BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax24_contig00009799
         (5180 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ACL97384.1 Gag-Pol polyprotein [Medicago truncatula]                  244   0.0  
ACL97385.1 Gag-Pol polyprotein [Medicago truncatula]                  242   0.0  
ACL97383.1 Gag-Pol polyprotein [Medicago truncatula]                  243   0.0  
ACL97386.1 Gag-Pol polyprotein [Medicago truncatula]                  241   e-180
CAH66122.1 OSIGBa0146N20.7 [Oryza sativa Indica Group]                226   e-173
AAX92861.1 retrotransposon protein, putative, Ty1-copia sub-clas...   226   e-173
ABA98804.1 retrotransposon protein, putative, Ty1-copia subclass...   226   e-173
ABA98656.1 retrotransposon protein, putative, Ty1-copia subclass...   226   e-172
KYP42748.1 Retrovirus-related Pol polyprotein from transposon TN...   234   e-166
KYP53032.1 Retrovirus-related Pol polyprotein from transposon TN...   233   e-165
KYP38095.1 Retrovirus-related Pol polyprotein from transposon TN...   238   e-165
KYP36645.1 Retrovirus-related Pol polyprotein from transposon TN...   235   e-164
ACL97387.1 Gag-Pol polyprotein [Lotus japonicus]                      232   e-164
KYP67664.1 Retrovirus-related Pol polyprotein from transposon TN...   234   e-164
AFB73911.1 polyprotein [Citrus sinensis]                              219   e-164
AFB73912.1 polyprotein [Citrus sinensis]                              221   e-163
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN...   223   e-162
ABA97637.1 retrotransposon protein, putative, Ty1-copia subclass...   223   e-161
XP_015080794.1 PREDICTED: uncharacterized protein LOC107024343 [...   237   e-143
BAB09923.1 copia-like retrotransposable element [Arabidopsis tha...   186   e-140

>ACL97384.1 Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  244 bits (623), Expect(5) = 0.0
 Identities = 136/315 (43%), Positives = 197/315 (62%), Gaps = 4/315 (1%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            R F V  TP+QNG+ ERMNRTLLER R M   A ++KSFWAEA+ TACY INRSP   ID
Sbjct: 571  RQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAID 630

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P E+  GKP+D+S + +FG P YV    ++R +KLDP+ ++ IFLGY D VKGYRLW
Sbjct: 631  LKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQER-TKLDPKSRKCIFLGYADNVKGYRLW 689

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKSGNEESAASELQKHLVEVEFLEEIKKK*RD*RXXXXX 3303
            +P ++  V+SRDVVF E  + +K  N+ ++    +  +V++E   +              
Sbjct: 690  DPTARKVVVSRDVVFAENELQSKQKNDSTSK---ETAIVQMEEKSKESDSSEAEPVHEEQ 746

Query: 3304 XPREVL*SCERSGKASQQTS--TEI*V**HG--CLYLDCWYSGDPISYQNAIKSEDNDKW 3471
             P +V     RS + +Q+ S  ++  +  H   CL  +    G+P ++  A+   D  +W
Sbjct: 747  EPDDVNNGVRRSTRQTQKPSWQSDYVMTSHDAYCLITE---EGEPSTFHEALNGSDASQW 803

Query: 3472 SISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRKKETQSDKEGERFKARLMENRFSQ 3651
              +M +EME L +N+ WELV+LPKG KAI  KWV++ K   +D + ER++ARL+   ++Q
Sbjct: 804  MTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGND-QVERYRARLVVKGYAQ 862

Query: 3652 REGIEYNEIFSPVVK 3696
            +EGI++NEIFSPVV+
Sbjct: 863  KEGIDFNEIFSPVVR 877



 Score =  186 bits (473), Expect(5) = 0.0
 Identities = 134/395 (33%), Positives = 199/395 (50%), Gaps = 20/395 (5%)
 Frame = +2

Query: 3698 TLIRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLY 3877
            T IR++L++  + D+ LEQLDVKT FLHG+LE++IY+  PEGF E  KE LV  L KSLY
Sbjct: 879  TTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLY 938

Query: 3878 GLKQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDD--IVDSSK-- 4045
            GLKQ+PR WY +FD+F+++  YSR   D C Y++  D    ++L LYVDD  +V  +K  
Sbjct: 939  GLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDR 998

Query: 4046 -EEVRYSSVEEFVEQ*ILHEGSWFSQENPRYGNSQGLSGRKIVANSERICAEGLGEV*HE 4222
             +E++     EF  + +         +  R         RKI  + +    + L     +
Sbjct: 999  VQELKAQLAREFDMKDLGPANKILGMQIHR-----DRKDRKIWLSQKNYLRKVLRRFNMQ 1053

Query: 4223 QC*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVV 4402
             C      +   F++   + P+++     +S++ YA+ +G LMYAM+CTRP+I  A+ VV
Sbjct: 1054 DCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVV 1113

Query: 4403 SMY----GKFRERALKCCEMNFSLFSRYNQLWSYV*S*YCRK*GYMVC*FGLCWRLRCNE 4570
            S +    GK    A+K          RY +  S          G  VC  G    +R   
Sbjct: 1114 SRFMADPGKEHWNAVK-------RIMRYIKGTS----------GVAVCFGGSELTVRGYV 1156

Query: 4571 IYDRVCIHLLWKMYMLEVSVAVYGSI-----------INNRGREYMALTDASNEALWLKG 4717
              D    H   K     V     G++           ++    EYMA T A  EA+W++ 
Sbjct: 1157 DSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQR 1216

Query: 4718 LVEKLGFK*GSIQIQCDSQSDVHLAKNQVFHVRTQ 4822
            L+E+LG K   I + CDSQS +H+A+N  FH RT+
Sbjct: 1217 LMEELGHKQEQITVYCDSQSALHIARNPAFHSRTK 1251



 Score =  162 bits (410), Expect(5) = 0.0
 Identities = 112/366 (30%), Positives = 184/366 (50%), Gaps = 3/366 (0%)
 Frame = +1

Query: 1144 LANEKWTELEAKAVTTI*SN*V*RHISNIRF*QKPLRRTCGRNLRKFTSQSLCQTDYIWR 1323
            + +EKW E++  AV  +        +S+I   +K  +      ++ +  +SL    ++ R
Sbjct: 42   ITDEKWKEMDDNAVANLHLAMADSVLSSIAE-KKTAKEIWDTLIKLYEVKSLHNRIFLKR 100

Query: 1324 RNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLVLVSLPDSYSTIQTTLLI 1503
            R Y LRM E + +T+HIN  N L + LT+ D K+ E  +A L+L SLPDSY  +   +  
Sbjct: 101  RLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITN 160

Query: 1504 GN--KKLAVDDVMEAVLDQDKFRGITSRNQGDSFLAFLNRCGRGFNQKKYSDKEQEMSMS 1677
             N    L  DDV  A+L+++  R         S  A      RG + ++     Q    S
Sbjct: 161  NNIADTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRS 220

Query: 1678 RPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSANVAEQTDVCSDEELYTV 1857
            +   + K  ++ Y C  K H K +  ++KK  +K      +   VA  +D    E LY+ 
Sbjct: 221  K--SRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSD--DGEILYSE 276

Query: 1858 TENKVS*GDLLSVKDSSNIID*Y-MDFRCSFHMSPHMD*FDTFTSCNGGTILLGNNAVCK 2034
                       S K    + D + MD   ++HM+PH D F ++   + G++ +GN+   +
Sbjct: 277  AAT--------SSKGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALE 328

Query: 2035 VTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGCSISVRDGVMKITKVSMV 2214
            + G+GTI++KM DG V+ +  VR++  LKK+LLSVG LD +GC I    G++K+ K ++V
Sbjct: 329  IAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLV 388

Query: 2215 IMKG*K 2232
            +MK  K
Sbjct: 389  VMKAEK 394



 Score = 74.3 bits (181), Expect(5) = 0.0
 Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
 Frame = +2

Query: 2552 MGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRLDNDTEYK 2722
            +G A YFVSFID+YS+++WVY +K+KS+   VFK  KA+IE   GKK++  R DN  EY 
Sbjct: 497  LGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYV 556

Query: 2723 NRSFLQFCQDENI 2761
            +  FL FC+ E I
Sbjct: 557  DGEFLAFCKQEGI 569



 Score = 72.0 bits (175), Expect(5) = 0.0
 Identities = 43/95 (45%), Positives = 55/95 (57%)
 Frame = +3

Query: 2247 YKLIGDTIVGGTTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKFC 2426
            Y L+GDT+      S+   S   +T +WH RLGH SE  +K L +R LL GLKT  L   
Sbjct: 400  YMLLGDTLQEADA-SVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNL--- 455

Query: 2427 KFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVW 2531
             FC+ CV  KQ ++ F      SK+ILD +HSDVW
Sbjct: 456  PFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW 490



 Score =  182 bits (463), Expect = 1e-42
 Identities = 123/328 (37%), Positives = 177/328 (53%), Gaps = 18/328 (5%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +L+    K  + +LK  L+ EF MKDLG A KILGM+IHRD +  K WL+QK Y++KVL 
Sbjct: 989  MLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLR 1048

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQT---RME*NIFPNYRM--QM*WVV*CTPWYVQG 4373
            RFNM + K +STPL  +F+LSS +SP     RME +  P       + + + CT    + 
Sbjct: 1049 RFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICT----RP 1104

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSEVT--WFVDSDY 4547
             I+    V+   MA+ GKEH NAVK I RY+ GT+   + F     GSE+T   +VDSD+
Sbjct: 1105 DIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCF----GGSELTVRGYVDSDF 1160

Query: 4548 VGDLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAE----------SIWH*QMQAM 4697
             GD D  +S TG+V+T  G  + W S LQ+ VALSTTEAE          +IW    + M
Sbjct: 1161 AGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIW--MQRLM 1218

Query: 4698 RLCGLRD*LKNXXXXXXXXXXXXIVKAMFI*QRTR-CSMSGHKILE*LNNGDIAVRKVHT 4874
               G +   +             I +      RT+   +  H + E +  G + ++K+HT
Sbjct: 1219 EELGHKQ--EQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHT 1276

Query: 4875 KEIVADMLSKSVTTEKFKHCLDLIHFVE 4958
             + +AD ++KS+ T+KF  C  L   +E
Sbjct: 1277 NDNLADAMTKSINTDKFIWCRSLYGLLE 1304


>ACL97385.1 Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  242 bits (617), Expect(5) = 0.0
 Identities = 137/319 (42%), Positives = 197/319 (61%), Gaps = 8/319 (2%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            R F V  TP+QNG+ ERMNRTLLER R M   A ++KSFWAEA+ TACY INRSP   ID
Sbjct: 571  RQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTID 630

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P E+  GKP+D+S + +FG P YV    ++R +KLDP+ ++ IFLGY D VKGYRLW
Sbjct: 631  LKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQER-TKLDPKSRKCIFLGYADNVKGYRLW 689

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKSGNE----ESAASELQKHLVEVEFLEEIKKK*RD*RX 3291
            +P ++  V+SRDVVF E  + ++  N+    E+A  ++++   E +  E           
Sbjct: 690  DPTARKVVVSRDVVFAENELQSEQKNDSTFKETAILQIEEKSKESDSSEAES-------V 742

Query: 3292 XXXXXPREVL*SCERSGKASQQTSTEI*V**HG----CLYLDCWYSGDPISYQNAIKSED 3459
                 P +V     RS + +Q+ S +      G    CL  +    G+P ++  A+   D
Sbjct: 743  HEEQEPDDVNNGVRRSTRQTQKPSWQSDYVMTGHDAYCLIAE---EGEPSTFHEALNGSD 799

Query: 3460 NDKWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRKKETQSDKEGERFKARLMEN 3639
              +W  ++ +EME L+KN+ WELV+LPKG KAI  KWV++ K   +D + ER++ARL+  
Sbjct: 800  ASQWMTAIHEEMEALRKNKTWELVELPKGRKAIGNKWVYKIKRDGND-QVERYRARLVVK 858

Query: 3640 RFSQREGIEYNEIFSPVVK 3696
             ++Q+EGI++NEIFSPVV+
Sbjct: 859  GYAQKEGIDFNEIFSPVVR 877



 Score =  186 bits (471), Expect(5) = 0.0
 Identities = 132/395 (33%), Positives = 197/395 (49%), Gaps = 20/395 (5%)
 Frame = +2

Query: 3698 TLIRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLY 3877
            T IR++L++  + D+ LEQLDVKT FLHG+LE++IY+  PEGF E  KE LV  L KSLY
Sbjct: 879  TTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLY 938

Query: 3878 GLKQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDDIV-----DSS 4042
            GLKQ+PR WY +FD+F+++  Y+R   D C Y++  D    ++L LYVDDI+        
Sbjct: 939  GLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDILVVGPNKDR 998

Query: 4043 KEEVRYSSVEEFVEQ*ILHEGSWFSQENPRYGNSQGLSGRKIVANSERICAEGLGEV*HE 4222
             +E++     EF  + +         +  R         RKI  + +    + L     +
Sbjct: 999  VQELKAQLAREFDMKDLGPANKILGMQIHR-----DRKDRKIWLSQKNYLRKVLRRFNMQ 1053

Query: 4223 QC*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVV 4402
             C      +   F++   + P+++     +S++ YA+ +G LMYAM+CTRP+I  A+ VV
Sbjct: 1054 DCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVV 1113

Query: 4403 SMY----GKFRERALKCCEMNFSLFSRYNQLWSYV*S*YCRK*GYMVC*FGLCWRLRCNE 4570
            S +    GK    A+K          RY +  S          G  VC  G    +R   
Sbjct: 1114 SRFMADPGKEHWNAVK-------RIMRYIKGTS----------GVAVCFGGSELTVRGYV 1156

Query: 4571 IYDRVCIHLLWKMYMLEVSVAVYGSI-----------INNRGREYMALTDASNEALWLKG 4717
              D    H   K     V     G++           ++    EYMA T A  EA+W++ 
Sbjct: 1157 DSDFAGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQR 1216

Query: 4718 LVEKLGFK*GSIQIQCDSQSDVHLAKNQVFHVRTQ 4822
            L+E+LG K   I + CDSQS +H+A+N  FH RT+
Sbjct: 1217 LMEELGHKQEQITVYCDSQSALHIARNPAFHSRTK 1251



 Score =  159 bits (401), Expect(5) = 0.0
 Identities = 111/366 (30%), Positives = 184/366 (50%), Gaps = 3/366 (0%)
 Frame = +1

Query: 1144 LANEKWTELEAKAVTTI*SN*V*RHISNIRF*QKPLRRTCGRNLRKFTSQSLCQTDYIWR 1323
            + +EKW E++  AV  +        +S+I   +K  +      ++ +  +SL    ++ R
Sbjct: 42   ITDEKWKEMDDNAVANLHLAMADSVLSSIAE-KKTAKEIWDTLIKLYEVKSLHNRIFLKR 100

Query: 1324 RNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLVLVSLPDSYSTIQTTLLI 1503
            R Y LRM E + +T+HIN  N L + LT+ D K+ E  +A L+L SLPDSY  +   +  
Sbjct: 101  RLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITN 160

Query: 1504 GN--KKLAVDDVMEAVLDQDKFRGITSRNQGDSFLAFLNRCGRGFNQKKYSDKEQEMSMS 1677
             N    L  DDV  A+L+++  R         S  A      RG + ++     Q    S
Sbjct: 161  NNIADTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRS 220

Query: 1678 RPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSANVAEQTDVCSDEELYTV 1857
            +   + K+ ++ Y C  K H K +  + KK  +K      +   VA  +D    E LY+ 
Sbjct: 221  K--SRRKNNIKCYGCGMKGHVKKECWNNKKNGEKNSEATTSQGCVASTSD--DGEILYSE 276

Query: 1858 TENKVS*GDLLSVKDSSNIID*Y-MDFRCSFHMSPHMD*FDTFTSCNGGTILLGNNAVCK 2034
                       S +    + D + MD   ++HM+PH D F ++   + G++ +GN+   +
Sbjct: 277  AAT--------SSEGERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALE 328

Query: 2035 VTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGCSISVRDGVMKITKVSMV 2214
            + G+GTI++KM DG V+ +  VR++  LKK+LLSVG LD +GC I    G++K+ K ++V
Sbjct: 329  IAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLV 388

Query: 2215 IMKG*K 2232
            +MK  K
Sbjct: 389  VMKAEK 394



 Score = 74.3 bits (181), Expect(5) = 0.0
 Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
 Frame = +2

Query: 2552 MGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRLDNDTEYK 2722
            +G A YFVSFID+YS+++WVY +K+KS+   VFK  KA+IE   GKK++  R DN  EY 
Sbjct: 497  LGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYV 556

Query: 2723 NRSFLQFCQDENI 2761
            +  FL FC+ E I
Sbjct: 557  DGEFLAFCKQEGI 569



 Score = 72.0 bits (175), Expect(5) = 0.0
 Identities = 43/95 (45%), Positives = 55/95 (57%)
 Frame = +3

Query: 2247 YKLIGDTIVGGTTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKFC 2426
            Y L+GDT+      S+   S   +T +WH RLGH SE  +K L +R LL GLKT  L   
Sbjct: 400  YMLLGDTLQEADA-SVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNL--- 455

Query: 2427 KFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVW 2531
             FC+ CV  KQ ++ F      SK+ILD +HSDVW
Sbjct: 456  PFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW 490



 Score =  177 bits (450), Expect = 4e-41
 Identities = 119/320 (37%), Positives = 173/320 (54%), Gaps = 18/320 (5%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +L+    K  + +LK  L+ EF MKDLG A KILGM+IHRD +  K WL+QK Y++KVL 
Sbjct: 989  ILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLR 1048

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQT---RME*NIFPNYRM--QM*WVV*CTPWYVQG 4373
            RFNM + K +STPL  +F+LSS +SP     RME +  P       + + + CT    + 
Sbjct: 1049 RFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICT----RP 1104

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSEVT--WFVDSDY 4547
             I+    V+   MA+ GKEH NAVK I RY+ GT+   + F     GSE+T   +VDSD+
Sbjct: 1105 DIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCF----GGSELTVRGYVDSDF 1160

Query: 4548 VGDLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAE----------SIWH*QMQAM 4697
             GD D  +S TG+V+T  G  + W S LQ+ VALSTTEAE          +IW    + M
Sbjct: 1161 AGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIW--MQRLM 1218

Query: 4698 RLCGLRD*LKNXXXXXXXXXXXXIVKAMFI*QRTR-CSMSGHKILE*LNNGDIAVRKVHT 4874
               G +   +             I +      RT+   +  H + E +  G + ++K+HT
Sbjct: 1219 EELGHKQ--EQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHT 1276

Query: 4875 KEIVADMLSKSVTTEKFKHC 4934
             + +AD+++K +  +KF  C
Sbjct: 1277 NDNLADVMTKPINADKFVWC 1296


>ACL97383.1 Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  243 bits (620), Expect(5) = 0.0
 Identities = 135/315 (42%), Positives = 197/315 (62%), Gaps = 4/315 (1%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            R F V  TP+QNG+ ERMNRTLLER R M   A ++KSFWAEA+ TACY INRSP   ID
Sbjct: 571  RQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAID 630

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P E+  GKP+D+S + +FG P YV    ++R +KLDP+ ++ IFLGY D VKGYRLW
Sbjct: 631  LKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQER-TKLDPKSRKCIFLGYADNVKGYRLW 689

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKSGNEESAASELQKHLVEVEFLEEIKKK*RD*RXXXXX 3303
            +P ++  V+SRDVVF E  + ++  N+ ++    +  +V++E   +              
Sbjct: 690  DPTARKVVVSRDVVFAENELQSEQKNDSTSK---ETAIVQMEEKSKESDSSEAESVHEEQ 746

Query: 3304 XPREVL*SCERSGKASQQTS--TEI*V**HG--CLYLDCWYSGDPISYQNAIKSEDNDKW 3471
             P +V     RS + +Q+ S  ++  +  H   CL  +    G+P ++  A+   D  +W
Sbjct: 747  EPDDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCLITE---EGEPSTFHEALNGSDASQW 803

Query: 3472 SISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRKKETQSDKEGERFKARLMENRFSQ 3651
              +M +EME L +N+ WELV+LPKG KAI  KWV++ K   +D + ER++ARL+   ++Q
Sbjct: 804  MTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGND-QVERYRARLVVKGYAQ 862

Query: 3652 REGIEYNEIFSPVVK 3696
            +EGI++NEIFSPVV+
Sbjct: 863  KEGIDFNEIFSPVVR 877



 Score =  184 bits (467), Expect(5) = 0.0
 Identities = 133/395 (33%), Positives = 198/395 (50%), Gaps = 20/395 (5%)
 Frame = +2

Query: 3698 TLIRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLY 3877
            T IR++L++  + D+ LEQLDVKT FLHG+LE++IY+  PEGF E  KE LV  L KSLY
Sbjct: 879  TTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLY 938

