucus]
NP_862814.1 hypothetical protein CafeCp092 [Calycanthus
floridus var. glaucus] Q7Y618.1 RecName:
Full=Uncharacterized 8.8 kDa protein in rps12-tRNA-Val
intergenic region (chloroplast) [Calycanthus floridus
var. glaucus] CAD28768.1 hypothetical protein
(chloroplast) [Calycanthus floridus var. glaucus]
CAD28782.1 hypothetical protein (chloroplast)
[Calycanthus floridus var. glaucus]
Length = 75
Score = 135 bits (340), Expect = 4e-39
Identities = 70/73 (95%), Positives = 70/73 (95%)
Frame = +3
Query: 3 QKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY 182
QKIFFLKRFDSELLYVQGSILK FQRFSLTLSVSTNNSKYLDFFRTGPSQIA IRSTSFY
Sbjct: 3 QKIFFLKRFDSELLYVQGSILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIATIRSTSFY 62
Query: 183 TISET*GLNRMDM 221
TISET GLNRMDM
Sbjct: 63 TISETQGLNRMDM 75
>YP_001109550.1 hypothetical protein Poptr_cp072 [Populus trichocarpa]
YP_001109569.1 hypothetical protein Poptr_cp092 [Populus
trichocarpa] ABO36754.1 conserved hypothetical protein
(chloroplast) [Populus trichocarpa] ABO36773.1 conserved
hypothetical protein (chloroplast) [Populus trichocarpa]
Length = 65
Score = 116 bits (290), Expect = 1e-31
Identities = 59/65 (90%), Positives = 60/65 (92%)
Frame = +3
Query: 87 LTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYTISET*GLNRMDM*NTGFPILAGKGGKR 266
+TLSVSTNNSK LDFFR GPSQIAMIRSTSFYTISET GLNRMDM NTGFPILAGKGGKR
Sbjct: 1 MTLSVSTNNSKCLDFFRAGPSQIAMIRSTSFYTISETQGLNRMDMENTGFPILAGKGGKR 60
Query: 267 ILNFK 281
ILN K
Sbjct: 61 ILNLK 65
>OAY85602.1 30S ribosomal protein S12, chloroplastic [Ananas comosus]
Length = 182
Score = 114 bits (285), Expect(2) = 3e-31
Identities = 58/60 (96%), Positives = 58/60 (96%)
Frame = +3
Query: 3 QKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY 182
QKIFFLKRFDSELLYVQG ILK FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY
Sbjct: 101 QKIFFLKRFDSELLYVQGPILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY 160
Score = 48.5 bits (114), Expect(2) = 3e-31
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 181 TLFRKPKDSIVWICKIQDFQS 243
TLFRKPKDSIVWICKIQDFQS
Sbjct: 162 TLFRKPKDSIVWICKIQDFQS 182
>KQJ97119.1 hypothetical protein BRADI_3g28913 [Brachypodium distachyon]
Length = 84
Score = 112 bits (279), Expect = 1e-29
Identities = 67/93 (72%), Positives = 71/93 (76%), Gaps = 2/93 (2%)
Frame = +3
Query: 3 QKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSF- 179
QKI FLKRFDSELLY RFSLTLSVSTNNSKYLDFFRTGPS +AMIRSTSF
Sbjct: 3 QKILFLKRFDSELLY----------RFSLTLSVSTNNSKYLDFFRTGPS-LAMIRSTSFS 51
Query: 180 -YTISET*GLNRMDM*NTGFPILAGKGGKRILN 275
I ++ +RMDM NTGF ILAGKGGKRILN
Sbjct: 52 ITLIRKSKDSDRMDMENTGFSILAGKGGKRILN 84
>XP_017225397.1 PREDICTED: CASP-like protein 1D1 [Daucus carota subsp. sativus]
Length = 232
Score = 114 bits (285), Expect = 8e-29
Identities = 55/61 (90%), Positives = 56/61 (91%)
Frame = -1
Query: 364 VHTTFIEYGFPQNSICIYEIEYGILFTHLKLSIRFPPFPARIGNPVFYISIRLSP*VSEI 185
VHTTFIEYGF QNSICIYEIEYGILFTH KLSIRFPPFPARI NPVFYISIR SP VS+I
Sbjct: 172 VHTTFIEYGFVQNSICIYEIEYGILFTHFKLSIRFPPFPARIENPVFYISIRFSPCVSQI 231
Query: 184 V 182
V
Sbjct: 232 V 232
>YP_358631.1 hypothetical protein PhapfoPp085 [Phalaenopsis aphrodite subsp.