Query: 3878 GLKQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDD--IVDSSK-- 4045
            GLKQ+PR WY +FD+F+++  YSR   D C Y++  D    ++L LYVDD  +V  +K  
Sbjct: 939  GLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDR 998

Query: 4046 -EEVRYSSVEEFVEQ*ILHEGSWFSQENPRYGNSQGLSGRKIVANSERICAEGLGEV*HE 4222
             +E++     EF  + +         +  R          KI  + +    + L     +
Sbjct: 999  VQELKAQLAREFDMKDLGPANKILGMQIHR-----DRKDMKIWLSQKNYLRKVLRRFNMQ 1053

Query: 4223 QC*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVV 4402
             C      +   F++   + P+++     +S++ YA+ +G LMYAM+CTRP+I  A+ VV
Sbjct: 1054 DCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVV 1113

Query: 4403 SMY----GKFRERALKCCEMNFSLFSRYNQLWSYV*S*YCRK*GYMVC*FGLCWRLRCNE 4570
            S +    GK    A+K          RY +  S          G  VC  G    +R   
Sbjct: 1114 SRFMADPGKEHWNAVK-------RIMRYIKGTS----------GVAVCFGGSELTVRGYV 1156

Query: 4571 IYDRVCIHLLWKMYMLEVSVAVYGSI-----------INNRGREYMALTDASNEALWLKG 4717
              D    H   K     V     G++           ++    EYMA T A  EA+W++ 
Sbjct: 1157 DSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQR 1216

Query: 4718 LVEKLGFK*GSIQIQCDSQSDVHLAKNQVFHVRTQ 4822
            L+E+LG K   I + CDSQS +H+A+N  FH RT+
Sbjct: 1217 LMEELGHKQEQITVYCDSQSALHIARNPAFHSRTK 1251



 Score =  162 bits (410), Expect(5) = 0.0
 Identities = 112/366 (30%), Positives = 184/366 (50%), Gaps = 3/366 (0%)
 Frame = +1

Query: 1144 LANEKWTELEAKAVTTI*SN*V*RHISNIRF*QKPLRRTCGRNLRKFTSQSLCQTDYIWR 1323
            + +EKW E++  AV  +        +S+I   +K  +      ++ +  +SL    ++ R
Sbjct: 42   ITDEKWKEMDDNAVANLHLAMADSVLSSIAE-KKTAKEIWDTLIKLYEVKSLHNRIFLKR 100

Query: 1324 RNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLVLVSLPDSYSTIQTTLLI 1503
            R Y LRM E + +T+HIN  N L + LT+ D K+ E  +A L+L SLPDSY  +   +  
Sbjct: 101  RLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITN 160

Query: 1504 GN--KKLAVDDVMEAVLDQDKFRGITSRNQGDSFLAFLNRCGRGFNQKKYSDKEQEMSMS 1677
             N    L  DDV  A+L+++  R         S  A      RG + ++     Q    S
Sbjct: 161  NNITDTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRS 220

Query: 1678 RPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSANVAEQTDVCSDEELYTV 1857
            +   + K  ++ Y C  K H K +  ++KK  +K      +   VA  +D    E LY+ 
Sbjct: 221  K--SRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSD--DGEILYSE 276

Query: 1858 TENKVS*GDLLSVKDSSNIID*Y-MDFRCSFHMSPHMD*FDTFTSCNGGTILLGNNAVCK 2034
                       S K    + D + MD   ++HM+PH D F ++   + G++ +GN+   +
Sbjct: 277  AAT--------SSKGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALE 328

Query: 2035 VTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGCSISVRDGVMKITKVSMV 2214
            + G+GTI++KM DG V+ +  VR++  LKK+LLSVG LD +GC I    G++K+ K ++V
Sbjct: 329  IAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLV 388

Query: 2215 IMKG*K 2232
            +MK  K
Sbjct: 389  VMKAEK 394



 Score = 71.6 bits (174), Expect(5) = 0.0
 Identities = 42/95 (44%), Positives = 55/95 (57%)
 Frame = +3

Query: 2247 YKLIGDTIVGGTTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKFC 2426
            Y L+GDT+      S+  +S   +T +WH RLGH SE  +K L +R LL GLK   L   
Sbjct: 400  YMLLGDTLQEADA-SVAASSQEETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNL--- 455

Query: 2427 KFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVW 2531
             FC+ CV  KQ ++ F      SK+ILD +HSDVW
Sbjct: 456  PFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW 490



 Score = 70.9 bits (172), Expect(5) = 0.0
 Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
 Frame = +2

Query: 2552 MGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRLDNDTEYK 2722
            +G A YFVSFID+YS+++WVY +K+KS+   VFK  KA+IE    KK++  R DN  EY 
Sbjct: 497  LGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYI 556

Query: 2723 NRSFLQFCQDENI 2761
            +  FL FC+ E I
Sbjct: 557  DGEFLAFCKQEGI 569



 Score =  177 bits (450), Expect = 4e-41
 Identities = 119/320 (37%), Positives = 173/320 (54%), Gaps = 18/320 (5%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +L+    K  + +LK  L+ EF MKDLG A KILGM+IHRD +  K WL+QK Y++KVL 
Sbjct: 989  MLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVLR 1048

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQT---RME*NIFPNYRM--QM*WVV*CTPWYVQG 4373
            RFNM + K +STPL  +F+LSS +SP     RME +  P       + + + CT    + 
Sbjct: 1049 RFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICT----RP 1104

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSEVT--WFVDSDY 4547
             I+    V+   MA+ GKEH NAVK I RY+ GT+   + F     GSE+T   +VDSD+
Sbjct: 1105 DIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCF----GGSELTVRGYVDSDF 1160

Query: 4548 VGDLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAE----------SIWH*QMQAM 4697
             GD D  +S TG+V+T  G  + W S LQ+ VALSTTEAE          +IW    + M
Sbjct: 1161 AGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIW--MQRLM 1218

Query: 4698 RLCGLRD*LKNXXXXXXXXXXXXIVKAMFI*QRTR-CSMSGHKILE*LNNGDIAVRKVHT 4874
               G +   +             I +      RT+   +  H + E +  G + ++K+HT
Sbjct: 1219 EELGHKQ--EQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHT 1276

Query: 4875 KEIVADMLSKSVTTEKFKHC 4934
             + +AD+++K +  +KF  C
Sbjct: 1277 NDNLADVMTKPINADKFVWC 1296


>ACL97386.1 Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  241 bits (615), Expect(5) = e-180
 Identities = 134/315 (42%), Positives = 196/315 (62%), Gaps = 4/315 (1%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            R F V  TP+QNG+ ERMNRTLLER R M   A ++KSFWAEA  TACY INRSP   ID
Sbjct: 571  RQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAID 630

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P E+  GKP+D+S + +FG P YV    +++ +KLDP+ ++ IFLGY D VKGYRLW
Sbjct: 631  LKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQEK-TKLDPKSRKCIFLGYADNVKGYRLW 689

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKSGNEESAASELQKHLVEVEFLEEIKKK*RD*RXXXXX 3303
            +P ++  V+SRDVVF E  + ++  N+ ++    +  +V++E   +              
Sbjct: 690  DPTARKVVVSRDVVFAENELQSEQKNDSTSK---ETAIVQMEEKSKESDSSEAESVHEEQ 746

Query: 3304 XPREVL*SCERSGKASQQTS--TEI*V**HG--CLYLDCWYSGDPISYQNAIKSEDNDKW 3471
             P +V     RS + +Q+ S  ++  +  H   CL  +    G+P ++  A+   D  +W
Sbjct: 747  EPDDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCLITE---EGEPSTFHEALNGSDASQW 803

Query: 3472 SISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRKKETQSDKEGERFKARLMENRFSQ 3651
              +M +EME L +N+ WELV+LPKG KAI  KWV++ K   +D + ER++ARL+   ++Q
Sbjct: 804  MTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGND-QVERYRARLVVKGYAQ 862

Query: 3652 REGIEYNEIFSPVVK 3696
            +EGI++NEIFSPVV+
Sbjct: 863  KEGIDFNEIFSPVVR 877



 Score =  186 bits (471), Expect(5) = e-180
 Identities = 130/392 (33%), Positives = 199/392 (50%), Gaps = 17/392 (4%)
 Frame = +2

Query: 3698 TLIRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLY 3877
            T IR++L++  + D+ LEQLDVKT FLHG+LE++IY+  PEGF E  KE LV  L KSLY
Sbjct: 879  TTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLY 938

Query: 3878 GLKQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDD--IVDSSK-- 4045
            GLKQ+PR WY +FD+F+++  Y+R   D C Y++  D    ++L LYVDD  +V  +K  
Sbjct: 939  GLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDR 998

Query: 4046 -EEVRYSSVEEFVEQ*ILHEGSWFSQENPRYGNSQGLSGRKIVANSERICAEGLGEV*HE 4222
             +E++     EF  + +         +  R         RKI  + +    + L     +
Sbjct: 999  VQELKAQLAREFDMKDLGPANKILGMQIHR-----DRKDRKIWLSQKNYLRKVLRRFNMQ 1053

Query: 4223 QC*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVV 4402
             C      +   F++   + P+++     +S++ YA+ +G LMYAM+CTRP+I  A+ VV
Sbjct: 1054 DCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVV 1113

Query: 4403 SMY----GKFRERALK--------CCEMNFSLFSRYNQLWSYV*S*YCRK*GYMVC*FGL 4546
            S +    GK    A+K           +          +W YV S +           G 
Sbjct: 1114 SRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVWGYVDSDFAGDHDKRKSTTGY 1173

Query: 4547 CWRLRCNEIYDRVCIHLLWKMYMLEVSVAVYGSIINNRGREYMALTDASNEALWLKGLVE 4726
             + L    +         W +  L+  VA     ++    EYMA T A  EA+W++ L+E
Sbjct: 1174 VFTLAGGAV--------SW-LSKLQTVVA-----LSTTEAEYMAATQACKEAIWMQRLME 1219

Query: 4727 KLGFK*GSIQIQCDSQSDVHLAKNQVFHVRTQ 4822
            +LG K   I + CDSQS +H+A+N  FH RT+
Sbjct: 1220 ELGHKQEQITVYCDSQSALHIARNPAFHSRTK 1251



 Score =  159 bits (402), Expect(5) = e-180
 Identities = 110/366 (30%), Positives = 184/366 (50%), Gaps = 3/366 (0%)
 Frame = +1

Query: 1144 LANEKWTELEAKAVTTI*SN*V*RHISNIRF*QKPLRRTCGRNLRKFTSQSLCQTDYIWR 1323
            + +EKW E++  AV  +        +S+I   +K  +      ++ +  +SL    ++ R
Sbjct: 42   ITDEKWKEMDDNAVANLHLAMADSVLSSIAE-KKTAKEIWDTLIKLYEVKSLHNRIFLKR 100

Query: 1324 RNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLVLVSLPDSYSTIQTTLLI 1503
            R Y L+M E + +T+HIN  N L + LT+ D K+ +  +A L+L SLPDSY  +   +  
Sbjct: 101  RLYTLQMGESTSVTDHINTLNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITN 160

Query: 1504 GN--KKLAVDDVMEAVLDQDKFRGITSRNQGDSFLAFLNRCGRGFNQKKYSDKEQEMSMS 1677
             N    L  DDV  A+L+++  R         S  A      RG + ++     Q    S
Sbjct: 161  NNIADTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRS 220

Query: 1678 RPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSANVAEQTDVCSDEELYTV 1857
            +   + K  ++ Y C  K H K +  ++KK  +K      +   VA  +D    E LY+ 
Sbjct: 221  K--SRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSD--DGEILYSE 276

Query: 1858 TENKVS*GDLLSVKDSSNIID*Y-MDFRCSFHMSPHMD*FDTFTSCNGGTILLGNNAVCK 2034
                       S K    + D + MD   ++HM+PH D F ++   + G++ +GN+   +
Sbjct: 277  AAT--------SSKGERRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALE 328

Query: 2035 VTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGCSISVRDGVMKITKVSMV 2214
            + G+GTI++KM DG V+ +  VR++  LKK+LLSVG LD +GC I    G++K+ K ++V
Sbjct: 329  IAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLV 388

Query: 2215 IMKG*K 2232
            +MK  K
Sbjct: 389  VMKAEK 394



 Score = 72.0 bits (175), Expect(5) = e-180
 Identities = 43/95 (45%), Positives = 55/95 (57%)
 Frame = +3

Query: 2247 YKLIGDTIVGGTTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKFC 2426
            Y L+GDT+      S+   S   +T +WH RLGH SE  +K L +R LL GLKT  L   
Sbjct: 400  YMLLGDTLQEADA-SVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNL--- 455

Query: 2427 KFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVW 2531
             FC+ CV  KQ ++ F      SK+ILD +HSDVW
Sbjct: 456  PFCEHCVMSKQHRLKFARVTTRSKHILDLIHSDVW 490



 Score = 71.2 bits (173), Expect(5) = e-180
 Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
 Frame = +2

Query: 2552 MGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRLDNDTEYK 2722
            +G A YFVSFID+YS+++WVY +K+KS+   VFK  KA+IE    KK++  R DN  EY 
Sbjct: 497  LGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYV 556

Query: 2723 NRSFLQFCQDENI 2761
            +  FL FC+ E I
Sbjct: 557  DGEFLAFCKQEGI 569



 Score =  181 bits (458), Expect = 5e-42
 Identities = 121/320 (37%), Positives = 175/320 (54%), Gaps = 18/320 (5%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +L+    K  + +LK  L+ EF MKDLG A KILGM+IHRD +  K WL+QK Y++KVL 
Sbjct: 989  MLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLR 1048

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQT---RME*NIFPNYRM--QM*WVV*CTPWYVQG 4373
            RFNM + K +STPL  +F+LSS +SP     RME +  P       + + + CT    + 
Sbjct: 1049 RFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICT----RP 1104

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSEVT-W-FVDSDY 4547
             I+    V+   MA+ GKEH NAVK I RY+ GT+   + F     GSE+T W +VDSD+
Sbjct: 1105 DIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCF----GGSELTVWGYVDSDF 1160

Query: 4548 VGDLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAE----------SIWH*QMQAM 4697
             GD D  +S TG+V+T  G  + W S LQ+ VALSTTEAE          +IW    + M
Sbjct: 1161 AGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIW--MQRLM 1218

Query: 4698 RLCGLRD*LKNXXXXXXXXXXXXIVKAMFI*QRTR-CSMSGHKILE*LNNGDIAVRKVHT 4874
               G +   +             I +      RT+   +  H + E +  G + ++K+HT
Sbjct: 1219 EELGHKQ--EQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHT 1276

Query: 4875 KEIVADMLSKSVTTEKFKHC 4934
             + +AD+++K + T+KF  C
Sbjct: 1277 NDNLADVMTKPINTDKFVWC 1296


>CAH66122.1 OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  226 bits (575), Expect(6) = e-173
 Identities = 135/339 (39%), Positives = 190/339 (56%), Gaps = 27/339 (7%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            RH  +  TP+QNG+ ERMNRT++ RARCM  +A ++K FWAEA +TACY INRSP   ++
Sbjct: 576  RHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLN 635

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P EV SG P D+S +K+FG  AY H+       KL+PR  + +FLGY  GVKGY+LW
Sbjct: 636  KKTPIEVWSGTPADYSQLKVFGCTAYAHV----DNGKLEPRAVKCLFLGYGSGVKGYKLW 691

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKS-GNEESAASELQK-HL----------VEVEFLEEIK 3267
            NP +    +SR VVFNE  M   S  +E     ELQ+ H+          V+VE ++E  
Sbjct: 692  NPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVDEQD 751

Query: 3268 KK*RD*RXXXXXXP----------REVL*SCERSGKASQQTSTEI*V**HGCLY-LDCWY 3414
                D                    E L   +R  K + +    +    +   Y L C  
Sbjct: 752  DHNNDVADDDAHDDVQQTPPILQLEEDLSIAQRKSKRTTKPPKRLIEECNLSYYALSCAE 811

Query: 3415 S----GDPISYQNAIKSEDNDKWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRK 3582
                  +P +Y+ A++  D++ W  +M +EM+ L+KN  WE+V LPK  K I CKW+F++
Sbjct: 812  QVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKR 871

Query: 3583 KETQSDKEGERFKARLMENRFSQREGIEYNEIFSPVVKH 3699
            KE  S  E  ++KARL+   +SQ  G++YN++FSPVVKH
Sbjct: 872  KEALSLSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKH 910



 Score =  196 bits (498), Expect(6) = e-173
 Identities = 135/394 (34%), Positives = 209/394 (53%), Gaps = 21/394 (5%)
 Frame = +2

Query: 3704 IRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLYGL 3883
            IR  LSIV S D+ELEQLDVKT FLHG+LE+ IY+  PEGFI P KE  V  LK+SLYGL
Sbjct: 913  IRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGL 972

Query: 3884 KQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDDIVDSSKEEVRYS 4063
            KQSPR+W  +FD+FM+++ + RS YD CVY + H +GS + L LYVDD++ ++K ++  +
Sbjct: 973  KQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIK-HVNGSPIYLLLYVDDMLIAAKSKIEIT 1031

Query: 4064 SVEEFVEQ*ILHEGSWFSQENPRYGNSQGLSGRKI---------VANSERICAEGLGEV* 4216
             +++ +        S F  ++   G+++ + G +I           +      + L    
Sbjct: 1032 KLKKLL-------SSEFDMKD--LGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFN 1082

Query: 4217 HEQC*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAIS 4396
             +        +   F++     P+    +EY+S++ Y++ +G LMYAMVC+RP++ +A+S
Sbjct: 1083 MQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1142

Query: 4397 VVSMY----GKFRERA-------LKCCEMNFSLFSRYNQ-LWSYV*S*YCRK*GYMVC*F 4540
            +VS Y    GK   RA       L+    +   F R ++ L  YV S Y           
Sbjct: 1143 LVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADLDRR---- 1198

Query: 4541 GLCWRLRCNEIYDRVCIHLLWKMYMLEVSVAVYGSIINNRGREYMALTDASNEALWLKGL 4720
                R     ++      + W+  +  V        ++    EYMA+ +A  E +WLKGL
Sbjct: 1199 ----RSLTGYVFTIGSCAVSWRATLQSVVA------LSTTEAEYMAICEACKELIWLKGL 1248

Query: 4721 VEKLGFK*GSIQIQCDSQSDVHLAKNQVFHVRTQ 4822
              +L      I + CDSQS ++L K+Q+FH RT+
Sbjct: 1249 YAELSGVESCISLHCDSQSAIYLTKDQMFHERTK 1282



 Score =  133 bits (334), Expect(6) = e-173
 Identities = 91/307 (29%), Positives = 156/307 (50%), Gaps = 8/307 (2%)
 Frame = +1

Query: 1330 YRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLVLVSLPDSYSTIQTTLLIGN 1509
            + L+M+EE  +  HI EF +++  L S++VK D+E+  LL+L SLP+SY+  + T+L+  
Sbjct: 107  FTLKMKEEDSVITHIAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR 166

Query: 1510 KKLAVDDVMEAVLDQDKFRGITSRNQGDSF-----LAFLNRCGRGFNQKKYSDKEQEMSM 1674
             +L + +V +A+ +++K + I  +N G S      L    R     + +K  D+      
Sbjct: 167  DELTLKEVYDALQNKEKMK-IMVQNDGSSSSKGEALHVRGRTENKTSNEKNYDRRGRSKS 225

Query: 1675 SRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSANVAEQTDVCSDEELYT 1854
              PG K          H  D CK  +   +K NKK G     SA V++            
Sbjct: 226  KPPGNKKFCVYCKLKNHNIDECKKVQAKERK-NKKDGKVSVASAAVSDDDS--------- 275

Query: 1855 VTENKVS*GDLLSVKDS--SNIID*YMDFRCSFHMSPHMD*FDTFTSCNGGTIL-LGNNA 2025
                    GD L V     +   +  +D  CSFH+    + F ++     G ++ +G++ 
Sbjct: 276  --------GDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDN 327

Query: 2026 VCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGCSISVRDGVMKITKV 2205
             C + GIG++++K  DG+ + L +VRYIP + ++L+S+  LD+ G   S  DGV+K++K 
Sbjct: 328  PCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKG 387

Query: 2206 SMVIMKG 2226
            S+V +KG
Sbjct: 388  SLVCLKG 394



 Score = 77.0 bits (188), Expect(6) = e-173
 Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
 Frame = +3

Query: 2247 YKLIGDTIVGG-TTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKF 2423
            Y L G T+ G  +  +   N   + T LWHMRLGH S   M  L KR LL G  +  +KF
Sbjct: 402  YVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKF 461

Query: 2424 CKFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVWGRS 2540
            C+ C   ++ K ++V F    HT+K  LDYVH+D+WG S
Sbjct: 462  CEHC---IFGKHKRVQFNTSVHTTKGTLDYVHADLWGPS 497



 Score = 58.5 bits (140), Expect(6) = e-173
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2531 GPINHTLMGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRL 2701
            GP     +G A Y ++ ID+YS+KVW YF+K K +    FK  K  IE    +K++    
Sbjct: 495  GPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCT 554

Query: 2702 DNDTEYKNRSFLQFCQDENI 2761
            DN  E+ + +F  +C+ E I
Sbjct: 555  DNGGEFCSHAFNDYCRQEGI 574



 Score = 36.6 bits (83), Expect(6) = e-173
 Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
 Frame = +3

Query: 1011 SVRYEM*LFDGKSNFSIW*CTVKYVYIGSTSIDKGTRKEGEKPVIGK*KMDGT*SKGRDN 1190
            S+++++ L +  + FS+W   ++ +   +   D+           GK + + T  + R +
Sbjct: 2    SMKFDLPLLNYDTRFSLWQVNMRGILAQTHDYDEALDN------FGKRRAEWTAEEIRKD 55

Query: 1191 N----IIKLSLTPHLKY*VLTETSSKDLWEKLEKVYKSKSLSNRLYLEKEL 1331
                 +I+L L   +    LTE +S +LW KLE +  SK L++++ ++ +L
Sbjct: 56   QKALALIQLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKL 106



 Score =  198 bits (504), Expect = 2e-47
 Identities = 131/322 (40%), Positives = 181/322 (56%), Gaps = 12/322 (3%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +LIAAK K +I +LK LLSSEF MKDLGSAKKILGMEI RD ++G  +L+Q  Y++KVL+
Sbjct: 1020 MLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQ 1079

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQTRME*NIFPNYRMQ-----M*WVV*CTPWYVQG 4373
            RFNM NAK VSTP+A HF+LS+   P T  E               + + + C+    + 
Sbjct: 1080 RFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCS----RP 1135

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSEVTWFVDSDYVG 4553
             +SY  S++   M+N GKEH  A++ IFRYL GTT   L F R   G  +  +VDSDY  
Sbjct: 1136 DLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAA 1193

Query: 4554 DLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAE--SIWH*QMQAMRLCGLRD*LK 4727
            DLD  RS+TG+V+T     + WR+ LQS VALSTTEAE  +I     + + L GL   L 
Sbjct: 1194 DLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELS 1253

Query: 4728 NXXXXXXXXXXXX----IVKAMFI*QRTR-CSMSGHKILE*LNNGDIAVRKVHTKEIVAD 4892
                             + K     +RT+   +  H + + +  G + V K+ T +  AD
Sbjct: 1254 GVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPAD 1313

Query: 4893 MLSKSVTTEKFKHCLDLIHFVE 4958
            M++K +   KF+ C  L+  +E
Sbjct: 1314 MMTKPIPVAKFELCSSLVGLIE 1335


>AAX92861.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] ABA92739.1 retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1373

 Score =  226 bits (576), Expect(6) = e-173
 Identities = 135/339 (39%), Positives = 189/339 (55%), Gaps = 27/339 (7%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            RH  +  TP+QNG+ ERMNRT++ RARCM  +A ++K FWAEA +TACY INRSP   ++
Sbjct: 574  RHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLN 633

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P EV SG P D+S +K+FG  AY H+       KL+PR  + +FLGY  GVKGY+LW
Sbjct: 634  KKTPIEVWSGTPADYSQLKVFGCTAYAHV----DNGKLEPRAVKCLFLGYGSGVKGYKLW 689

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKS-GNEESAASELQK-HL----------VEVEFLEEIK 3267
            NP +    +SR VVFNE  M   S  +E     ELQ+ H+          V+VE + E  
Sbjct: 690  NPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQD 749

Query: 3268 KK*RD*RXXXXXXP----------REVL*SCERSGKASQQTSTEI*V**HGCLY-LDCWY 3414
                D                    E L   +R  K + +    +    +   Y L C  
Sbjct: 750  DHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAE 809

Query: 3415 S----GDPISYQNAIKSEDNDKWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRK 3582
                  +P +Y+ A++  D++ W  +M +EM+ L+KN  WE+V LPK  K I CKW+F++
Sbjct: 810  QVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKR 869

Query: 3583 KETQSDKEGERFKARLMENRFSQREGIEYNEIFSPVVKH 3699
            KE  S  E  ++KARL+   +SQ  G++YN++FSPVVKH
Sbjct: 870  KEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKH 908



 Score =  194 bits (493), Expect(6) = e-173
 Identities = 134/394 (34%), Positives = 209/394 (53%), Gaps = 21/394 (5%)
 Frame = +2

Query: 3704 IRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLYGL 3883
            IR  LSIV S D+ELEQLDVKT FLHG+LE+ IY+  PEGFI P KE  V  LK+SLYGL
Sbjct: 911  IRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGL 970

Query: 3884 KQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDDIVDSSKEEVRYS 4063
            KQSPR+W  +FD+FM+++ + RS YD CVY + H +GS + L LYVDD++ ++K ++  +
Sbjct: 971  KQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIK-HVNGSPIYLLLYVDDMLIAAKSKIEIT 1029

Query: 4064 SVEEFVEQ*ILHEGSWFSQENPRYGNSQGLSGRKI---------VANSERICAEGLGEV* 4216
             +++ +        S F  ++   G+++ + G +I           +      + L    
Sbjct: 1030 KLKKLL-------SSEFDMKD--LGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFN 1080

Query: 4217 HEQC*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAIS 4396
             +        +   F++     P+    +EY+S++ Y++ +G LMYAMVC+RP++ +A+S
Sbjct: 1081 MQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1140

Query: 4397 VVSMY----GKFRERA-------LKCCEMNFSLFSRYNQ-LWSYV*S*YCRK*GYMVC*F 4540
            +VS Y    GK   RA       L+    +   F R ++ L  YV S Y           
Sbjct: 1141 LVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADLDRR---- 1196

Query: 4541 GLCWRLRCNEIYDRVCIHLLWKMYMLEVSVAVYGSIINNRGREYMALTDASNEALWLKGL 4720
                R     ++      + W+  +  V        ++    EYMA+ +A  E +WLKGL
Sbjct: 1197 ----RSLTGYVFTIGSCAVSWRATLQSVVA------LSTTEAEYMAICEACKELIWLKGL 1246

Query: 4721 VEKLGFK*GSIQIQCDSQSDVHLAKNQVFHVRTQ 4822
              +L      I + CDS+S ++L K+Q+FH RT+
Sbjct: 1247 YAELSGVESCISLHCDSESAIYLTKDQMFHERTK 1280



 Score =  132 bits (332), Expect(6) = e-173
 Identities = 89/307 (28%), Positives = 161/307 (52%), Gaps = 8/307 (2%)
 Frame = +1

Query: 1330 YRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLVLVSLPDSYSTIQTTLLIGN 1509
            + L+M+EE  +  H+ EF +++  L S++VK D+E+  LL+L SLP+SY+  + T+L+  
Sbjct: 105  FTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR 164

Query: 1510 KKLAVDDVMEAVLDQDKFRGI-----TSRNQGDSFLAFLNRCGRGFNQKKYSDKEQEMSM 1674
             +L + +V +A+ +++K + +     +S ++G++         R  N+K Y D+      
Sbjct: 165  DELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNY-DRRGRSKS 223

Query: 1675 SRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSANVAEQTDVCSDEELYT 1854
              PG K          H  D CK  +   +K NKK G        V+  +   SD++   
Sbjct: 224  KPPGNKKFCVYCKLKNHNIDECKKVQAKERK-NKKDGK-------VSVASAAASDDDS-- 273

Query: 1855 VTENKVS*GDLLSVKDS--SNIID*YMDFRCSFHMSPHMD*FDTFTSCNGGTIL-LGNNA 2025
                    GD L V     +   +  +D  CSFH+    + F ++     G ++ +G++ 
Sbjct: 274  --------GDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDN 325

Query: 2026 VCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGCSISVRDGVMKITKV 2205
             C + GIG++++K  DG+ + L +VRYIP + ++L+S+  LD+ G   S  DGV+K++K 
Sbjct: 326  PCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKG 385

Query: 2206 SMVIMKG 2226
            S+V +KG
Sbjct: 386  SLVCLKG 392



 Score = 77.8 bits (190), Expect(6) = e-173
 Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
 Frame = +3

Query: 2247 YKLIGDTIVGG-TTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKF 2423
            Y L G T+ G  +  +   N   + T LWHMRLGH S   M  L KR LL G  +  +KF
Sbjct: 400  YVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459

Query: 2424 CKFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVWGRS 2540
            C+ C   ++ K ++V F    HT+K  LDYVH+D+WG S
Sbjct: 460  CEHC---IFGKHKRVQFNTSVHTTKGTLDYVHADLWGPS 495



 Score = 61.6 bits (148), Expect(6) = e-173
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2531 GPINHTLMGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRL 2701
            GP     +G A Y ++ ID+YS+KVW YF+K K +    FK  K  IE    +K++  R 
Sbjct: 493  GPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRT 552

Query: 2702 DNDTEYKNRSFLQFCQDENI 2761
            DN  E+ + +F  +C+ E I
Sbjct: 553  DNGGEFCSHAFNDYCRQEGI 572



 Score = 34.7 bits (78), Expect(6) = e-173
 Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
 Frame = +3

Query: 1014 VRYEM*LFDGKSNFSIW*CTVKYVYIGSTSIDKGTRKEGEKPVIGK*KMDGT*SKGRDNN 1193
            +++++ L +  + FS+W   ++ +   +   D+           GK + + T  + R + 
Sbjct: 1    MKFDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDN------FGKRRAEWTAEEIRKDQ 54

Query: 1194 ----IIKLSLTPHLKY*VLTETSSKDLWEKLEKVYKSKSLSNRLYLEKEL 1331
                +I+L L   +    LTE +S +LW KLE +  SK L++++ ++ +L
Sbjct: 55   KALALIQLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKL 104


>ABA98804.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  226 bits (576), Expect(6) = e-173
 Identities = 135/339 (39%), Positives = 189/339 (55%), Gaps = 27/339 (7%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            RH  +  TP+QNG+ ERMNRT++ RARCM  +A ++K FWAEA +TACY INRSP   ++
Sbjct: 574  RHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLN 633

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P EV SG P D+S +K+FG  AY H+       KL+PR  + +FLGY  GVKGY+LW
Sbjct: 634  KKTPIEVWSGTPADYSQLKVFGCTAYAHV----DNGKLEPRAVKCLFLGYGSGVKGYKLW 689

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKS-GNEESAASELQK-HL----------VEVEFLEEIK 3267
            NP +    +SR VVFNE  M   S  +E     ELQ+ H+          V+VE + E  
Sbjct: 690  NPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDYTGVQVEPVHEQD 749

Query: 3268 KK*RD*RXXXXXXP----------REVL*SCERSGKASQQTSTEI*V**HGCLY-LDCWY 3414
                D                    E L   +R  K + +    +    +   Y L C  
Sbjct: 750  DHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAE 809

Query: 3415 S----GDPISYQNAIKSEDNDKWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRK 3582
                  +P +Y+ A++  D++ W  +M +EM+ L+KN  WE+V LPK  K I CKW+F++
Sbjct: 810  QVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKR 869

Query: 3583 KETQSDKEGERFKARLMENRFSQREGIEYNEIFSPVVKH 3699
            KE  S  E  ++KARL+   +SQ  G++YN++FSPVVKH
Sbjct: 870  KEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKH 908



 Score =  194 bits (492), Expect(6) = e-173
 Identities = 130/385 (33%), Positives = 203/385 (52%), Gaps = 12/385 (3%)
 Frame = +2

Query: 3704 IRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLYGL 3883
            IR  LSIV S D+ELEQLDVKT FLHG+LE+ IY+  PEGFI P KE  V  LK+SLYGL
Sbjct: 911  IRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGL 970

Query: 3884 KQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDDIVDSSKEEVRYS 4063
            KQSPR+W  +FD+FM+++ + RS YD CVY + H +GS + L LYVDD++ ++K ++  +
Sbjct: 971  KQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIK-HVNGSPIYLLLYVDDMLIAAKSKIEIT 1029

Query: 4064 SVEEFVEQ*ILHEGSWFSQENPRYGNSQGLSGRKIVANSERICAEGLGEV*HEQC*TS*H 4243
             +++ +      +    +++      S+      +  +      + L     +       
Sbjct: 1030 KLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVST 1089

Query: 4244 SVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVVSMY---- 4411
             +   F++     P+    +EY+S++ Y++ +G LMYAMVC+RP++ +A+S+VS Y    
Sbjct: 1090 PIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNP 1149

Query: 4412 GKFRERA-------LKCCEMNFSLFSRYNQ-LWSYV*S*YCRK*GYMVC*FGLCWRLRCN 4567
            GK   R        L+    +   F R ++ L  YV S Y               R    
Sbjct: 1150 GKEHWRVVQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADLDRR--------RSLTG 1201

Query: 4568 EIYDRVCIHLLWKMYMLEVSVAVYGSIINNRGREYMALTDASNEALWLKGLVEKLGFK*G 4747
             ++      + W+  +  V        ++    EYMA+ +A  E +WLKGL  +L     
Sbjct: 1202 YVFTIGSCAVSWRATLQSVVA------LSTTEAEYMAICEACKELIWLKGLYAELSGVES 1255

Query: 4748 SIQIQCDSQSDVHLAKNQVFHVRTQ 4822
             I + CDSQS ++L K+Q+FH RT+
Sbjct: 1256 CISLHCDSQSAIYLTKDQMFHERTK 1280



 Score =  132 bits (332), Expect(6) = e-173
 Identities = 89/307 (28%), Positives = 161/307 (52%), Gaps = 8/307 (2%)
 Frame = +1

Query: 1330 YRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLVLVSLPDSYSTIQTTLLIGN 1509
            + L+M+EE  +  H+ EF +++  L S++VK D+E+  LL+L SLP+SY+  + T+L+  
Sbjct: 105  FTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR 164

Query: 1510 KKLAVDDVMEAVLDQDKFRGI-----TSRNQGDSFLAFLNRCGRGFNQKKYSDKEQEMSM 1674
             +L + +V +A+ +++K + +     +S ++G++         R  N+K Y D+      
Sbjct: 165  DELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNY-DRRGRSKS 223

Query: 1675 SRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSANVAEQTDVCSDEELYT 1854
              PG K          H  D CK  +   +K NKK G        V+  +   SD++   
Sbjct: 224  KPPGNKKFCVYCKLKNHNIDECKKVQAKERK-NKKDGK-------VSVASAAASDDDS-- 273

Query: 1855 VTENKVS*GDLLSVKDS--SNIID*YMDFRCSFHMSPHMD*FDTFTSCNGGTIL-LGNNA 2025
                    GD L V     +   +  +D  CSFH+    + F ++     G ++ +G++ 
Sbjct: 274  --------GDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDN 325

Query: 2026 VCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGCSISVRDGVMKITKV 2205
             C + GIG++++K  DG+ + L +VRYIP + ++L+S+  LD+ G   S  DGV+K++K 
Sbjct: 326  PCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKG 385

Query: 2206 SMVIMKG 2226
            S+V +KG
Sbjct: 386  SLVCLKG 392



 Score = 77.8 bits (190), Expect(6) = e-173
 Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
 Frame = +3

Query: 2247 YKLIGDTIVGG-TTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKF 2423
            Y L G T+ G  +  +   N   + T LWHMRLGH S   M  L KR LL G  +  +KF
Sbjct: 400  YVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459

Query: 2424 CKFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVWGRS 2540
            C+ C   ++ K ++V F    HT+K  LDYVH+D+WG S
Sbjct: 460  CEHC---IFGKHKRVQFNTSVHTTKGTLDYVHADLWGPS 495



 Score = 61.6 bits (148), Expect(6) = e-173
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2531 GPINHTLMGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRL 2701
            GP     +G A Y ++ ID+YS+KVW YF+K K +    FK  K  IE    +K++  R 
Sbjct: 493  GPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRT 552

Query: 2702 DNDTEYKNRSFLQFCQDENI 2761
            DN  E+ + +F  +C+ E I
Sbjct: 553  DNGGEFCSHAFNDYCRQEGI 572



 Score = 34.7 bits (78), Expect(6) = e-173
 Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
 Frame = +3

Query: 1014 VRYEM*LFDGKSNFSIW*CTVKYVYIGSTSIDKGTRKEGEKPVIGK*KMDGT*SKGRDNN 1193
            +++++ L +  + FS+W   ++ +   +   D+           GK + + T  + R + 
Sbjct: 1    MKFDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDN------FGKRRAEWTAEEIRKDQ 54

Query: 1194 ----IIKLSLTPHLKY*VLTETSSKDLWEKLEKVYKSKSLSNRLYLEKEL 1331
                +I+L L   +    LTE +S +LW KLE +  SK L++++ ++ +L
Sbjct: 55   KALALIQLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKL 104



 Score =  195 bits (496), Expect = 2e-46
 Identities = 130/322 (40%), Positives = 179/322 (55%), Gaps = 12/322 (3%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +LIAAK K +I +LK LLSSEF MKDLGSAKKIL MEI RD ++G  +L+Q  Y++KVL+
Sbjct: 1018 MLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQ 1077

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQTRME*NIFPNYRMQ-----M*WVV*CTPWYVQG 4373
            RFNM NAK VSTP+A HF+LS+   P T  E               + + + C+    + 
Sbjct: 1078 RFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCS----RP 1133

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSEVTWFVDSDYVG 4553
             +SY  S++   M+N GKEH   V+ IFRYL GTT   L F R   G  +  +VDSDY  
Sbjct: 1134 DLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAA 1191

Query: 4554 DLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAE--SIWH*QMQAMRLCGLRD*LK 4727
            DLD  RS+TG+V+T     + WR+ LQS VALSTTEAE  +I     + + L GL   L 
Sbjct: 1192 DLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELS 1251

Query: 4728 NXXXXXXXXXXXX----IVKAMFI*QRTR-CSMSGHKILE*LNNGDIAVRKVHTKEIVAD 4892
                             + K     +RT+   +  H + + +  G + V K+ T +  AD
Sbjct: 1252 GVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPAD 1311

Query: 4893 MLSKSVTTEKFKHCLDLIHFVE 4958
            M++K +   KF+ C  L+  +E
Sbjct: 1312 MMTKPIPVAKFELCSSLVGLIE 1333


>ABA98656.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  226 bits (576), Expect(6) = e-172
 Identities = 135/339 (39%), Positives = 189/339 (55%), Gaps = 27/339 (7%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            RH  +  TP+QNG+ ERMNRT++ RARCM  +A ++K FWAEA +TACY INRSP   ++
Sbjct: 574  RHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLN 633

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P EV SG P D+S +K+FG  AY H+       KL+PR  + +FLGY  GVKGY+LW
Sbjct: 634  KKTPIEVWSGMPADYSQLKVFGCTAYAHV----DNGKLEPRAVKCLFLGYGSGVKGYKLW 689

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKS-GNEESAASELQK-HL----------VEVEFLEEIK 3267
            NP +    +SR VVFNE  M   S  +E     ELQ+ H+          V+VE + E  
Sbjct: 690  NPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQD 749

Query: 3268 KK*RD*RXXXXXXP----------REVL*SCERSGKASQQTSTEI*V**HGCLY-LDCWY 3414
                D                    E L   +R  K + +    +    +   Y L C  
Sbjct: 750  DHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAE 809

Query: 3415 S----GDPISYQNAIKSEDNDKWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRK 3582
                  +P +Y+ A++  D++ W  +M +EM+ L+KN  WE+V LPK  K I CKW+F++
Sbjct: 810  QVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKR 869

Query: 3583 KETQSDKEGERFKARLMENRFSQREGIEYNEIFSPVVKH 3699
            KE  S  E  ++KARL+   +SQ  G++YN++FSPVVKH
Sbjct: 870  KEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKH 908



 Score =  195 bits (496), Expect(6) = e-172
 Identities = 135/394 (34%), Positives = 209/394 (53%), Gaps = 21/394 (5%)
 Frame = +2

Query: 3704 IRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLYGL 3883
            IR  LSIV S D+ELEQLDVKT FLHG+LE+ IY+  PEGFI P KE  V  LK+SLYGL
Sbjct: 911  IRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGL 970

Query: 3884 KQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDDIVDSSKEEVRYS 4063
            KQSPR+W  +FD+FM+++ + RS YD CVY + H +GS + L LYVDD++ ++K ++  +
Sbjct: 971  KQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIK-HVNGSPIYLLLYVDDMLIAAKSKIEIT 1029

Query: 4064 SVEEFVEQ*ILHEGSWFSQENPRYGNSQGLSGRKI---------VANSERICAEGLGEV* 4216
             +++ +        S F  ++   G+++ + G +I           +      + L    
Sbjct: 1030 KLKKLL-------SSEFDMKD--LGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFN 1080