formosana] AAW82567.1 hypothetical protein (chloroplast)
[Phalaenopsis aphrodite subsp. formosana]
Length = 77
Score = 103 bits (257), Expect = 2e-26
Identities = 52/59 (88%), Positives = 53/59 (89%)
Frame = -1
Query: 178 KEVLRIIAI*LGPVLKKSRYFELFVDTDKVRENL*NYFNIEPWTYNSSESNLFRKKIFC 2
KEVLRIIAI LGPVLKKSRYFELFVDTDK RENL NY NI PWTY+SSESNLFRKK FC
Sbjct: 3 KEVLRIIAIGLGPVLKKSRYFELFVDTDKGRENLLNYSNIGPWTYSSSESNLFRKKSFC 61
>EEF42577.1 conserved hypothetical protein [Ricinus communis]
Length = 286
Score = 99.8 bits (247), Expect = 1e-22
Identities = 49/55 (89%), Positives = 50/55 (90%)
Frame = -1
Query: 346 EYGFPQNSICIYEIEYGILFTHLKLSIRFPPFPARIGNPVFYISIRLSP*VSEIV 182
EYGF QNSICIYEIEYGILFTH KLSI PPFPARIGNPVFYISIRLSP VS+IV
Sbjct: 232 EYGFLQNSICIYEIEYGILFTHFKLSICSPPFPARIGNPVFYISIRLSPRVSKIV 286
>XP_002894684.1 hypothetical protein ARALYDRAFT_892903 [Arabidopsis lyrata subsp.
lyrata] EFH70943.1 hypothetical protein
ARALYDRAFT_892903 [Arabidopsis lyrata subsp. lyrata]
Length = 60
Score = 78.2 bits (191), Expect = 1e-16
Identities = 40/45 (88%), Positives = 41/45 (91%)
Frame = +3
Query: 87 LTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYTISET*GLNRMDM 221
+TLSVSTNNSK LDFFRT PSQIAMIRST FYTISET GLNRMDM
Sbjct: 16 VTLSVSTNNSKCLDFFRTDPSQIAMIRSTYFYTISETQGLNRMDM 60
>YP_009002279.1 ribosomal protein S12 (chloroplast) [Pinguicula ehlersiae]
CDL78835.1 ribosomal protein S12 (chloroplast)
[Pinguicula ehlersiae]
Length = 156
Score = 80.9 bits (198), Expect = 1e-16
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +2
Query: 308 LIDTYRILRKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 430
+IDTYRILRKAVFDESRMYGL GDLSYLSRSTLQYGVKKPK
Sbjct: 116 IIDTYRILRKAVFDESRMYGLGGDLSYLSRSTLQYGVKKPK 156
>AFS35523.1 ribosomal protein S12, partial (plastid) [Fragaria moschata]
Length = 40
Score = 76.6 bits (187), Expect = 3e-16
Identities = 38/40 (95%), Positives = 38/40 (95%)
Frame = +2
Query: 311 IDTYRILRKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 430
IDTY IL KAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 1 IDTYIILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 40
>KRH54918.1 hypothetical protein GLYMA_06G218700 [Glycine max]
Length = 87
Score = 76.3 bits (186), Expect = 1e-15
Identities = 40/49 (81%), Positives = 41/49 (83%)
Frame = +3
Query: 3 QKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPS 149
QKIFFLK+FDSEL YVQG I K FQRFS TLSVSTNNSK LDFFR G S
Sbjct: 3 QKIFFLKKFDSELRYVQGPIWKEFQRFSWTLSVSTNNSKCLDFFRIGLS 51
>YP_001312254.1 hypothetical protein CYtaCp089 [Cycas taitungensis] YP_001312284.1
hypothetical protein CYtaCp120 [Cycas taitungensis]
BAF64995.1 hypothetical protein (chloroplast) [Cycas