Query: 4217 HEQC*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAIS 4396
             +        +   F++     P+    +EY+S++ Y++ +G LMYAMVC+RP++ +A+S
Sbjct: 1081 MQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1140

Query: 4397 VVSMY----GKFRERA-------LKCCEMNFSLFSRYNQ-LWSYV*S*YCRK*GYMVC*F 4540
            +VS Y    GK   RA       L+    +   F R ++ L  YV S Y           
Sbjct: 1141 LVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADLDRR---- 1196

Query: 4541 GLCWRLRCNEIYDRVCIHLLWKMYMLEVSVAVYGSIINNRGREYMALTDASNEALWLKGL 4720
                R     ++      + W+  +  V        ++    EYMA+ +A  E +WLKGL
Sbjct: 1197 ----RSLTGYVFTIGSCAVSWRATLQSVVA------LSTTEAEYMAICEACKELIWLKGL 1246

Query: 4721 VEKLGFK*GSIQIQCDSQSDVHLAKNQVFHVRTQ 4822
              +L      I + CDSQS ++L K+Q+FH RT+
Sbjct: 1247 YAELSGVESCISLHCDSQSAIYLTKDQMFHERTK 1280



 Score =  132 bits (332), Expect(6) = e-172
 Identities = 89/307 (28%), Positives = 161/307 (52%), Gaps = 8/307 (2%)
 Frame = +1

Query: 1330 YRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLVLVSLPDSYSTIQTTLLIGN 1509
            + L+M+EE  +  H+ EF +++  L S++VK D+E+  LL+L SLP+SY+  + T+L+  
Sbjct: 105  FTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR 164

Query: 1510 KKLAVDDVMEAVLDQDKFRGI-----TSRNQGDSFLAFLNRCGRGFNQKKYSDKEQEMSM 1674
             +L + +V +A+ +++K + +     +S ++G++         R  N+K Y D+      
Sbjct: 165  DELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNY-DRRGRSKS 223

Query: 1675 SRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSANVAEQTDVCSDEELYT 1854
              PG K          H  D CK  +   +K NKK G        V+  +   SD++   
Sbjct: 224  KPPGNKKFCVYCKLKNHNIDECKKVQAKERK-NKKDGK-------VSVASAAASDDDS-- 273

Query: 1855 VTENKVS*GDLLSVKDS--SNIID*YMDFRCSFHMSPHMD*FDTFTSCNGGTIL-LGNNA 2025
                    GD L V     +   +  +D  CSFH+    + F ++     G ++ +G++ 
Sbjct: 274  --------GDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDN 325

Query: 2026 VCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGCSISVRDGVMKITKV 2205
             C + GIG++++K  DG+ + L +VRYIP + ++L+S+  LD+ G   S  DGV+K++K 
Sbjct: 326  PCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKG 385

Query: 2206 SMVIMKG 2226
            S+V +KG
Sbjct: 386  SLVCLKG 392



 Score = 77.8 bits (190), Expect(6) = e-172
 Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
 Frame = +3

Query: 2247 YKLIGDTIVGG-TTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKF 2423
            Y L G T+ G  +  +   N   + T LWHMRLGH S   M  L KR LL G  +  +KF
Sbjct: 400  YVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459

Query: 2424 CKFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVWGRS 2540
            C+ C   ++ K ++V F    HT+K  LDYVH+D+WG S
Sbjct: 460  CEHC---IFGKHKRVQFNTSVHTTKGTLDYVHADLWGPS 495



 Score = 61.2 bits (147), Expect(6) = e-172
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2531 GPINHTLMGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRL 2701
            GP     +G A Y ++ ID+YS+KVW YF+K K +    FK  K  IE    +K++  R 
Sbjct: 493  GPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRT 552

Query: 2702 DNDTEYKNRSFLQFCQDENI 2761
            DN  E+ + +F  +C+ E I
Sbjct: 553  DNGGEFCSHAFNDYCRQEGI 572



 Score = 30.4 bits (67), Expect(6) = e-172
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 1194 IIKLSLTPHLKY*VLTETSSKDLWEKLEKVYKSKSLSNRLYLEKEL 1331
            +I+L L   +    L E +S +LW KLE +  SK L++++ ++ +L
Sbjct: 59   LIQLHLHNDILQECLIEKTSAELWLKLESICMSKDLTSKMQMKMKL 104



 Score =  198 bits (503), Expect = 2e-47
 Identities = 131/322 (40%), Positives = 180/322 (55%), Gaps = 12/322 (3%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +LIAAK K +I +LK LLSSEF MKDLGSAKKILGMEI RD ++G  +L+Q  Y++KVL+
Sbjct: 1018 MLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQ 1077

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQTRME*NIFPNYRMQ-----M*WVV*CTPWYVQG 4373
            RFNM NAK VSTP+A HF+LS+   P    E               + + + C+    + 
Sbjct: 1078 RFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCS----RP 1133

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSEVTWFVDSDYVG 4553
             +SY  S++   M+N GKEH  AV+ IFRYL GTT   L F R   G  +  +VDSDY  
Sbjct: 1134 DLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAA 1191

Query: 4554 DLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAE--SIWH*QMQAMRLCGLRD*LK 4727
            DLD  RS+TG+V+T     + WR+ LQS VALSTTEAE  +I     + + L GL   L 
Sbjct: 1192 DLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELS 1251

Query: 4728 NXXXXXXXXXXXX----IVKAMFI*QRTR-CSMSGHKILE*LNNGDIAVRKVHTKEIVAD 4892
                             + K     +RT+   +  H + + +  G + V K+ T +  AD
Sbjct: 1252 GVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPAD 1311

Query: 4893 MLSKSVTTEKFKHCLDLIHFVE 4958
            M++K +   KF+ C  L+  +E
Sbjct: 1312 MMTKPIPVAKFELCSSLVGLIE 1333


>KYP42748.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  234 bits (596), Expect(5) = e-166
 Identities = 135/327 (41%), Positives = 190/327 (58%), Gaps = 16/327 (4%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            R F V  TP+QNG+ ERMNRTLLER R M   A L+KSFWAEA+ TACY INRSP   I 
Sbjct: 570  RQFTVAHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIG 629

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P E+ +GKP ++S + +FG P YV    ++R +KLDP+ ++ IFLGY D VKGYRLW
Sbjct: 630  LKTPMEMWNGKPSNYSSLHVFGCPVYVMYNSQER-TKLDPKSRKCIFLGYADNVKGYRLW 688

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKSGNEESAASELQKHLVEVEFLEEIKKK*RD*RXXXXX 3303
            +P ++  V+SRDVVF E  +  +  N+ +         ++   + EI  K +        
Sbjct: 689  DPTARKVVVSRDVVFAETELQKEQENDST---------IKDTSIVEIGGKSKKDDTSEAE 739

Query: 3304 XPREVL*SCERSGKASQQTSTEI*V**HGCLYLDCWYS----------------GDPISY 3435
               E     E + +  QQ   E             W+S                G+P ++
Sbjct: 740  QEHEEQEPDEANDEEVQQIRRE--------RRRPSWHSDYVMASHDAYCLLTEEGEPSTF 791

Query: 3436 QNAIKSEDNDKWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRKKETQSDKEGER 3615
            Q A++S D  +W  +M +E+E L +N+ WELV LPKG KAI CKWV++ K   +D + ER
Sbjct: 792  QEALRSSDVSQWMAAMHEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDGND-QVER 850

Query: 3616 FKARLMENRFSQREGIEYNEIFSPVVK 3696
            ++ARL+   ++Q+EGI++NEIFSPVV+
Sbjct: 851  YRARLVVKGYAQKEGIDFNEIFSPVVR 877



 Score =  155 bits (392), Expect(5) = e-166
 Identities = 112/386 (29%), Positives = 198/386 (51%), Gaps = 4/386 (1%)
 Frame = +1

Query: 1087 ILAQQVLTKALERKEKNQ*LANEKWTELEAKAVTTI*SN*V*RHISNIRF*QKPLRRTCG 1266
            IL +    KA+E +  +  + +EKW E++  AV  +        +S+I   +K   +   
Sbjct: 25   ILRKDNCLKAIEGRPSD--ITDEKWREMDDNAVANLHLAMADSVLSSIA--EKTTAKEIW 80

Query: 1267 RNLRK-FTSQSLCQTDYIWRRNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKA 1443
              L K +  +SL    ++ R+ Y LRM E + +T+HIN  N L   L++ D  + E  +A
Sbjct: 81   DTLVKLYEVKSLHTRIFLKRKLYTLRMSESTAVTDHINNLNTLFAQLSTADFNIVENERA 140

Query: 1444 LLVLVSLPDSYSTIQTTLLIGNK--KLAVDDVMEAVLDQDKFRGITSRNQGDSFLAFLNR 1617
             L+L SLPDSY  +   +   N   +L+ +DV  A+L+++  R         S  A    
Sbjct: 141  ELLLQSLPDSYDQLIINITNNNVVGRLSFEDVAGAILEEESRRKNKEDRLESSKQAEALT 200

Query: 1618 CGRGFNQKKYSDKEQEMSMSRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIE 1797
              RG + ++ S   Q    S+   + +  ++ Y+C  + H K      K    KK    +
Sbjct: 201  MMRGRSMERGSSGSQNHGRSK--SRGRKNLKCYNCGMRGHMK------KDCWHKKSGGGK 252

Query: 1798 NSANVAEQTDVCSDEELYTVTENKVS*GDLLSVKDSSNIID*Y-MDFRCSFHMSPHMD*F 1974
            NS     Q  V S +E     + ++   + +S +    + + + +D   ++HM+P+ D F
Sbjct: 253  NSEASTSQGCVASTQE-----DGEILYSEAISSRGEKQLHECWILDSGATWHMTPNRDWF 307

Query: 1975 DTFTSCNGGTILLGNNAVCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDS 2154
             T+ S +GG++ +GN+   ++ G+GTIK+KM+DG ++ +  VR++  LKK+LLS+G LD 
Sbjct: 308  CTYESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVRHVKGLKKNLLSIGQLDD 367

Query: 2155 IGCSISVRDGVMKITKVSMVIMKG*K 2232
            + C I V  G++K+ K ++V+MK  K
Sbjct: 368  LKCKIHVEGGILKVVKGNLVVMKAEK 393



 Score =  150 bits (379), Expect(5) = e-166
 Identities = 85/242 (35%), Positives = 139/242 (57%), Gaps = 4/242 (1%)
 Frame = +2

Query: 3698 TLIRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLY 3877
            T IR++L++  + ++ LEQLDVKT FLHG+L+++IY+  PEGF E  KE LV  L KSLY
Sbjct: 879  TTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKENLVCRLTKSLY 938

Query: 3878 GLKQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDD--IVDSSKEE 4051
            GLKQ+PR WY +FD+F+++ GY+R   D C Y+   DD   ++L LYVDD  +V  +K++
Sbjct: 939  GLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDMLVVGPNKDQ 998

Query: 4052 VRYSSVEEFVEQ*ILHEGSWFSQENPRYGNS--QGLSGRKIVANSERICAEGLGEV*HEQ 4225
            ++    +   E     +       N   G    +    R+I  + +    + L     + 
Sbjct: 999  IQELKAQLARE----FDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRFNMQD 1054

Query: 4226 C*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVVS 4405
            C      +   +++  ++ P+++     +S++ YA+ +G LMYAM+CTRP+I  A+  VS
Sbjct: 1055 CKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGAVS 1114

Query: 4406 MY 4411
             +
Sbjct: 1115 RF 1116



 Score = 74.3 bits (181), Expect(5) = e-166
 Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
 Frame = +2

Query: 2552 MGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRLDNDTEYK 2722
            MG A YFVSFID+YS+++WVY +K+KS+   VFK+ KA++E   GK+++  R DN  EY 
Sbjct: 496  MGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYI 555

Query: 2723 NRSFLQFCQDENI 2761
            +  FL FC+ E I
Sbjct: 556  DGDFLAFCKQEGI 568



 Score = 68.2 bits (165), Expect(5) = e-166
 Identities = 41/95 (43%), Positives = 54/95 (56%)
 Frame = +3

Query: 2247 YKLIGDTIVGGTTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKFC 2426
            Y L+G+T+      S+   S   +T +WH RLGH SE  +K L +R LL GLK   L   
Sbjct: 399  YLLLGETLQEADA-SVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTL--- 454

Query: 2427 KFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVW 2531
             FC+ CV  KQ ++ F      SK+ILD +HSDVW
Sbjct: 455  PFCEHCVTSKQHRLQFAKVTTRSKHILDLIHSDVW 489



 Score =  178 bits (451), Expect = 3e-41
 Identities = 120/319 (37%), Positives = 177/319 (55%), Gaps = 14/319 (4%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +L+    K  I +LK  L+ EF MKDLG A KILGM+IHRD +  + WL+QK Y+ KVL 
Sbjct: 989  MLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLR 1048

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQT---RME*NIFPNYRM--QM*WVV*CTPWYVQG 4373
            RFNM + K +STPL  +++LSS +SP     RME +  P       + + + CT    + 
Sbjct: 1049 RFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICT----RP 1104

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSE--VTWFVDSDY 4547
             I+     +   MA+ G+EH + VK I RY+ GT++  L F+    GSE  V  +VDSD+
Sbjct: 1105 DIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFE----GSEFFVRGYVDSDF 1160

Query: 4548 VGDLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAESIWH*Q--MQAMRLCGLRD* 4721
             GDLD  +S TG+V+T  G  + W S LQ+ VALSTTEAE +   Q   +A+ +  L + 
Sbjct: 1161 AGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEE 1220

Query: 4722 L----KNXXXXXXXXXXXXIVKAMFI*QRTR-CSMSGHKILE*LNNGDIAVRKVHTKEIV 4886
            L    +             I +      RT+   +  H + E +  G + ++K+HTK+ +
Sbjct: 1221 LGHKQEKITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNI 1280

Query: 4887 ADMLSKSVTTEKFKHCLDL 4943
            AD+++K V T+KF  C  L
Sbjct: 1281 ADVMTKPVNTDKFTWCRSL 1299


>KYP53032.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  233 bits (593), Expect(5) = e-165
 Identities = 135/327 (41%), Positives = 189/327 (57%), Gaps = 16/327 (4%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            R F V  TP+QNG+ ERMNRTLLER R M   A L+KSFWAEA+ TACY INRSP   I 
Sbjct: 570  RQFTVAHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIG 629

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P E+ SGKP ++S + +FG P YV    ++R +KLDP+ ++ IFLGY D VKGYRLW
Sbjct: 630  LKTPMEMWSGKPSNYSSLHVFGCPVYVMYNSQER-TKLDPKSRKCIFLGYADNVKGYRLW 688

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKSGNEESAASELQKHLVEVEFLEEIKKK*RD*RXXXXX 3303
            +P ++  V+SRDVVF E  +  +  N+ +         ++   + EI  K +        
Sbjct: 689  DPTARKVVVSRDVVFAETELQKEQENDST---------IKDTSIVEIGGKSKKDDTSEAE 739

Query: 3304 XPREVL*SCERSGKASQQTSTEI*V**HGCLYLDCWYS----------------GDPISY 3435
               E     E + +  QQ   E             W+S                G+P ++
Sbjct: 740  QEHEEQEPDEANDEEVQQIRRE--------RRRPSWHSDYVMASHDAYCLLTEEGEPSTF 791

Query: 3436 QNAIKSEDNDKWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRKKETQSDKEGER 3615
            Q A++S D  +W  +M +E+E L +N+ WELV LPKG KAI CKWV++ K   +D + ER
Sbjct: 792  QEALRSSDVSQWMAAMHEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDGND-QVER 850

Query: 3616 FKARLMENRFSQREGIEYNEIFSPVVK 3696
            ++ARL+   ++Q+ GI++NEIFSPVV+
Sbjct: 851  YRARLVVKGYAQKAGIDFNEIFSPVVR 877



 Score =  155 bits (392), Expect(5) = e-165
 Identities = 112/386 (29%), Positives = 198/386 (51%), Gaps = 4/386 (1%)
 Frame = +1

Query: 1087 ILAQQVLTKALERKEKNQ*LANEKWTELEAKAVTTI*SN*V*RHISNIRF*QKPLRRTCG 1266
            IL +    KA+E +  +  + +EKW E++  AV  +        +S+I   +K   +   
Sbjct: 25   ILRKDNCLKAIEGRPSD--ITDEKWREMDDNAVANLHLAMADSVLSSIA--EKTTAKEIW 80

Query: 1267 RNLRK-FTSQSLCQTDYIWRRNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKA 1443
              L K +  +SL    ++ R+ Y LRM E + +T+HIN  N L   L++ D  + E  +A
Sbjct: 81   DTLVKLYEVKSLHTRIFLKRKLYTLRMSESTAVTDHINNLNTLFAQLSTADFNIVENERA 140

Query: 1444 LLVLVSLPDSYSTIQTTLLIGNK--KLAVDDVMEAVLDQDKFRGITSRNQGDSFLAFLNR 1617
             L+L SLPDSY  +   +   N   +L+ +DV  A+L+++  R         S  A    
Sbjct: 141  ELLLQSLPDSYDQLIINITNNNVVGRLSFEDVAGAILEEESRRKNKEDRLESSKQAEALT 200

Query: 1618 CGRGFNQKKYSDKEQEMSMSRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIE 1797
              RG + ++ S   Q    S+   + +  ++ Y+C  + H K      K    KK    +
Sbjct: 201  MMRGRSMERGSSGSQNHGRSK--SRGRKNLKCYNCGMRGHMK------KDCWHKKSGGGK 252

Query: 1798 NSANVAEQTDVCSDEELYTVTENKVS*GDLLSVKDSSNIID*Y-MDFRCSFHMSPHMD*F 1974
            NS     Q  V S +E     + ++   + +S +    + + + +D   ++HM+P+ D F
Sbjct: 253  NSEASTSQGCVASTQE-----DGEILYSEAISSRGEKQLHECWILDSGATWHMTPNRDWF 307

Query: 1975 DTFTSCNGGTILLGNNAVCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDS 2154
             T+ S +GG++ +GN+   ++ G+GTIK+KM+DG ++ +  VR++  LKK+LLS+G LD 
Sbjct: 308  CTYESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVRHVKGLKKNLLSIGQLDD 367

Query: 2155 IGCSISVRDGVMKITKVSMVIMKG*K 2232
            + C I V  G++K+ K ++V+MK  K
Sbjct: 368  LKCKIHVEGGILKVVKGNLVVMKAEK 393



 Score =  150 bits (379), Expect(5) = e-165
 Identities = 85/242 (35%), Positives = 139/242 (57%), Gaps = 4/242 (1%)
 Frame = +2

Query: 3698 TLIRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLY 3877
            T IR++L++  + ++ LEQLDVKT FLHG+L+++IY+  PEGF E  KE LV  L KSLY
Sbjct: 879  TTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKENLVCRLTKSLY 938

Query: 3878 GLKQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDD--IVDSSKEE 4051
            GLKQ+PR WY +FD+F+++ GY+R   D C Y+   DD   ++L LYVDD  +V  +K++
Sbjct: 939  GLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDMLVVGPNKDQ 998

Query: 4052 VRYSSVEEFVEQ*ILHEGSWFSQENPRYGNS--QGLSGRKIVANSERICAEGLGEV*HEQ 4225
            ++    +   E     +       N   G    +    R+I  + +    + L     + 
Sbjct: 999  IQELKAQLARE----FDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRFNMQD 1054

Query: 4226 C*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVVS 4405
            C      +   +++  ++ P+++     +S++ YA+ +G LMYAM+CTRP+I  A+  VS
Sbjct: 1055 CKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGAVS 1114

Query: 4406 MY 4411
             +
Sbjct: 1115 RF 1116



 Score = 74.3 bits (181), Expect(5) = e-165
 Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
 Frame = +2

Query: 2552 MGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRLDNDTEYK 2722
            MG A YFVSFID+YS+++WVY +K+KS+   VFK+ KA++E   GK+++  R DN  EY 
Sbjct: 496  MGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYI 555

Query: 2723 NRSFLQFCQDENI 2761
            +  FL FC+ E I
Sbjct: 556  DGDFLAFCKQEGI 568



 Score = 68.2 bits (165), Expect(5) = e-165
 Identities = 41/95 (43%), Positives = 54/95 (56%)
 Frame = +3

Query: 2247 YKLIGDTIVGGTTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKFC 2426
            Y L+G+T+      S+   S   +T +WH RLGH SE  +K L +R LL GLK   L   
Sbjct: 399  YLLLGETLQEADA-SVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTL--- 454

Query: 2427 KFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVW 2531
             FC+ CV  KQ ++ F      SK+ILD +HSDVW
Sbjct: 455  PFCEHCVTSKQHRLQFAKVTTRSKHILDLIHSDVW 489



 Score =  178 bits (451), Expect = 3e-41
 Identities = 120/319 (37%), Positives = 177/319 (55%), Gaps = 14/319 (4%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +L+    K  I +LK  L+ EF MKDLG A KILGM+IHRD +  + WL+QK Y+ KVL 
Sbjct: 989  MLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLR 1048

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQT---RME*NIFPNYRM--QM*WVV*CTPWYVQG 4373
            RFNM + K +STPL  +++LSS +SP     RME +  P       + + + CT    + 
Sbjct: 1049 RFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICT----RP 1104

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSE--VTWFVDSDY 4547
             I+     +   MA+ G+EH + VK I RY+ GT++  L F+    GSE  V  +VDSD+
Sbjct: 1105 DIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFE----GSEFVVRGYVDSDF 1160

Query: 4548 VGDLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAESIWH*Q--MQAMRLCGLRD* 4721
             GDLD  +S TG+V+T  G  + W S LQ+ VALSTTEAE +   Q   +A+ +  L + 
Sbjct: 1161 AGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEE 1220

Query: 4722 L----KNXXXXXXXXXXXXIVKAMFI*QRTR-CSMSGHKILE*LNNGDIAVRKVHTKEIV 4886
            L    +             I +      RT+   +  H + E +  G + ++K+HTK+ +
Sbjct: 1221 LGHKQEKITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGKVDMQKIHTKDNI 1280

Query: 4887 ADMLSKSVTTEKFKHCLDL 4943
            AD+++K V T+KF  C  L
Sbjct: 1281 ADVMTKPVNTDKFTWCRSL 1299


>KYP38095.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  238 bits (606), Expect(5) = e-165
 Identities = 136/315 (43%), Positives = 196/315 (62%), Gaps = 4/315 (1%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            R F V  TP+QNG+ ERMNRTLLER R M   A L+KSFWAEA+ TACY INRSP   I 
Sbjct: 521  RQFTVAHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIG 580

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P E+ +GKP ++S + +FG P YV    ++R +KLDP+ ++ IFLGY D VKGYRLW
Sbjct: 581  LKTPMEMWNGKPSNYSSLHVFGCPVYVMYNSQER-TKLDPKSRKCIFLGYADNVKGYRLW 639

Query: 3124 NPVSKTKVISRDVVFNE----KHMLNKSGNEESAASELQKHLVEVEFLEEIKKK*RD*RX 3291
            +P ++  V+SRDVVF E    K   N S  ++++  E+     E +  E  ++   D + 
Sbjct: 640  DPTARKVVVSRDVVFAETELQKEQENDSTIKDTSIVEIGGKSKEDDTSEAEQE--HDEQE 697

Query: 3292 XXXXXPREVL*SCERSGKASQQTSTEI*V**HGCLYLDCWYSGDPISYQNAIKSEDNDKW 3471
                   +V  +  ++ K S  +   +      CL  +    G+P ++Q A++S D  +W
Sbjct: 698  PNEDNDGDVRRTTRQTKKPSWHSDYVMASHDAYCLLTE---EGEPSTFQEALRSSDVSQW 754

Query: 3472 SISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRKKETQSDKEGERFKARLMENRFSQ 3651
              +M +E+E L +N+ WELV LPKG KAI CKWV++ K   +D + ER++ARL+   ++Q
Sbjct: 755  MAAMHEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDGND-QVERYRARLVVKGYAQ 813

Query: 3652 REGIEYNEIFSPVVK 3696
            +EGI++NEIFSPVV+
Sbjct: 814  KEGIDFNEIFSPVVR 828



 Score =  150 bits (379), Expect(5) = e-165
 Identities = 85/242 (35%), Positives = 139/242 (57%), Gaps = 4/242 (1%)
 Frame = +2

Query: 3698 TLIRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLY 3877
            T IR++L++  + ++ LEQLDVKT FLHG+L+++IY+  PEGF E  KE LV  L KSLY
Sbjct: 830  TTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKENLVCRLTKSLY 889

Query: 3878 GLKQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDD--IVDSSKEE 4051
            GLKQ+PR WY +FD+F+++ GY+R   D C Y+   DD   ++L LYVDD  +V  +K++
Sbjct: 890  GLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDMLVVGPNKDQ 949

Query: 4052 VRYSSVEEFVEQ*ILHEGSWFSQENPRYGNS--QGLSGRKIVANSERICAEGLGEV*HEQ 4225
            ++    +   E     +       N   G    +    R+I  + +    + L     + 
Sbjct: 950  IQELKAQLARE----FDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRFNMQD 1005

Query: 4226 C*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVVS 4405
            C      +   +++  ++ P+++     +S++ YA+ +G LMYAM+CTRP+I  A+  VS
Sbjct: 1006 CKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGAVS 1065

Query: 4406 MY 4411
             +
Sbjct: 1066 RF 1067



 Score =  149 bits (376), Expect(5) = e-165
 Identities = 96/323 (29%), Positives = 171/323 (52%), Gaps = 3/323 (0%)
 Frame = +1

Query: 1273 LRKFTSQSLCQTDYIWRRNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLV 1452
            ++ +  +SL    ++ R+ Y LRM E + +T+HIN  N L   L++ D  + E  +A L+
Sbjct: 35   VKLYEVKSLHTRIFLKRKLYTLRMSESTAVTDHINNLNTLFAQLSTADFNIVENERAELL 94

Query: 1453 LVSLPDSYSTIQTTLLIGNK--KLAVDDVMEAVLDQDKFRGITSRNQGDSFLAFLNRCGR 1626
            L SLPDSY  +   +   N   +L+ +DV  A+L+++  R         S  A      R
Sbjct: 95   LQSLPDSYDQLIINITNNNVVGRLSFEDVAGAILEEESRRKNKEDRLESSKQAEALTMMR 154

Query: 1627 GFNQKKYSDKEQEMSMSRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSA 1806
            G + ++ S   Q    S+   + +  ++ Y+C  + H K      K    KK    +NS 
Sbjct: 155  GRSMERGSSGSQNHGRSK--SRGRKNLKCYNCGMRGHMK------KDCWHKKSGGGKNSE 206

Query: 1807 NVAEQTDVCSDEELYTVTENKVS*GDLLSVKDSSNIID*Y-MDFRCSFHMSPHMD*FDTF 1983
                Q  V S +E     + ++   + +S +    + + + +D   ++HM+P+ D F T+
Sbjct: 207  ASTSQGCVASTQE-----DGEILYSEAISSRGEKQLHECWILDSGATWHMTPNRDWFCTY 261

Query: 1984 TSCNGGTILLGNNAVCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGC 2163
             S +GG++ +GN+   ++ G+GTIK+KM+DG ++ +  VR++  LKK+LLS+G LD + C
Sbjct: 262  ESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVRHVKGLKKNLLSIGQLDDLKC 321

Query: 2164 SISVRDGVMKITKVSMVIMKG*K 2232
             I V  G++K+ K ++V+MK  K
Sbjct: 322  KIHVEGGILKVVKGNLVVMKAEK 344



 Score = 74.3 bits (181), Expect(5) = e-165
 Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
 Frame = +2

Query: 2552 MGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRLDNDTEYK 2722
            MG A YFVSFID+YS+++WVY +K+KS+   VFK+ KA++E   GK+++  R DN  EY 
Sbjct: 447  MGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYI 506

Query: 2723 NRSFLQFCQDENI 2761
            +  FL FC+ E I
Sbjct: 507  DGDFLAFCKQEGI 519



 Score = 68.2 bits (165), Expect(5) = e-165
 Identities = 41/95 (43%), Positives = 54/95 (56%)
 Frame = +3

Query: 2247 YKLIGDTIVGGTTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKFC 2426
            Y L+G+T+      S+   S   +T +WH RLGH SE  +K L +R LL GLK   L   
Sbjct: 350  YLLLGETLQEADA-SVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTL--- 405

Query: 2427 KFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVW 2531
             FC+ CV  KQ ++ F      SK+ILD +HSDVW
Sbjct: 406  PFCEHCVTSKQHRLQFAKVTTRSKHILDLIHSDVW 440



 Score =  178 bits (451), Expect = 3e-41
 Identities = 120/319 (37%), Positives = 177/319 (55%), Gaps = 14/319 (4%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +L+    K  I +LK  L+ EF MKDLG A KILGM+IHRD +  + WL+QK Y+ KVL 
Sbjct: 940  MLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLR 999

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQT---RME*NIFPNYRM--QM*WVV*CTPWYVQG 4373
            RFNM + K +STPL  +++LSS +SP     RME +  P       + + + CT    + 
Sbjct: 1000 RFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICT----RP 1055

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSE--VTWFVDSDY 4547
             I+     +   MA+ G+EH + VK I RY+ GT++  L F+    GSE  V  +VDSD+
Sbjct: 1056 DIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFE----GSEFFVRGYVDSDF 1111

Query: 4548 VGDLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAESIWH*Q--MQAMRLCGLRD* 4721
             GDLD  +S TG+V+T  G  + W S LQ+ VALSTTEAE +   Q   +A+ +  L + 
Sbjct: 1112 AGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEE 1171

Query: 4722 L----KNXXXXXXXXXXXXIVKAMFI*QRTR-CSMSGHKILE*LNNGDIAVRKVHTKEIV 4886
            L    +             I +      RT+   +  H + E +  G + ++K+HTK+ +
Sbjct: 1172 LGHKQEKITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNI 1231

Query: 4887 ADMLSKSVTTEKFKHCLDL 4943
            AD+++K V T+KF  C  L
Sbjct: 1232 ADVMTKPVNTDKFTWCRSL 1250


>KYP36645.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  235 bits (599), Expect(5) = e-164
 Identities = 136/327 (41%), Positives = 190/327 (58%), Gaps = 16/327 (4%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            R F V  TP+QNG+ ERMNRTLLER R M   A L+KSFWAEA+ TACY INRSP   I 
Sbjct: 521  RQFTVAHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIG 580

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P E+ SGKP ++S + +FG P YV    ++R +KLDP+ ++ IFLGY D VKGYRLW
Sbjct: 581  LKTPMEMWSGKPSNYSSLHVFGCPVYVMYNSQER-TKLDPKSRKCIFLGYADNVKGYRLW 639

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKSGNEESAASELQKHLVEVEFLEEIKKK*RD*RXXXXX 3303
            +P ++  V+SRDVVF E  +  +  N+ +         ++   + EI  K +        
Sbjct: 640  DPTARKVVVSRDVVFAETELQKEQENDST---------IKDTSIVEIGGKSKKDDTSEAE 690

Query: 3304 XPREVL*SCERSGKASQQTSTEI*V**HGCLYLDCWYS----------------GDPISY 3435
               E     E + +  QQ   E             W+S                G+P ++
Sbjct: 691  QEHEEQEPDEANDEEVQQIRRE--------RRRPSWHSDYVMASHDAYCLLTEEGEPSTF 742

Query: 3436 QNAIKSEDNDKWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRKKETQSDKEGER 3615
            Q A++S D  +W  +M +E+E L +N+ WELV LPKG KAI CKWV++ K   +D + ER
Sbjct: 743  QEALRSSDVSQWMAAMHEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDGND-QVER 801

Query: 3616 FKARLMENRFSQREGIEYNEIFSPVVK 3696
            ++ARL+   ++Q+EGI++NEIFSPVV+
Sbjct: 802  YRARLVVKGYAQKEGIDFNEIFSPVVR 828



 Score =  150 bits (380), Expect(5) = e-164
 Identities = 86/242 (35%), Positives = 138/242 (57%), Gaps = 4/242 (1%)
 Frame = +2

Query: 3698 TLIRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLY 3877
            T IR++L++  + ++ LEQLDVKT FLHG+L+++IY+  PEGF E  KE LV  L KSLY
Sbjct: 830  TTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKENLVCRLTKSLY 889

Query: 3878 GLKQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDD--IVDSSKEE 4051
            GLKQ+PR WY +FD+F+++ GY+R   D C Y+   DD   ++L LYVDD  +V  +K++
Sbjct: 890  GLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDMLVVGPNKDQ 949

Query: 4052 VRYSSVEEFVEQ*ILHEGSWFSQENPRYGNS--QGLSGRKIVANSERICAEGLGEV*HEQ 4225
            ++    +   E     +       N   G    +    RKI  +      + L     + 
Sbjct: 950  IQELKAQLARE----FDMKDLGPANKILGMQIHRDKKDRKIWLSQRNYLLKVLRRFNMQD 1005

Query: 4226 C*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVVS 4405
            C      +   +++  ++ P+++     +S++ YA+ +G LMYAM+CTRP+I  A+  VS
Sbjct: 1006 CKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGAVS 1065

Query: 4406 MY 4411
             +
Sbjct: 1066 RF 1067



 Score =  149 bits (376), Expect(5) = e-164
 Identities = 96/323 (29%), Positives = 171/323 (52%), Gaps = 3/323 (0%)
 Frame = +1

Query: 1273 LRKFTSQSLCQTDYIWRRNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLV 1452
            ++ +  +SL    ++ R+ Y LRM E + +T+HIN  N L   L++ D  + E  +A L+
Sbjct: 35   VKLYEVKSLHTRIFLKRKLYTLRMSESTAVTDHINNLNTLFAQLSTADFNIVENERAELL 94

Query: 1453 LVSLPDSYSTIQTTLLIGNK--KLAVDDVMEAVLDQDKFRGITSRNQGDSFLAFLNRCGR 1626
            L SLPDSY  +   +   N   +L+ +DV  A+L+++  R         S  A      R
Sbjct: 95   LQSLPDSYDQLIINITNNNVVGRLSFEDVAGAILEEESRRKNKEDRLESSKQAEALTMMR 154

Query: 1627 GFNQKKYSDKEQEMSMSRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSA 1806
            G + ++ S   Q    S+   + +  ++ Y+C  + H K      K    KK    +NS 
Sbjct: 155  GRSMERGSSGSQNHGRSK--SRGRKNLKCYNCGMRGHMK------KDCWHKKSGGGKNSE 206

Query: 1807 NVAEQTDVCSDEELYTVTENKVS*GDLLSVKDSSNIID*Y-MDFRCSFHMSPHMD*FDTF 1983
                Q  V S +E     + ++   + +S +    + + + +D   ++HM+P+ D F T+
Sbjct: 207  ASTSQGCVASTQE-----DGEILYSEAISSRGEKQLHECWILDSGATWHMTPNRDWFCTY 261

Query: 1984 TSCNGGTILLGNNAVCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGC 2163
             S +GG++ +GN+   ++ G+GTIK+KM+DG ++ +  VR++  LKK+LLS+G LD + C
Sbjct: 262  ESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVRHVKGLKKNLLSIGQLDDLKC 321

Query: 2164 SISVRDGVMKITKVSMVIMKG*K 2232
             I V  G++K+ K ++V+MK  K
Sbjct: 322  KIHVEGGILKVVKGNLVVMKAEK 344



 Score = 74.3 bits (181), Expect(5) = e-164
 Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
 Frame = +2

Query: 2552 MGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRLDNDTEYK 2722
            MG A YFVSFID+YS+++WVY +K+KS+   VFK+ KA++E   GK+++  R DN  EY 
Sbjct: 447  MGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYI 506

Query: 2723 NRSFLQFCQDENI 2761
            +  FL FC+ E I
Sbjct: 507  DGDFLAFCKQEGI 519



 Score = 68.2 bits (165), Expect(5) = e-164
 Identities = 41/95 (43%), Positives = 54/95 (56%)
 Frame = +3

Query: 2247 YKLIGDTIVGGTTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKFC 2426
            Y L+G+T+      S+   S   +T +WH RLGH SE  +K L +R LL GLK   L   
Sbjct: 350  YLLLGETLQEADA-SVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTL--- 405

Query: 2427 KFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVW 2531
             FC+ CV  KQ ++ F      SK+ILD +HSDVW
Sbjct: 406  PFCEHCVTSKQHRLQFAKVTTRSKHILDLIHSDVW 440



 Score =  179 bits (455), Expect = 1e-41
 Identities = 121/324 (37%), Positives = 179/324 (55%), Gaps = 14/324 (4%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +L+    K  I +LK  L+ EF MKDLG A KILGM+IHRD +  K WL+Q+ Y+ KVL 
Sbjct: 940  MLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDKKDRKIWLSQRNYLLKVLR 999

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQT---RME*NIFPNYRM--QM*WVV*CTPWYVQG 4373
            RFNM + K +STPL  +++LSS +SP     RME +  P       + + + CT    + 
Sbjct: 1000 RFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICT----RP 1055

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSE--VTWFVDSDY 4547
             I+     +   MA+ G+EH + VK I RY+ GT++  L F+    GSE  V  +VDSD+
Sbjct: 1056 DIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFE----GSEFFVRGYVDSDF 1111

Query: 4548 VGDLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAESIWH*Q--MQAMRLCGLRD* 4721
             GDLD  +S TG+V+T  G  + W S LQ+ VALSTTEAE +   Q   +A+ +  L + 
Sbjct: 1112 AGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEE 1171

Query: 4722 L----KNXXXXXXXXXXXXIVKAMFI*QRTR-CSMSGHKILE*LNNGDIAVRKVHTKEIV 4886
            L    +             I +      RT+   +  H + E +  G + ++K+HTK+ +
Sbjct: 1172 LGHKQEKITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNI 1231

Query: 4887 ADMLSKSVTTEKFKHCLDLIHFVE 4958
            AD+++K V T+KF  C  L   +E
Sbjct: 1232 ADVMTKPVNTDKFTWCRSLFGLLE 1255


>ACL97387.1 Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  232 bits (592), Expect(5) = e-164
 Identities = 133/317 (41%), Positives = 184/317 (58%), Gaps = 6/317 (1%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            R F V  TP+QNG+ ERMNRTLLER R M   A L+KSFWAEA  TACY INRSP   I 
Sbjct: 571  RQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIG 630

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P E+  GKP D+S +++FG P YV    ++R +KLDP+ +   FLGY D VKGYRLW
Sbjct: 631  LKTPMEMWKGKPGDYSSLRVFGCPVYVMYNSQER-TKLDPKSRRCTFLGYADNVKGYRLW 689

Query: 3124 NPVSKTKVISRDVVFNE----KHMLNKSGNEESAASELQKHLVEVEFLEEIKKK*RD*RX 3291
            +P ++   +SRDV+F E    K   N    +E+A  E+++   E     E + + ++   
Sbjct: 690  DPTARKIFVSRDVIFVENELQKEQKNDGTTKETATVEIEEKSGEENSEAEPEHEEQEPNE 749

Query: 3292 XXXXXPREVL*SCERSGKASQQTSTEI*V**HG--CLYLDCWYSGDPISYQNAIKSEDND 3465
                 PR       +    S+          H   CL  +    G+P ++  A+   D  
Sbjct: 750  VNDAEPRRTTRQIRKPSWHSEYVMAS-----HDAYCLLSE---DGEPSTFHEAVNGSDAS 801

Query: 3466 KWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRKKETQSDKEGERFKARLMENRF 3645
             W  +M +E+E L +N  WELV+LPKG KAI  KWVF+ K   +D + ER++ARL+   +
Sbjct: 802  LWMAAMQEEIEALHRNNTWELVELPKGRKAIGNKWVFKIKRDGND-QVERYRARLVVKGY 860

Query: 3646 SQREGIEYNEIFSPVVK 3696
            +Q+EGI++NEIFSPVV+
Sbjct: 861  AQKEGIDFNEIFSPVVR 877



 Score =  150 bits (380), Expect(5) = e-164
 Identities = 96/326 (29%), Positives = 168/326 (51%), Gaps = 3/326 (0%)
 Frame = +1

Query: 1273 LRKFTSQSLCQTDYIWRRNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLV 1452
            ++ +  +SL    ++ RR Y  RM E + + +HIN  N +   L++ D  + E  +A ++
Sbjct: 84   IQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHINNLNTMFAQLSASDFTIGENERAEVL 143

Query: 1453 LVSLPDSYSTIQTTLLIGN--KKLAVDDVMEAVLDQDKFRGITSRNQGDSFLAFLNRCGR 1626
            L SLPDSY  +   +   N   +L+ +DV  A+L+++  R      Q  S         R
Sbjct: 144  LQSLPDSYDQLVINITNNNIVDRLSFNDVAGAILEEESRRKNKEDRQDSSKQMEALTVTR 203

Query: 1627 GFNQKKYSDKEQEMSMSRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSA 1806
            G + ++     Q  +  R   + K+ ++ Y+C ++ H K    S KK  +K      +  
Sbjct: 204  GRSTERGPSGSQ--NHGRSTSRRKTNLKCYNCGKRGHLKKDCWSNKKSGEKSSEASTSQG 261

Query: 1807 NVAEQTDVCSDEELYTVTENKVS*GDLLSVKDSSNIID*YM-DFRCSFHMSPHMD*FDTF 1983
             VA  +D    E LY+           +S K  + + D ++ D   ++HM+P  D F T+
Sbjct: 262  CVASTSD--DGEVLYSEAA--------VSTKGKNRLTDVWIVDSGATWHMTPRRDWFCTY 311