taitungensis] BAF65026.1 hypothetical protein
(chloroplast) [Cycas taitungensis]
Length = 64
Score = 74.7 bits (182), Expect = 3e-15
Identities = 38/50 (76%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Frame = -3
Query: 263 FPSFSC*DWKSCILHIHTIESLGFRNSVKR-SASNHCYLTRTCSKKVEVF 117
F FSC DWKS ILHI TI+SLG + SVK+ S SNHCYLTRTCSKKVEVF
Sbjct: 15 FLPFSCYDWKSRILHICTIKSLGSQKSVKKKSVSNHCYLTRTCSKKVEVF 64
>YP_001152253.1 ORF40x [Pinus koraiensis] ABP35493.1 ORF40x (chloroplast) [Pinus
koraiensis]
Length = 40
Score = 71.6 bits (174), Expect = 3e-14
Identities = 31/38 (81%), Positives = 32/38 (84%)
Frame = +3
Query: 315 IHIEFCGKPYSMKVVCTAWREIFHIFRDPPYNME*KSQ 428
+ IE CGKPYS KVVCT WREIFH FRDPPYNME KSQ
Sbjct: 1 MQIESCGKPYSTKVVCTVWREIFHTFRDPPYNMESKSQ 38
>YP_007474607.1 hypothetical_protein (chloroplast) [Cycas revoluta] YP_009308177.1
hypothetical protein (chloroplast) [Cycas
panzhihuaensis] AEX99157.1 hypothetical_protein
(chloroplast) [Cycas revoluta] AOS53126.1 hypothetical
protein (chloroplast) [Cycas panzhihuaensis]
Length = 60
Score = 69.7 bits (169), Expect = 2e-13
Identities = 36/49 (73%), Positives = 38/49 (77%)
Frame = -3
Query: 263 FPSFSC*DWKSCILHIHTIESLGFRNSVKRSASNHCYLTRTCSKKVEVF 117
F FSC DWKS ILHI TI+SLG + SV SNHCYLTRTCSKKVEVF
Sbjct: 15 FLPFSCYDWKSRILHICTIKSLGSQKSV---VSNHCYLTRTCSKKVEVF 60
>OAY32019.1 hypothetical protein MANES_14G160100, partial [Manihot esculenta]
Length = 48
Score = 66.2 bits (160), Expect = 4e-12
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = +3
Query: 78 RFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYTISET*GLNRMDM 221
RF LSVS NNSK L+FFRT PSQIA+IR++SFYTIS+ LNRMDM
Sbjct: 1 RFFFILSVSINNSKCLNFFRTSPSQIAIIRNSSFYTISKIQELNRMDM 48
>XP_019246421.1 PREDICTED: ATP synthase subunit alpha, chloroplastic-like
[Nicotiana attenuata]
Length = 177
Score = 69.3 bits (168), Expect = 5e-12
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -3
Query: 230 CILHIHTIESLGFRNSVKRSASNHCYLTRTCSKK 129
CILHIHTIESLGFRNSVKRSASNHCYLTRT KK
Sbjct: 61 CILHIHTIESLGFRNSVKRSASNHCYLTRTVLKK 94
>YP_009184034.1 ribosomal protein S12 (chloroplast) [Dendrobium chrysotoxum]
ALN98160.1 ribosomal protein S12 (chloroplast)
[Dendrobium chrysotoxum]
Length = 101
Score = 64.7 bits (156), Expect(2) = 6e-12
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = +3
Query: 78 RFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSF 179
RFSL LSVSTNNSKYLDFFRTGPS IAMIRSTSF
Sbjct: 38 RFSLPLSVSTNNSKYLDFFRTGPSPIAMIRSTSF 71
Score = 33.1 bits (74), Expect(2) = 6e-12
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 181 TLFRKPKDSIVWICK 225
TLFRKPKDSIVWI K
Sbjct: 74 TLFRKPKDSIVWISK 88