Query: 1984 TSCNGGTILLGNNAVCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGC 2163
               + G + +GN+   ++ GIGT+K+KM+DG ++ L +VR++ EL K+LLSVG LD +G 
Sbjct: 312  EPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQEVRHVKELAKNLLSVGQLDDLGY 371

Query: 2164 SISVRDGVMKITKVSMVIMKG*KKKA 2241
               ++ G++K+ K S+V+MK  K  A
Sbjct: 372  KYDIQGGILKVVKGSLVVMKAKKVAA 397



 Score =  148 bits (373), Expect(5) = e-164
 Identities = 87/243 (35%), Positives = 139/243 (57%), Gaps = 5/243 (2%)
 Frame = +2

Query: 3698 TLIRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLY 3877
            T IR++L++  + ++ LEQLDVKT FLHG+LE++IY+  PEGF E  +E LV  L KSLY
Sbjct: 879  TTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYMLQPEGFEEKERENLVCRLTKSLY 938

Query: 3878 GLKQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDD--IVDSSK-- 4045
            GLKQ+PR WY +FD+F+++ GY+R   D C Y++  DDG  ++L LYVDD  +V  +K  
Sbjct: 939  GLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFDDGDFIILLLYVDDMLVVGPNKDR 998

Query: 4046 -EEVRYSSVEEFVEQ*ILHEGSWFSQENPRYGNSQGLSGRKIVANSERICAEGLGEV*HE 4222
             +E++     EF  + +         +  R         RKI  + +    + L     +
Sbjct: 999  VQELKAQLAREFDMKDLGPANKILGMQIHR-----DRKDRKIWLSQKNYLQKVLRRFNMQ 1053

Query: 4223 QC*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVV 4402
                    +   +++  ++ P+ +     +S++ YA+ +G LMYAM+CTRP+I  A+  V
Sbjct: 1054 DYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGTV 1113

Query: 4403 SMY 4411
            S +
Sbjct: 1114 SRF 1116



 Score = 74.7 bits (182), Expect(5) = e-164
 Identities = 37/74 (50%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
 Frame = +2

Query: 2552 MGEAHYFVSFIDEYSKKVWVYFMKQKS---EVFKQ*KAKIEN*IGKKLEYFRLDNDTEYK 2722
            +G A YFVSFID+YS+++WVY +K+KS    VFK+ KA++E   GK+++  R DN  EY 
Sbjct: 497  IGGAKYFVSFIDDYSRRLWVYPIKKKSGVYSVFKEFKAQVELETGKRIKCLRTDNGGEYT 556

Query: 2723 NRSFLQFCQDENIT 2764
            +  FL FC+ E IT
Sbjct: 557  DGDFLAFCKQEGIT 570



 Score = 70.1 bits (170), Expect(5) = e-164
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
 Frame = +3

Query: 2247 YKLIGDTI-VGGTTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKF 2423
            Y L+GDT  +   ++++   S   +T +WH RLGH SE  +K L +R L+ GLK+  L  
Sbjct: 400  YMLLGDTWQMADASVAV--GSQEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSL-- 455

Query: 2424 CKFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVW 2531
              FC+ CV  KQ ++ F      SK+ILD +HSDVW
Sbjct: 456  -PFCEHCVISKQHRLKFAKSTARSKHILDLIHSDVW 490



 Score =  176 bits (446), Expect = 1e-40
 Identities = 118/320 (36%), Positives = 173/320 (54%), Gaps = 18/320 (5%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +L+    K  + +LK  L+ EF MKDLG A KILGM+IHRD +  K WL+QK Y+QKVL 
Sbjct: 989  MLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLQKVLR 1048

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQT---RME*NIFPNYRM--QM*WVV*CTPWYVQG 4373
            RFNM +   +STPL  +++LSS + P +   RME +  P       + + + CT    + 
Sbjct: 1049 RFNMQDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYAMICT----RP 1104

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSEVT--WFVDSDY 4547
             I+     +   MA+ GKEH NAVK I RY+ GT+   L F     GSE T   +VDSD+
Sbjct: 1105 DIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCF----GGSEFTIRGYVDSDF 1160

Query: 4548 VGDLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEA----------ESIWH*QMQAM 4697
             GDLD  +S TG+V+T  G  + W S LQ+ VALSTTEA          E+IW    + +
Sbjct: 1161 AGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIW--TQRLL 1218

Query: 4698 RLCGLRD*LKNXXXXXXXXXXXXIVKAMFI*QRTR-CSMSGHKILE*LNNGDIAVRKVHT 4874
               G +   +             I +      RT+   +  H + E +  G + ++K+HT
Sbjct: 1219 EELGHKQ--QKITVYCDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIHT 1276

Query: 4875 KEIVADMLSKSVTTEKFKHC 4934
            K+ +AD+++K + ++KF  C
Sbjct: 1277 KDNLADVMTKPINSDKFIWC 1296


>KYP67664.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  234 bits (596), Expect(5) = e-164
 Identities = 135/327 (41%), Positives = 190/327 (58%), Gaps = 16/327 (4%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            R F V  TP+QNG+ ERMNRTLLER R M   A L+KSFWAEA+ TACY INRSP   I 
Sbjct: 521  RQFTVAHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIG 580

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P E+ +GKP ++S + +FG P YV    ++R +KLDP+ ++ IFLGY D VKGYRLW
Sbjct: 581  LKTPMEMWNGKPSNYSSLHVFGCPVYVMYNSQER-TKLDPKSRKCIFLGYADNVKGYRLW 639

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKSGNEESAASELQKHLVEVEFLEEIKKK*RD*RXXXXX 3303
            +P ++  V+SRDVVF E  +  +  N+ +         ++   + EI  K +        
Sbjct: 640  DPTARKVVVSRDVVFAETELQKEQENDST---------IKDTSIVEIGGKSKKDDTSEAE 690

Query: 3304 XPREVL*SCERSGKASQQTSTEI*V**HGCLYLDCWYS----------------GDPISY 3435
               E     E + +  QQ   E             W+S                G+P ++
Sbjct: 691  QEHEEQEPDEANDEEVQQIRRE--------RRRPSWHSDYVMASHDAYCLLTEEGEPSTF 742

Query: 3436 QNAIKSEDNDKWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRKKETQSDKEGER 3615
            Q A++S D  +W  +M +E+E L +N+ WELV LPKG KAI CKWV++ K   +D + ER
Sbjct: 743  QEALRSSDVSQWMAAMHEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDGND-QVER 801

Query: 3616 FKARLMENRFSQREGIEYNEIFSPVVK 3696
            ++ARL+   ++Q+EGI++NEIFSPVV+
Sbjct: 802  YRARLVVKGYAQKEGIDFNEIFSPVVR 828



 Score =  150 bits (379), Expect(5) = e-164
 Identities = 85/242 (35%), Positives = 139/242 (57%), Gaps = 4/242 (1%)
 Frame = +2

Query: 3698 TLIRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLY 3877
            T IR++L++  + ++ LEQLDVKT FLHG+L+++IY+  PEGF E  KE LV  L KSLY
Sbjct: 830  TTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKENLVCRLTKSLY 889

Query: 3878 GLKQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDD--IVDSSKEE 4051
            GLKQ+PR WY +FD+F+++ GY+R   D C Y+   DD   ++L LYVDD  +V  +K++
Sbjct: 890  GLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDMLVVGPNKDQ 949

Query: 4052 VRYSSVEEFVEQ*ILHEGSWFSQENPRYGNS--QGLSGRKIVANSERICAEGLGEV*HEQ 4225
            ++    +   E     +       N   G    +    R+I  + +    + L     + 
Sbjct: 950  IQELKAQLARE----FDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRFNMQD 1005

Query: 4226 C*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVVS 4405
            C      +   +++  ++ P+++     +S++ YA+ +G LMYAM+CTRP+I  A+  VS
Sbjct: 1006 CKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGAVS 1065

Query: 4406 MY 4411
             +
Sbjct: 1066 RF 1067



 Score =  149 bits (376), Expect(5) = e-164
 Identities = 96/323 (29%), Positives = 171/323 (52%), Gaps = 3/323 (0%)
 Frame = +1

Query: 1273 LRKFTSQSLCQTDYIWRRNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLV 1452
            ++ +  +SL    ++ R+ Y LRM E + +T+HIN  N L   L++ D  + E  +A L+
Sbjct: 35   VKLYEVKSLHTRIFLKRKLYTLRMSESTAVTDHINNLNTLFAQLSTADFNIVENERAELL 94

Query: 1453 LVSLPDSYSTIQTTLLIGNK--KLAVDDVMEAVLDQDKFRGITSRNQGDSFLAFLNRCGR 1626
            L SLPDSY  +   +   N   +L+ +DV  A+L+++  R         S  A      R
Sbjct: 95   LQSLPDSYDQLIINITNNNVVGRLSFEDVAGAILEEESRRKNKEDRLESSKQAEALTMMR 154

Query: 1627 GFNQKKYSDKEQEMSMSRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSA 1806
            G + ++ S   Q    S+   + +  ++ Y+C  + H K      K    KK    +NS 
Sbjct: 155  GRSMERGSSGSQNHGRSK--SRGRKNLKCYNCGMRGHMK------KDCWHKKSGGGKNSE 206

Query: 1807 NVAEQTDVCSDEELYTVTENKVS*GDLLSVKDSSNIID*Y-MDFRCSFHMSPHMD*FDTF 1983
                Q  V S +E     + ++   + +S +    + + + +D   ++HM+P+ D F T+
Sbjct: 207  ASTSQGCVASTQE-----DGEILYSEAISSRGEKQLHECWILDSGATWHMTPNRDWFCTY 261

Query: 1984 TSCNGGTILLGNNAVCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGC 2163
             S +GG++ +GN+   ++ G+GTIK+KM+DG ++ +  VR++  LKK+LLS+G LD + C
Sbjct: 262  ESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVRHVKGLKKNLLSIGQLDDLKC 321

Query: 2164 SISVRDGVMKITKVSMVIMKG*K 2232
             I V  G++K+ K ++V+MK  K
Sbjct: 322  KIHVEGGILKVVKGNLVVMKAEK 344



 Score = 74.3 bits (181), Expect(5) = e-164
 Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
 Frame = +2

Query: 2552 MGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRLDNDTEYK 2722
            MG A YFVSFID+YS+++WVY +K+KS+   VFK+ KA++E   GK+++  R DN  EY 
Sbjct: 447  MGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYI 506

Query: 2723 NRSFLQFCQDENI 2761
            +  FL FC+ E I
Sbjct: 507  DGDFLAFCKQEGI 519



 Score = 68.2 bits (165), Expect(5) = e-164
 Identities = 41/95 (43%), Positives = 54/95 (56%)
 Frame = +3

Query: 2247 YKLIGDTIVGGTTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKFC 2426
            Y L+G+T+      S+   S   +T +WH RLGH SE  +K L +R LL GLK   L   
Sbjct: 350  YLLLGETLQEADA-SVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTL--- 405

Query: 2427 KFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVW 2531
             FC+ CV  KQ ++ F      SK+ILD +HSDVW
Sbjct: 406  PFCEHCVTSKQHRLQFAKVTTRSKHILDLIHSDVW 440



 Score =  178 bits (451), Expect = 3e-41
 Identities = 120/319 (37%), Positives = 177/319 (55%), Gaps = 14/319 (4%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +L+    K  I +LK  L+ EF MKDLG A KILGM+IHRD +  + WL+QK Y+ KVL 
Sbjct: 940  MLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLR 999

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQT---RME*NIFPNYRM--QM*WVV*CTPWYVQG 4373
            RFNM + K +STPL  +++LSS +SP     RME +  P       + + + CT    + 
Sbjct: 1000 RFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICT----RP 1055

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSE--VTWFVDSDY 4547
             I+     +   MA+ G+EH + VK I RY+ GT++  L F+    GSE  V  +VDSD+
Sbjct: 1056 DIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFE----GSEFFVRGYVDSDF 1111

Query: 4548 VGDLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAESIWH*Q--MQAMRLCGLRD* 4721
             GDLD  +S TG+V+T  G  + W S LQ+ VALSTTEAE +   Q   +A+ +  L + 
Sbjct: 1112 AGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEE 1171

Query: 4722 L----KNXXXXXXXXXXXXIVKAMFI*QRTR-CSMSGHKILE*LNNGDIAVRKVHTKEIV 4886
            L    +             I +      RT+   +  H + E +  G + ++K+HTK+ +
Sbjct: 1172 LGHKQEKITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNI 1231

Query: 4887 ADMLSKSVTTEKFKHCLDL 4943
            AD+++K V T+KF  C  L
Sbjct: 1232 ADVMTKPVNTDKFTWCRSL 1250


>AFB73911.1 polyprotein [Citrus sinensis]
          Length = 1309

 Score =  219 bits (558), Expect(5) = e-164
 Identities = 135/318 (42%), Positives = 182/318 (57%), Gaps = 7/318 (2%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            R F V  TP+QNG+ ERMNRTL ER R M   A L  SFWAEA  TACY +NRSP   I 
Sbjct: 571  RQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIG 630

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K   E+ +GKP D+S +  FG P YV    ++R +KLD + +  IFLGY DGVKGYRLW
Sbjct: 631  LKTAMEMWTGKPADYSYLHAFGCPMYVMYNAQER-TKLDAKSRRCIFLGYADGVKGYRLW 689

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKSGNEESAASELQKHLVEVEFLEEIKKK*RD*RXXXXX 3303
            +P +   VISRDV+F E  +  K G++ +   + +   V VE   E              
Sbjct: 690  DPTAHKIVISRDVIFVEDQLQRKDGDDGTVKEKSETVPVYVENNPENSDSSEAAPEHEEQ 749

Query: 3304 XPRE-VL*SCERSGKASQQTS------TEI*V**HGCLYLDCWYSGDPISYQNAIKSEDN 3462
             P E       RS +  +  +      TEI V    CL  +    G+P ++  A+ S D 
Sbjct: 750  EPVESEAPEVRRSTRERRPPTWHSEYVTEINV--AYCLLTE---DGEPSTFHEALNSSDV 804

Query: 3463 DKWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRKKETQSDKEGERFKARLMENR 3642
              W  +M +E+E L KN+ WELV LP+G KAI  KWV++ K   +D + ER++ARL+   
Sbjct: 805  ALWMTAMQEEIEALHKNKTWELVPLPRGRKAIGNKWVYKIKRDGND-QVERYRARLVVKG 863

Query: 3643 FSQREGIEYNEIFSPVVK 3696
            ++Q+EGI++NEIFSPVV+
Sbjct: 864  YAQKEGIDFNEIFSPVVR 881



 Score =  159 bits (403), Expect(5) = e-164
 Identities = 109/371 (29%), Positives = 189/371 (50%), Gaps = 6/371 (1%)
 Frame = +1

Query: 1129 EKNQ*LANEKWTELEAKAVTTI*SN*V*RHISNIRF*QKPLRRTCGRNLRK-FTSQSLCQ 1305
            E+   + ++KW E++  A++ +        +S++   +K   +     L K + ++SL  
Sbjct: 37   ERPMEITDDKWNEVDGNAISDLHLALADGVLSSVA--EKNTAKEIWDTLTKLYEAKSLHN 94

Query: 1306 TDYIWRRNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLVLVSLPDSYSTI 1485
              ++ R+ Y LRM E + +T+HIN    L + LT++   ++E  +A L+L SLPDSY  +
Sbjct: 95   KIFLKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQL 154

Query: 1486 QTTLLIGN--KKLAVDDVMEAVLDQDKFRGITSRNQGDSFLAFLNRCGRGFNQKKYSDKE 1659
               L   N  + L  DDV  +VL+++  R      Q  S  A      RG + ++     
Sbjct: 155  IINLTNNNPVESLVFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGS 214

Query: 1660 QEMSMSRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSANVAEQTDVCSD 1839
            Q    S+   + K  V+ Y+C +K H K +  S +K  + K     N+      T    +
Sbjct: 215  QNQGRSK--FRGKKNVKCYNCGKKGHVKKECWSNQKRREGKEPETSNAQGCVASTSDDGE 272

Query: 1840 ---EELYTVTENKVS*GDLLSVKDSSNIID*YMDFRCSFHMSPHMD*FDTFTSCNGGTIL 2010
                E  TV+E +    D+  +           D   ++HM+   + F T+   +GG++ 
Sbjct: 273  ILYSEATTVSEGRKRLSDVWLI-----------DSGATWHMTSRREWFHTYEPISGGSVY 321

Query: 2011 LGNNAVCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGCSISVRDGVM 2190
            +GN+   ++ GIGTIK+KMFDG ++ +G+VR++  LKK+LLS+G +DS G    V +G+M
Sbjct: 322  MGNDHALEIAGIGTIKIKMFDGTIRTIGEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIM 381

Query: 2191 KITKVSMVIMK 2223
            KI K ++V+MK
Sbjct: 382  KIVKGALVLMK 392



 Score =  159 bits (403), Expect(5) = e-164
 Identities = 88/243 (36%), Positives = 144/243 (59%), Gaps = 5/243 (2%)
 Frame = +2

Query: 3698 TLIRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLY 3877
            T +R++L++  + D+ LEQLDVKT FLHG+LE++IY+  PEGF E  KE LV  L KSLY
Sbjct: 883  TTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLY 942

Query: 3878 GLKQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDDIVDSSK---- 4045
            GLKQ+PR WY +FD+F+++ GY+R   D C Y++  +D   ++L LYVDD++ +      
Sbjct: 943  GLKQAPRYWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDR 1002

Query: 4046 -EEVRYSSVEEFVEQ*ILHEGSWFSQENPRYGNSQGLSGRKIVANSERICAEGLGEV*HE 4222
             +E++     EF  + +         +  R  N+      KI  + +    + L     +
Sbjct: 1003 IQELKAQLAREFEMKDLGPANKILGMQIHRDRNNM-----KIWLSQKNYLKKILRRFNMQ 1057

Query: 4223 QC*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVV 4402
             C +   S+   F++  ++ P+++   + +S++ YA+ +G LM+AM+CTRP+I  A+ VV
Sbjct: 1058 DCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGVV 1117

Query: 4403 SMY 4411
            S Y
Sbjct: 1118 SRY 1120



 Score = 70.1 bits (170), Expect(5) = e-164
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
 Frame = +2

Query: 2552 MGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRLDNDTEYK 2722
            MG A Y V+FID+YS++ WVY +K+KS+   VFK+ KA +E   GKK++  R DN  EY 
Sbjct: 497  MGGAKYMVTFIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYT 556

Query: 2723 NRSFLQFCQDENI 2761
            +  FL FC+ E I
Sbjct: 557  DGEFLAFCKQEGI 569



 Score = 66.2 bits (160), Expect(5) = e-164
 Identities = 35/77 (45%), Positives = 47/77 (61%)
 Frame = +3

Query: 2301 NSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKFCKFCKFCVYDKQRKVNFKV 2480
            ++   ST +WH++LGH SE  +K L +R LL GLK+  L    FC+ CV  KQ ++ F  
Sbjct: 417  SNGEESTMMWHLKLGHMSEQGLKILSERKLLPGLKSVSL---PFCEHCVTSKQHRLKFSR 473

Query: 2481 GEHTSKNILDYVHSDVW 2531
                SK ILD +HSDVW
Sbjct: 474  SIARSKCILDLIHSDVW 490



 Score =  175 bits (444), Expect = 2e-40
 Identities = 120/326 (36%), Positives = 170/326 (52%), Gaps = 27/326 (8%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +L+A   K  I +LK  L+ EF MKDLG A KILGM+IHRD    K WL+QK Y++K+L 
Sbjct: 993  MLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNMKIWLSQKNYLKKILR 1052

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQTRME*NIFPNYRM-----QM*WVV*CTPWYVQG 4373
            RFNM + K +ST L  +F+LSS + P    E               + + + CT    + 
Sbjct: 1053 RFNMQDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICT----RP 1108

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSEVT--WFVDSDY 4547
             I+    V+   MAN G EH  AVK I RY+ GT++  L +     GSE T   +VDSD+
Sbjct: 1109 DIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCY----GGSEFTVRGYVDSDF 1164

Query: 4548 VGDLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAE----------SIW------- 4676
             GDLD  +S TG+V+T  G  + W S LQ+ VALSTTEAE          +IW       
Sbjct: 1165 AGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKKAIWIQRLLEE 1224

Query: 4677 --H*QMQAMRLCGLRD*LKNXXXXXXXXXXXXIVKAMFI*QRTR-CSMSGHKILE*LNNG 4847
              H Q + +  C  +  L              I +      RT+   +  H + E + +G
Sbjct: 1225 LGHKQQKILVFCDSQSALH-------------IARNPAFHSRTKHIGVQYHFVREVVEDG 1271

Query: 4848 DIAVRKVHTKEIVADMLSKSVTTEKF 4925
             + ++K+HTKE +AD+L+K + T+KF
Sbjct: 1272 SVDLQKIHTKENLADVLTKPINTDKF 1297


>AFB73912.1 polyprotein [Citrus sinensis]
          Length = 1309

 Score =  221 bits (562), Expect(5) = e-163
 Identities = 136/318 (42%), Positives = 183/318 (57%), Gaps = 7/318 (2%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            R F V  TP+QNG+ ERMNRTL ER R M   A L  SFWAEA  TACY +NRSP   I 
Sbjct: 571  RQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIG 630

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K   E+ +GKP D+S +  FG P YV    ++R +KLDP+ ++ IFLGY DGVKGYRLW
Sbjct: 631  LKTAMEMWTGKPADYSYLHAFGCPVYVMYNAQER-TKLDPKSRKCIFLGYADGVKGYRLW 689

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKSGNEESAASELQKHLVEVEFLEEIKKK*RD*RXXXXX 3303
            +P +   VISRDV+F E  +  K G++ +   + +   V VE   E              
Sbjct: 690  DPTAHKIVISRDVIFVEDQLQRKDGDDGTVKEKSETVPVYVENNPENSDSSEAAPEHEEQ 749

Query: 3304 XPRE-VL*SCERSGKASQQTS------TEI*V**HGCLYLDCWYSGDPISYQNAIKSEDN 3462
             P E       RS +  +  +      TEI V    CL  +    G+P ++  A+ S D 
Sbjct: 750  EPVESEAPEVRRSTRERRPPTWHSEYVTEINV--AYCLLTE---DGEPSTFHEALNSLDV 804

Query: 3463 DKWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRKKETQSDKEGERFKARLMENR 3642
              W  +M +E+E L KN+ WELV LP G KAI  KWV++ K   +D + ER++ARL+   
Sbjct: 805  ALWMTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWVYKIKRDGND-QVERYRARLVVKG 863

Query: 3643 FSQREGIEYNEIFSPVVK 3696
            ++Q+EGI++NEIFSPVV+
Sbjct: 864  YAQKEGIDFNEIFSPVVR 881



 Score =  159 bits (403), Expect(5) = e-163
 Identities = 112/371 (30%), Positives = 191/371 (51%), Gaps = 3/371 (0%)
 Frame = +1

Query: 1129 EKNQ*LANEKWTELEAKAVTTI*SN*V*RHISNIRF*QKPLRRTCGRNLRK-FTSQSLCQ 1305
            E+   + ++KW E+++ A++ +        +S++   +K   +     L K + ++SL  
Sbjct: 37   ERPMEITDDKWNEVDSNAISDLHLALADGVLSSVA--EKNTAKEIWDTLTKLYEAKSLHN 94

Query: 1306 TDYIWRRNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLVLVSLPDSYSTI 1485
              ++ R+ Y LRM E + +T+HIN    L + LT++   ++E  +A L+L SLPDSY  +
Sbjct: 95   KIFLKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQL 154

Query: 1486 QTTLLIGNK--KLAVDDVMEAVLDQDKFRGITSRNQGDSFLAFLNRCGRGFNQKKYSDKE 1659
               L   N    L  DDV  +VL+++  R      Q  S  A      RG + ++     
Sbjct: 155  IINLTNNNPVDSLVFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGS 214

Query: 1660 QEMSMSRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSANVAEQTDVCSD 1839
            Q    S+   + K  V+ Y+C +K H K +  S +K  + K     N+      T    D
Sbjct: 215  QNHGRSK--SRSKKNVKCYNCGKKGHVKKECWSNQKRREGKEPESSNAQGCVASTS--DD 270

Query: 1840 EELYTVTENKVS*GDLLSVKDSSNIID*YMDFRCSFHMSPHMD*FDTFTSCNGGTILLGN 2019
             E+       VS G     K  S++    +D   ++HM+   + F T+   +GG++ +GN
Sbjct: 271  GEILYSEATIVSEGR----KRLSDVW--LIDSGATWHMTSRREWFHTYEPISGGSVYMGN 324

Query: 2020 NAVCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGCSISVRDGVMKIT 2199
            +   ++ GIGTIK+KMFDG ++ + +VR++  LKK+LLS+G +DS GC   V +G+MKI 
Sbjct: 325  DHALEIAGIGTIKIKMFDGTIRTIEEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIV 384

Query: 2200 KVSMVIMKG*K 2232
            K ++V+MK  K
Sbjct: 385  KGALVLMKAEK 395



 Score =  157 bits (398), Expect(5) = e-163
 Identities = 87/243 (35%), Positives = 143/243 (58%), Gaps = 5/243 (2%)
 Frame = +2

Query: 3698 TLIRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLY 3877
            T +R++L++  + D+ LEQLDVKT FLHG+LE++IY+  PEGF E  KE LV  L KSLY
Sbjct: 883  TTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLY 942

Query: 3878 GLKQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDDIVDSSK---- 4045
            GLKQ+PR WY +FD+F+++ GY+R   D C Y++  +D   ++L LYVDD++ +      
Sbjct: 943  GLKQAPRCWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDR 1002

Query: 4046 -EEVRYSSVEEFVEQ*ILHEGSWFSQENPRYGNSQGLSGRKIVANSERICAEGLGEV*HE 4222
             +E++     EF  + +         +  R  N+     RKI  + +    + L     +
Sbjct: 1003 IQELKAQLAREFEMKDLGPANKILGMQIHRDRNN-----RKIWLSQKNYLKKILRRFNMQ 1057

Query: 4223 QC*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVV 4402
             C +    +   F++  ++ P+++   + +S++ YA+ +G LM+AM+CTRP+I  A+  V
Sbjct: 1058 DCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGAV 1117

Query: 4403 SMY 4411
            S Y
Sbjct: 1118 SRY 1120



 Score = 70.5 bits (171), Expect(5) = e-163
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
 Frame = +2

Query: 2552 MGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRLDNDTEYK 2722
            MG A Y V+FID+YS++ WVY +K+KS+   VFK+ KA +E   GKK++  R DN  EY 
Sbjct: 497  MGGAKYMVTFIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYT 556

Query: 2723 NRSFLQFCQDENI 2761
            +  FL FC+ E I
Sbjct: 557  DSEFLAFCKQEGI 569



 Score = 63.5 bits (153), Expect(5) = e-163
 Identities = 34/77 (44%), Positives = 46/77 (59%)
 Frame = +3

Query: 2301 NSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKFCKFCKFCVYDKQRKVNFKV 2480
            ++   ST +WH++LGH SE  +K L +R L  GLK+  L    FC+ CV  KQ ++ F  
Sbjct: 417  SNGEESTMMWHLKLGHMSEQGLKILSERKLPPGLKSVSL---PFCEHCVTSKQHRLKFSR 473

Query: 2481 GEHTSKNILDYVHSDVW 2531
                SK ILD +HSDVW
Sbjct: 474  SIARSKCILDLIHSDVW 490



 Score =  179 bits (455), Expect = 1e-41
 Identities = 122/326 (37%), Positives = 170/326 (52%), Gaps = 27/326 (8%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +L+A   K  I +LK  L+ EF MKDLG A KILGM+IHRD    K WL+QK Y++K+L 
Sbjct: 993  MLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNRKIWLSQKNYLKKILR 1052

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQTRME*NIFPNYRM-----QM*WVV*CTPWYVQG 4373
            RFNM + K +STPL  +F+LSS + P    E               + + + CT    + 
Sbjct: 1053 RFNMQDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICT----RP 1108

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSEVT--WFVDSDY 4547
             I+     +   MAN G EH  AVK I RY+ GT+N  L +     GSE T   +VDSD+
Sbjct: 1109 DIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCY----GGSEFTVRGYVDSDF 1164

Query: 4548 VGDLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEA----------ESIW------- 4676
             GDLD  +S TG+V+T  G  + W S LQ+ VALSTTEA          E+IW       
Sbjct: 1165 AGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEE 1224

Query: 4677 --H*QMQAMRLCGLRD*LKNXXXXXXXXXXXXIVKAMFI*QRTR-CSMSGHKILE*LNNG 4847
              H Q +    C  +  L              I +      RT+   +  H + E + +G
Sbjct: 1225 LGHKQQKIPVFCDSQSAL-------------HIARNPAFHSRTKHIGVQYHFVREVVEDG 1271

Query: 4848 DIAVRKVHTKEIVADMLSKSVTTEKF 4925
             + ++K+HTKE +AD+L+KS+ T+KF
Sbjct: 1272 SVDLQKIHTKENLADVLTKSINTDKF 1297


>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score =  216 bits (550), Expect(5) = e-162
 Identities = 136/354 (38%), Positives = 189/354 (53%), Gaps = 42/354 (11%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*L--SKSFWAEALNTACYQINRSP*AG 2937
            RH  +   P+QNG+ ER+NRT+LERARCM  NA L   +  W EA +TACY INRSP + 
Sbjct: 271  RHKTIPGKPQQNGVAERLNRTILERARCMLSNAGLWHQRELWVEAASTACYLINRSPHSS 330

Query: 2938 IDYKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYR 3117
            +++KIPEE+ SG PID+S ++IFG PAY H+       KL PR  + IFLGY    KGYR
Sbjct: 331  LNFKIPEEIWSGNPIDYSNLRIFGCPAYAHV----NDGKLAPRAIKCIFLGYASESKGYR 386

Query: 3118 LWNPVSKTK--VISRDVVFNEKHMLNKSGNEESAASELQKHLVEVEFLEEIKKK*RD*RX 3291
            LW   SK++  ++SRDV FNE  +L+ SG + S +S    +L       E++ K      
Sbjct: 387  LWCSESKSRRLILSRDVTFNEDALLS-SGKQSSVSSSSTNNLQGTSEKVELELK------ 439

Query: 3292 XXXXXPREVL*SCERSGKASQQTSTEI*V**HG--------------------CLYLDCW 3411
                       S   +      ++TE  +  HG                     + L   
Sbjct: 440  -----------SVAPNVDVPSSSTTESSIDDHGDDHPIQQQEEYNIARDRTRRQIKLPAR 488

Query: 3412 YSGDPI-SYQNAIKSEDND-----------------KWSISMTKEMEFLQKNQIWELVQL 3537
            Y+ D + +Y  +I  E ND                 KW ++M +E+E L KN  W L +L
Sbjct: 489  YTDDNLTAYALSIAQEVNDDVEPASYSEAVSCVDSAKWLVAMNEEIESLHKNNTWNLTKL 548

Query: 3538 PKGSKAIRCKWVFRKKETQSDKEGERFKARLMENRFSQREGIEYNEIFSPVVKH 3699
            PKG + +RCKW+++KK+     E  R KARL+   F Q+EGI++NEIFSPVV+H
Sbjct: 549  PKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQKEGIDFNEIFSPVVRH 602



 Score =  213 bits (543), Expect(5) = e-162
 Identities = 141/400 (35%), Positives = 214/400 (53%), Gaps = 24/400 (6%)
 Frame = +2

Query: 3695 NTLIRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSL 3874
            +T IR++L+ V   D+ELEQLDVKT FLHG+LE++IY+  PEGF+ P KE LV  LKKSL
Sbjct: 602  HTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHLVCQLKKSL 661

Query: 3875 YGLKQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDDIVDSSKEEV 4054
            YGLKQ+PR+WY KFD+FM+  GYSRS YD C+YF+   DG+ + L LYVDD++ +S+++ 
Sbjct: 662  YGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIASRDKS 721

Query: 4055 RYSSVEEFVEQ*ILHEGSWFSQENPRYGNSQGLSGR---------KIVANSERICAEGLG 4207
              S ++  +             E    G ++ + G          K+  + ++     L 
Sbjct: 722  LISKLKAQLNN---------EFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLD 772

Query: 4208 EV*HEQC*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILH 4387
                  C      + + F++   + P  K+ +E +S + YA+ +G LMYAMVCTRP++ +
Sbjct: 773  RFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAY 832

Query: 4388 AISVVSMY----GKFRERALKCC------EMNFSL-FSR----YNQLWSYV*S*YCRK*G 4522
            A+S+VS Y    GK    A+K          N  L F R     N +  +V S Y     
Sbjct: 833  AVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLD 892

Query: 4523 YMVC*FGLCWRLRCNEIYDRVCIHLLWKMYMLEVSVAVYGSIINNRGREYMALTDASNEA 4702
                  G  + L CN         + WK  +  ++       ++    EY++ T+   EA
Sbjct: 893  RRRSLSGYIFTL-CNSA-------ISWKASLQSIAA------LSTTEAEYVSATEGVKEA 938

Query: 4703 LWLKGLVEKLGFK*GSIQIQCDSQSDVHLAKNQVFHVRTQ 4822
            LW++GLV++LG     + + CDSQS +HL KN  +H +T+
Sbjct: 939  LWIRGLVKELGLTQDVLTVFCDSQSAIHLTKNSRYHDKTK 978



 Score = 97.8 bits (242), Expect(5) = e-162
 Identities = 41/91 (45%), Positives = 66/91 (72%)
 Frame = +1

Query: 1951 MSPHMD*FDTFTSCNGGTILLGNNAVCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSL 2130
            M P+ D F T    + G +L+GN+  CK+ GIGTI++K  DG +K L +VR+IP+LK++L
Sbjct: 1    MCPYKDLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNL 60

Query: 2131 LSVGVLDSIGCSISVRDGVMKITKVSMVIMK 2223
            +S+G L+S+GC  S   GV+K++K ++V++K
Sbjct: 61   ISLGTLESLGCKYSAEGGVLKVSKGAIVLLK 91



 Score = 82.4 bits (202), Expect(5) = e-162
 Identities = 42/101 (41%), Positives = 61/101 (60%)
 Frame = +3

Query: 2238 GTFYKLIGDTIVGGTTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRIL 2417
            G+ Y L G  + G   +S    S+ ++T+LWHMRLGH SE  M  L K+ LL     + +
Sbjct: 96   GSLYILQGSIVTGSAAVSS-SMSDKDATKLWHMRLGHMSEKGMHLLSKQGLL---GNQGI 151

Query: 2418 KFCKFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVWGRS 2540
               +FC+ CV+ KQ++V+F    H +K  LDY+HSD+WG S
Sbjct: 152  GKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPS 192



 Score = 61.2 bits (147), Expect(5) = e-162
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2531 GPINHTLMGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRL 2701
            GP      G   Y ++ ID++S+KVWVYF++ K+E    FK+ K  +E   GKK++  R 
Sbjct: 190  GPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRT 249

Query: 2702 DNDTEYKNRSFLQFCQDENI 2761
            DN  E+    F +FC +  I
Sbjct: 250  DNGLEFCEGDFNEFCANHGI 269



 Score =  223 bits (568), Expect = 1e-55
 Identities = 140/321 (43%), Positives = 198/321 (61%), Gaps = 15/321 (4%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +LIA++ KS I +LK  L++EF MK+LG+AKKILGMEIHRD Q GK +L+Q+ Y++++L+
Sbjct: 713  MLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLD 772

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQT-----RME*NIFPNYRMQM*WVV*CTPWYVQG 4373
            RFNMNN K VSTPLAAHF+LSS L PQT     RM    + +    + + + CT    + 
Sbjct: 773  RFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCT----RP 828

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTA-GSEVTWFVDSDYV 4550
             ++Y  S++   M N GK+H +AVK IFRYL GT+N GL+FDR+ A  + V  FVDSDY 
Sbjct: 829  DLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYG 888

Query: 4551 GDLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAE--SIWH*QMQAMRLCGLRD*L 4724
            GDLD  RS++G+++T C   I W++ LQS  ALSTTEAE  S      +A+ + GL   L
Sbjct: 889  GDLDRRRSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKEL 948

Query: 4725 KNXXXXXXXXXXXXIVKAMFI*QRTR-------CSMSGHKILE*LNNGDIAVRKVHTKEI 4883
                             A+ + + +R         +  H I + +  G++ ++KVHT E 
Sbjct: 949  --GLTQDVLTVFCDSQSAIHLTKNSRYHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSEN 1006

Query: 4884 VADMLSKSVTTEKFKHCLDLI 4946
             ADML+K +   KF+HCL L+
Sbjct: 1007 PADMLTKPLPNAKFQHCLGLV 1027


>ABA97637.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  223 bits (568), Expect(5) = e-161
 Identities = 133/343 (38%), Positives = 182/343 (53%), Gaps = 31/343 (9%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            RH  +  TP+QNG+ ERMNRT++ +ARCM  NA ++K FWAEA NTACY INRSP   ++
Sbjct: 575  RHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLN 634

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
             K P E+ SG P D+S +++FG  AY H+  E    KL+PR  + +FLGY  GVKGY+LW
Sbjct: 635  KKTPIEIWSGMPADYSQLRVFGCTAYAHVDNE----KLEPRAIKCLFLGYGLGVKGYKLW 690

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKS---------GNEESAASELQKHLVEVEFLEEIKKK* 3276
            NP +    +SR VVFNE  M N S          +EE     +Q   V+ +  E +    
Sbjct: 691  NPETNKTFMSRSVVFNESVMFNDSLPTDVIPGGSDEEQQYVSVQVEHVDDQETEIVGNDV 750

Query: 3277 RD-------------------*RXXXXXXPREVL*SCER---SGKASQQTSTEI*V**HG 3390
             D                           P  ++  C+    +   ++Q    +      
Sbjct: 751  NDTVQHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQVENTL----EP 806

Query: 3391 CLYLDCWYSGDPISYQNAIKSEDNDKWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKW 3570
              Y +   SGD             +KW  +M +EM+ L+KN  WELV LPK  K +RCKW
Sbjct: 807  ATYTEAVVSGD------------REKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKW 854

Query: 3571 VFRKKETQSDKEGERFKARLMENRFSQREGIEYNEIFSPVVKH 3699
            +F++KE  S  E  RFKARL+   FSQ  G++YN++FSPVVKH
Sbjct: 855  IFKRKEGLSPSEPPRFKARLVAKGFSQIVGVDYNDVFSPVVKH 897



 Score =  163 bits (412), Expect(5) = e-161
 Identities = 101/241 (41%), Positives = 147/241 (60%), Gaps = 5/241 (2%)
 Frame = +2

Query: 3704 IRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLYGL 3883
            IR   SIV   D+ELEQLDVKT FLHG+LE++IY+  PEGFI P KE  V  LK+SLYGL
Sbjct: 900  IRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGL 959

Query: 3884 KQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDDIVDSSKEEVRYS 4063
            KQSPR+WY +FD+FM+++G+ RS +D CVY +   +GS + L LYVDDI+ ++K + + +
Sbjct: 960  KQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIK-FVNGSPIYLLLYVDDILIAAKSKEQIT 1018

Query: 4064 SVE-----EFVEQ*ILHEGSWFSQENPRYGNSQGLSGRKIVANSERICAEGLGEV*HEQC 4228
            +++     EF  + +         E  R  NS  L   +     + +    + +      
Sbjct: 1019 TLKKQLSSEFDMKDLGAAKKILGMEITRDKNSGLLFLSQQSYIKKVLQCFNMHDAKPVST 1078

Query: 4229 *TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAISVVSM 4408
              + H   S  Q       TD+D VEY+S++ Y++ +G LMYAMVC+RP++ HA+S+VS 
Sbjct: 1079 PIAPHFKLSALQ----CANTDED-VEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSR 1133

Query: 4409 Y 4411
            Y
Sbjct: 1134 Y 1134



 Score =  136 bits (342), Expect(5) = e-161
 Identities = 94/318 (29%), Positives = 168/318 (52%), Gaps = 5/318 (1%)
 Frame = +1

Query: 1288 SQSLCQTDYIWRRNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLVLVSLP 1467
            S+ L    +I  + +  +++E   + NHI+ F  ++  L S++V+ D+E+  LL+L SLP
Sbjct: 95   SKDLTSKMHIKMKLFSHKLQESGSVLNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLP 154

Query: 1468 DSYSTIQTTLLIGNKKLAVDDVMEAVLDQDKFRGITSRNQGDSFLAFLNRCGRGFNQKKY 1647
             SY   + T+L+   +L + +V EA+ +++K +G+   +   S    L   GR   Q+ Y
Sbjct: 155  SSYENFRDTILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVKGRS-EQRTY 213

Query: 1648 SD-KEQEMSMSRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKKKGNRIENSANVAEQT 1824
            +D  +++ S SR   K + +    +C +K H   +   L+ + K+K              
Sbjct: 214  NDSNDRDKSKSRGRSKSRGKKFCKYCKKKIHFIKECWKLQNKEKRK-------------- 259

Query: 1825 DVCSDEELYTVTENKVS-*GDLLSVKDS--SNIID*YMDFRCSFHMSPHMD*FDTFTSC- 1992
               SD +   VT  K S  GD L V     ++  +  +D  CSFH+  + D F ++ S  
Sbjct: 260  ---SDGKASVVTSAKNSDSGDCLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYKSVQ 316

Query: 1993 NGGTILLGNNAVCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGCSIS 2172
            NG  + +GN+   ++ GIG++++K  DG+ + L DVR+IP + ++L+S+  LD+ G   S
Sbjct: 317  NGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYS 376

Query: 2173 VRDGVMKITKVSMVIMKG 2226
               GV+K++K S+V M G
Sbjct: 377  GSGGVVKVSKGSLVYMIG 394



 Score = 83.6 bits (205), Expect(5) = e-161
 Identities = 45/98 (45%), Positives = 55/98 (56%)
 Frame = +3

Query: 2247 YKLIGDTIVGGTTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKFC 2426
            Y L G T+ G  T +       N T LWHMRLGH SE  M  L KR LL G     +   
Sbjct: 402  YVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNM--- 458

Query: 2427 KFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVWGRS 2540
            KFC+ CV+ K ++V F    H +K ILDYVH+D+WG S
Sbjct: 459  KFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPS 496



 Score = 60.1 bits (144), Expect(5) = e-161
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2531 GPINHTLMGEAHYFVSFIDEYSKKVWVYFMKQKSE---VFKQ*KAKIEN*IGKKLEYFRL 2701
            GP     +G A Y ++ ID+YS+KVW YF+K K +    FK+ K  IE    K+++  R 
Sbjct: 494  GPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRT 553

Query: 2702 DNDTEYKNRSFLQFCQDENI 2761
            DN  E+ + +F  +C+ E I
Sbjct: 554  DNAGEFCSDAFDDYCRKEGI 573



 Score =  136 bits (342), Expect = 2e-28
 Identities = 94/233 (40%), Positives = 132/233 (56%), Gaps = 5/233 (2%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +LIAAK K  I  LK  LSSEF MKDLG+AKKILGMEI RD  +G  +L+Q+ Y++KVL+
Sbjct: 1007 ILIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDKNSGLLFLSQQSYIKKVLQ 1066

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQT-----RME*NIFPNYRMQM*WVV*CTPWYVQG 4373
             FNM++AK VSTP+A HF+LS+     T      M    + +    + + + C+    + 
Sbjct: 1067 CFNMHDAKPVSTPIAPHFKLSALQCANTDEDVEYMSRVPYSSAVGSLMYAMVCS----RP 1122

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSEVTWFVDSDYVG 4553
             +S+  S++   M N GKEH  AV+ IFRYL GT +  L F R   G  +  +VDSD+  
Sbjct: 1123 DLSHAMSLVSRYMTNPGKEHWKAVQWIFRYLRGTADACLKFGRTDKG--LIGYVDSDFAA 1180

Query: 4554 DLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAESIWH*QMQAMRLCGL 4712
            DLD  RS+T +                  +A++ T  ES+W   + A  LCG+
Sbjct: 1181 DLDKRRSLTEY------------------MAIAETCKESVWLKGLFA-ELCGV 1214


>XP_015080794.1 PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
          Length = 1892

 Score =  237 bits (605), Expect(4) = e-143
 Identities = 136/326 (41%), Positives = 189/326 (57%), Gaps = 14/326 (4%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            RH  V+ TP+QNG+ ERMNRTLLE+ARCM L A +SK FWA+A++TA + +NRSP + ID
Sbjct: 1153 RHKTVRHTPQQNGVAERMNRTLLEKARCMLLQAKMSKVFWAKAVHTASHIVNRSPASAID 1212

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
            +K P EV SG+P ++S ++IFG P Y H+       KL+PR K+ IF+GY DGVKGY+LW
Sbjct: 1213 FKTPNEVWSGEPSNYSYLRIFGCPTYYHV----NEGKLEPRSKKAIFVGYVDGVKGYKLW 1268

Query: 3124 NPVSKTKVISRDVVFNEKHMLNK-------SGNEESAASELQKHLVEVEFLEEIKKK*RD 3282
                   V+SRDV F+E  +L+        S NE +   EL   L +    E    + +D
Sbjct: 1269 CLSLLKFVVSRDVTFDESSILDPRKVSMELSRNENNEQVELPVELTKKRDQETQSDESKD 1328

Query: 3283 *RXXXXXXPREVL*SCERSGKASQQTSTEI*V**HGCLYLDCWYSG-------DPISYQN 3441
                    P  +    ++      +   E        L    + +        +P SY  
Sbjct: 1329 AEELASNEPYTIAKGRDKRRIRKPERLIE-----QENLIAQAFVAAEEEIKDLEPSSYIE 1383

Query: 3442 AIKSEDNDKWSISMTKEMEFLQKNQIWELVQLPKGSKAIRCKWVFRKKETQSDKEGERFK 3621
            A   +D  +W ++M +EME L +N+ W LV+ PKG + + CKWV++KKE   + E  RFK
Sbjct: 1384 ATSCKDAAQWQLAMMEEMESLHRNETWVLVKRPKGMRTVGCKWVYKKKEGIPEVEAARFK 1443

Query: 3622 ARLMENRFSQREGIEYNEIFSPVVKH 3699
            ARL+   FSQ+EGI+YNEIFSPVVKH
Sbjct: 1444 ARLVAKGFSQKEGIDYNEIFSPVVKH 1469



 Score =  206 bits (524), Expect(4) = e-143
 Identities = 145/397 (36%), Positives = 207/397 (52%), Gaps = 24/397 (6%)
 Frame = +2

Query: 3704 IRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLYGL 3883
            IR++L++V   D+EL+QLDVKT FLHGDLE+ IY+  PEGF+   KE  V  LKKSLYGL
Sbjct: 1472 IRVLLALVAQFDLELQQLDVKTAFLHGDLEETIYMDQPEGFLAEGKEDHVCQLKKSLYGL 1531

Query: 3884 KQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDDIVDSSKEEVRYS 4063
            KQSPR+WY +FD FM T+G+SRS +D CVY +     S++ L LYVDD++ ++      +
Sbjct: 1532 KQSPRQWYKRFDAFMTTHGFSRSAFDSCVYHKKMSGNSMIYLLLYVDDMLIAANNITEIN 1591

Query: 4064 SVEEF-----------VEQ*ILHEGSWFSQENPRYGNSQGLSGRKIVANSERICAEGLGE 4210
             +++            V + IL  G   S+EN     SQ    RK++       ++ +  
Sbjct: 1592 ILKKLLSKEFDMKDLGVAKKIL--GMEISRENGVVHLSQKRYIRKVLERFNMDMSKPVST 1649

Query: 4211 V*HEQC*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHA 4390
                        + S F++     P   D VE++SK+ YA+ +G +MYAMVCTRP+I  +
Sbjct: 1650 -----------PLASHFKLSELQMPQSMDEVEHMSKVPYASAVGSIMYAMVCTRPDIAQS 1698

Query: 4391 ISVVSMY----GKFRERALKCC------EMNFSLFSRYNQ---LWSYV*S*YCRK*GYMV 4531
            +SVVS Y    GK    A+K          +  L  R ++   +  YV S Y        
Sbjct: 1699 VSVVSKYMANPGKRHWEAVKWILRYLKGAPDVGLTFRKSEGISILGYVDSDYAGDLDRR- 1757

Query: 4532 C*FGLCWRLRCNEIYDRVCIHLLWKMYMLEVSVAVYGSIINNRGREYMALTDASNEALWL 4711
                   R     I+  V   + WK  +  +        ++    EYMA T+A  EA+WL
Sbjct: 1758 -------RSTTGYIFTLVGSAVSWKSTLQSIVA------LSTTEAEYMAATEAVKEAIWL 1804

Query: 4712 KGLVEKLGFK*GSIQIQCDSQSDVHLAKNQVFHVRTQ 4822
            KGLV +L        ++CDSQS +HL KNQ FH RT+
Sbjct: 1805 KGLVAELSSAQLKSILKCDSQSAIHLIKNQRFHERTK 1841



 Score = 79.0 bits (193), Expect(4) = e-143
 Identities = 38/79 (48%), Positives = 51/79 (64%)
 Frame = +3

Query: 2304 SNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKTRILKFCKFCKFCVYDKQRKVNFKVG 2483
            SN++  +LWHMRLGH S   ++ L  R LL G K   L+FC+ C   V  KQ+KV F  G
Sbjct: 999  SNDDKAKLWHMRLGHMSARGLEMLSNRNLLNGEKISTLEFCEHC---VLGKQKKVTFSTG 1055

Query: 2484 EHTSKNILDYVHSDVWGRS 2540
            +H +  +LDY+HSD+WG S
Sbjct: 1056 KHKTGGVLDYIHSDLWGPS 1074



 Score = 63.5 bits (153), Expect(4) = e-143
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2531 GPINHTLMGEAHYFVSFIDEYSKKVWVYFMKQKS---EVFKQ*KAKIEN*IGKKLEYFRL 2701
            GP      G   Y ++FID++S+KVWV F+K K    E FK+ K  +EN I +K++Y R 
Sbjct: 1072 GPSKLPSKGGKRYLLTFIDDFSRKVWVRFLKTKGDAFEAFKEWKILVENQIERKIKYLRT 1131

Query: 2702 DNDTEYKNRSFLQFCQDENI 2761
            DN  E+ +  F  FC+   I
Sbjct: 1132 DNGLEFCSEEFNDFCKVHGI 1151



 Score =  189 bits (480), Expect = 2e-44
 Identities = 135/317 (42%), Positives = 174/317 (54%), Gaps = 12/317 (3%)
 Frame = +3

Query: 4029 LLIAAKRKSDILQLKNLLSSEFYMKDLGSAKKILGMEIHRDCQAGKSWLTQKGYVQKVLE 4208
            +LIAA   ++I  LK LLS EF MKDLG AKKILGMEI R+   G   L+QK Y++KVLE
Sbjct: 1580 MLIAANNITEINILKKLLSKEFDMKDLGVAKKILGMEISRE--NGVVHLSQKRYIRKVLE 1637

Query: 4209 RFNMNNAKLVSTPLAAHFRLSSQLSPQT-----RME*NIFPNYRMQM*WVV*CTPWYVQG 4373
            RFNM+ +K VSTPLA+HF+LS    PQ+      M    + +    + + + CT    + 
Sbjct: 1638 RFNMDMSKPVSTPLASHFKLSELQMPQSMDEVEHMSKVPYASAVGSIMYAMVCT----RP 1693

Query: 4374 QISYMQSVLLACMANSGKEH*NAVK*IFRYLAGTTNYGLMFDRDTAGSEVTWFVDSDYVG 4553
             I+   SV+   MAN GK H  AVK I RYL G  + GL F R + G  +  +VDSDY G
Sbjct: 1694 DIAQSVSVVSKYMANPGKRHWEAVKWILRYLKGAPDVGLTF-RKSEGISILGYVDSDYAG 1752

Query: 4554 DLDATRSMTGFVYTFCGRCICWRSVLQSTVALSTTEAE--SIWH*QMQAMRLCGL----- 4712
            DLD  RS TG+++T  G  + W+S LQS VALSTTEAE  +      +A+ L GL     
Sbjct: 1753 DLDRRRSTTGYIFTLVGSAVSWKSTLQSIVALSTTEAEYMAATEAVKEAIWLKGLVAELS 1812

Query: 4713 RD*LKNXXXXXXXXXXXXIVKAMFI*QRTRCSMSGHKILE*LNNGDIAVRKVHTKEIVAD 4892
               LK+            I    F  +     +  H I + +  G I V KV T +  AD
Sbjct: 1813 SAQLKSILKCDSQSAIHLIKNQRFHERTKHIDVRFHFIRDVVEKGAIKVEKVITDDNAAD 1872

Query: 4893 MLSKSVTTEKFKHCLDL 4943
            ML+K V   KF HC DL
Sbjct: 1873 MLTKIVPLAKFAHCKDL 1889


>BAB09923.1 copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  186 bits (473), Expect(5) = e-140
 Identities = 130/395 (32%), Positives = 202/395 (51%), Gaps = 22/395 (5%)
 Frame = +2

Query: 3704 IRLILSIVTS*DMELEQLDVKTTFLHGDLEKKIYIKHPEGFIEPWKEGLVFSLKKSLYGL 3883
            IR +LSIV   DMELEQLDVKT FLHG+L++ I +  PEG+ +      V  LKKSLYGL
Sbjct: 917  IRYLLSIVVQFDMELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGL 976

Query: 3884 KQSPRRWYMKFDNFMVTYGYSRS*YDPCVYFRTHDDGSLVLLTLYVDDIVDSSKEEVRYS 4063
            KQSPR+W  +FD+FM+  GY RS Y+PCVY +  +DGS + L LYVDD++ +S+ + +  
Sbjct: 977  KQSPRQWNQRFDSFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQ 1036

Query: 4064 SVEEFVEQ*ILHEGSWFSQENPRYGNSQGLSGRKIVANSER---------ICAEGLGEV* 4216
             ++E + +           E    G ++ + G +I  N E+           A  L    
Sbjct: 1037 KLKESLNR---------EFEMKDLGPARKILGMEITRNREQGILDLSQSEYVAGVLRAFG 1087

Query: 4217 HEQC*TS*HSVGSTFQVIFTVKPTDKDGVEYISKLSYANVMGCLMYAMVCTRPNILHAIS 4396
             +Q   S   +G+ F++    + T     EY+  + Y N +G +MY+M+ +RP++ + + 
Sbjct: 1088 MDQSKVSQTPLGAHFKLRAANEKTLARDAEYMKLVPYPNAIGSIMYSMIGSRPDLAYPVG 1147

Query: 4397 VVSMY-----------GKFRERALKCCEMNFSLFSRYN--QLWSYV*S*YCRK*GYMVC* 4537
            VVS +            K+  R +K  +     F + +  ++  Y  S Y          
Sbjct: 1148 VVSRFMSKPSKEHWQAVKWVMRYMKGTQDTCLRFKKDDKFEIRGYCDSDYATDLDRRRSI 1207

Query: 4538 FGLCWRLRCNEIYDRVCIHLLWKMYMLEVSVAVYGSIINNRGREYMALTDASNEALWLKG 4717
             G  +    N I         WK  +  V        ++    EYMAL +A  EA+WL+G
Sbjct: 1208 TGFVFTAGGNTI--------SWKSGLQRVVA------LSTTEAEYMALAEAVKEAIWLRG 1253

Query: 4718 LVEKLGFK*GSIQIQCDSQSDVHLAKNQVFHVRTQ 4822
            L  ++GF+  ++++ CDSQS + L+KN V H RT+
Sbjct: 1254 LAAEMGFEQDAVEVMCDSQSAIALSKNSVHHERTK 1288



 Score =  179 bits (453), Expect(5) = e-140
 Identities = 124/350 (35%), Positives = 177/350 (50%), Gaps = 37/350 (10%)
 Frame = +1

Query: 2764 RHFLVKRTPEQNGIVERMNRTLLERARCMRLNA*LSKSFWAEALNTACYQINRSP*AGID 2943
            RH     TP+QNG+ ERMNRT++ + RCM   + L K FWAEA +TA + IN+SP + I+
Sbjct: 575  RHRTCAYTPQQNGVAERMNRTIMNKVRCMLSESGLGKQFWAEAASTAVFLINKSPSSSIE 634

Query: 2944 YKIPEEV*SGKPIDFSLMKIFGYPAYVHLLVEKR*SKLDPRFKEWIFLGYEDGVKGYRLW 3123
            + IPEE  +G P D+ ++K FG  AY+H        KL+PR K+ IFLGY DGVK +++W
Sbjct: 635  FDIPEEKWTGHPPDYKILKKFGSVAYIH----SDQGKLNPRAKKGIFLGYPDGVKRFKVW 690

Query: 3124 NPVSKTKVISRDVVFNEKHMLNKSGNEESAASELQKHLVEVE-FLEEIKKK*RD*RXXXX 3300
                +  V+SRD+VF E  M  +   +++  SE  K L EVE  L E+K    D      
Sbjct: 691  LLEDRKCVVSRDIVFQENQMYKEL--QKNDMSEEDKQLTEVERTLIELKNLSADDENQSE 748

Query: 3301 XXPREVL*SCERSGKASQQTSTEI*V**HGCL--YLDCWYSGDPISYQNAIKS---EDND 3465
                        +  AS+    E       CL  YL    + D I  Q        E++D
Sbjct: 749  GGDNSNQEQASTTRSASKDKQVEETDSDDDCLENYL---LARDRIRRQIRAPQRFVEEDD 805

Query: 3466 K---WSISMTKEMEFLQKNQIWELVQLP----------------------------KGSK 3552
                ++++MT++ E  +     E ++ P                            +G +
Sbjct: 806  SLVGFALTMTEDGEVYEPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKR 865

Query: 3553 AIRCKWVFRKKETQSDKEGERFKARLMENRFSQREGIEYNEIFSPVVKHI 3702
             I CKW+F++K      E  R+KARL+   FSQREGI+Y EIFSPVVKH+
Sbjct: 866  VIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHV 915



 Score =  118 bits (296), Expect(5) = e-140
 Identities = 87/323 (26%), Positives = 157/323 (48%), Gaps = 5/323 (1%)
 Frame = +1

Query: 1282 FTSQSLCQTDYIWRRNYRLRMEEESYLTNHINEFNRLMT*LTSIDVKLDEENKALLVLVS 1461
            F ++SL    Y+ +R Y  +M E   +  ++N+F +L++ L ++ V + +E++A+++L+S
Sbjct: 112  FMAKSLPNRIYLKQRLYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMS 171

Query: 1462 LPDSYSTIQTTLLIGNKKLAVDDVMEAVLDQDKFRGITSR---NQGDSFLAFLNRCGRGF 1632
            LP  +  ++ TL      L ++++  A+  +    G + +   N  D    F+   GR  
Sbjct: 172  LPRQFDQLKETLKYCKTTLHLEEITSAIRSKILELGASGKLLKNNSDGL--FVQDRGRSE 229

Query: 1633 NQKKYSDKEQEMSMSRPGKKDKSQVEYYHCHEKDHCKNQRPSLKKENKK--KGNRIENSA 1806
             + K  +K +  S S+   K       + C ++ H K Q    K+ NK+     R E S 
Sbjct: 230  TRGKGPNKNKSRSKSKGAGKT-----CWICGKEGHFKKQCYVWKERNKQGSTSERGEAST 284

Query: 1807 NVAEQTDVCSDEELYTVTENKVS*GDLLSVKDSSNIID*YMDFRCSFHMSPHMD*FDTFT 1986
              A  TD  +      +  ++   G      D+       +D  CSFHM+   D    F 
Sbjct: 285  VTARVTDAAA------LVVSRALLGFAEVTPDTW-----ILDTGCSFHMTCRKDWIIDFK 333

Query: 1987 SCNGGTILLGNNAVCKVTGIGTIKVKMFDGVVKILGDVRYIPELKKSLLSVGVLDSIGCS 2166
                G + +GN+   +V GIG +++K  DG   +L DVRYIPE+ K+L+S+G L+  GC 
Sbjct: 334  ETASGKVRMGNDTYSEVKGIGDVRIKNEDGSTILLTDVRYIPEMSKNLISLGTLEDKGCW 393

Query: 2167 ISVRDGVMKITKVSMVIMKG*KK 2235
               + G++ I K  + ++ G K+
Sbjct: 394  FESKKGILTIFKNDLTVLTGKKE 416



 Score = 62.4 bits (150), Expect(5) = e-140
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
 Frame = +2

Query: 2552 MGEAHYFVSFIDEYSKKVWVYFMKQKSEVFK---Q*KAKIEN*IGKKLEYFRLDNDTEYK 2722
            +G+  YF++FID+++++ W+YF++ K E F    + K +IEN   KKL+    DN  E+ 
Sbjct: 501  IGKCQYFITFIDDFTRRTWIYFIRTKDEAFSKFVEWKTQIENQQDKKLKILITDNGLEFC 560

Query: 2723 NRSFLQFCQDENI 2761
            N+ F  FC+ E +
Sbjct: 561  NQEFDSFCRKEGV 573



 Score = 51.2 bits (121), Expect(5) = e-140
 Identities = 31/102 (30%), Positives = 46/102 (45%)
 Frame = +3

Query: 2229 EKKGTFYKLIGDTIVGGTTISM*DNSNNNSTELWHMRLGHFSEGEMK*LHKR*LL*GLKT 2408
            +K+ T Y L G T+ G   +    +   + T LWH RLGH     ++ L  +  L     
Sbjct: 414  KKESTLYFLQGTTLAGEANVI---DKEKDETSLWHSRLGHIGAKGLQVLVSKGHL----- 465

Query: 2409 RILKFCKFCKFCVYDKQRKVNFKVGEHTSKNILDYVHSDVWG 2534
                          DK   ++F   +H +K+ LDYVHSD+WG
Sbjct: 466  --------------DKNIMISFGAAKHVTKDKLDYVHSDLWG 493