BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00039464
         (485 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADB85290.1| putative retrotransposon protein [Phyllostachys e...    91   4e-28
emb|CAH66499.1| H0321H01.8 [Oryza sativa Indica Group]                 93   5e-27
gb|AAL76001.1|AF466646_9 putative gag-pol polyprotein [Zea mays]       82   1e-26
gb|AAL68644.1|AF458768_1 polyprotein [Oryza sativa Japonica Group]     85   1e-26
gb|AAP54937.2| retrotransposon protein, putative, unclassified [...    84   2e-26

>gb|ADB85290.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 592

 Score = 91.3 bits (225), Expect(3) = 4e-28
 Identities = 44/72 (61%), Positives = 51/72 (70%)
 Frame = +1

Query: 1   KKQN*KYSIYPGLLQPLMIPDKPWDGIAMDFIEGLPLSEGNNAILVVVDRFSKYEHFIGL 180
           +K N ++  YPGLLQP+ IP+  W  I+MDFIEGLP SE    ILVVVDRF+KY HFI L
Sbjct: 350 QKNNCEHVPYPGLLQPIPIPEMAWTHISMDFIEGLPKSEDKEVILVVVDRFTKYSHFIAL 409

Query: 181 KHPLTVVFVAKV 216
            HP TV  V KV
Sbjct: 410 SHPFTVQHVVKV 421



 Score = 53.1 bits (126), Expect(3) = 4e-28
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +2

Query: 287 STLWQSLFQQLGVKLCTSSSYHSQSDGQAERLNRCLE 397
           S LWQ LF+ LGVKL  S+SYH ++DGQ +R+N+CLE
Sbjct: 446 SHLWQDLFKTLGVKLRLSTSYHPETDGQTKRVNQCLE 482



 Score = 25.4 bits (54), Expect(3) = 4e-28
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 216 FVDRAYRMHGLPQTIVSAGKKKF*VHFGSPYF 311
           FVD  ++ HGLP  I++     F  H     F
Sbjct: 422 FVDNVFKHHGLPSVIITNRDMVFTSHLWQDLF 453


>emb|CAH66499.1| H0321H01.8 [Oryza sativa Indica Group]
          Length = 1602

 Score = 92.8 bits (229), Expect(2) = 5e-27
 Identities = 45/80 (56%), Positives = 57/80 (71%)
 Frame = +1

Query: 28   YPGLLQPLMIPDKPWDGIAMDFIEGLPLSEGNNAILVVVDRFSKYEHFIGLKHPLTVVFV 207
            YPGLLQPL +P+  W  +++DFIEGLP S G N ILVVVDRFSKY HF+ LKHP T + V
Sbjct: 1162 YPGLLQPLPVPEGSWQAVSLDFIEGLPKSAGYNCILVVVDRFSKYAHFVALKHPFTAIDV 1221

Query: 208  AKVLWIAHIGCMGCLKQLLV 267
            A+  ++ HI  +  L Q +V
Sbjct: 1222 AQA-YMFHIYKLHGLPQTIV 1240



 Score = 53.1 bits (126), Expect(2) = 5e-27
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = +2

Query: 272  EKKILSTLWQSLFQQLGVKLCTSSSYHSQSDGQAERLNRCLE 397
            +K   S LW+ LF + G KL  SS+YH QSDGQ ER+N+CLE
Sbjct: 1244 DKIFTSQLWEQLFLRAGTKLHYSSAYHPQSDGQTERVNQCLE 1285


>gb|AAL76001.1|AF466646_9 putative gag-pol polyprotein [Zea mays]
          Length = 2396

 Score = 82.4 bits (202), Expect(3) = 1e-26
 Identities = 39/63 (61%), Positives = 46/63 (73%)
 Frame = +1

Query: 28   YPGLLQPLMIPDKPWDGIAMDFIEGLPLSEGNNAILVVVDRFSKYEHFIGLKHPLTVVFV 207
            YPGLLQPL +P + W  I++DFIEGLP S   N ILVVVD+FSKY HF+ L HP T   V
Sbjct: 1180 YPGLLQPLEVPPQAWHTISLDFIEGLPRSAHYNCILVVVDKFSKYGHFLPLLHPFTAAKV 1239

Query: 208  AKV 216
            A+V
Sbjct: 1240 ARV 1242



 Score = 55.1 bits (131), Expect(3) = 1e-26
 Identities = 25/37 (67%), Positives = 27/37 (72%)
 Frame = +2

Query: 287  STLWQSLFQQLGVKLCTSSSYHSQSDGQAERLNRCLE 397
            S+ WQ LFQ  G  L  SSSYH QSDGQ ERLN+CLE
Sbjct: 1267 SSFWQQLFQITGTNLSMSSSYHPQSDGQTERLNQCLE 1303



 Score = 27.3 bits (59), Expect(3) = 1e-26
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 216  FVDRAYRMHGLPQTIVSAGKKKF*VHFGSPYF 311
            F+D  Y++HGLP  I+S   + F   F    F
Sbjct: 1243 FLDNVYKLHGLPVNIISDRDRIFTSSFWQQLF 1274


>gb|AAL68644.1|AF458768_1 polyprotein [Oryza sativa Japonica Group]
          Length = 933

 Score = 84.7 bits (208), Expect(3) = 1e-26
 Identities = 41/68 (60%), Positives = 49/68 (72%)
 Frame = +1

Query: 22  SIYPGLLQPLMIPDKPWDGIAMDFIEGLPLSEGNNAILVVVDRFSKYEHFIGLKHPLTVV 201
           S YPGLLQPL +PD  W  I+MDFIEGLP S   + ILVVVD+FSKY HF+ L HP + +
Sbjct: 516 SKYPGLLQPLPVPDGAWQIISMDFIEGLPKSYHQDCILVVVDKFSKYAHFMPLSHPFSAL 575

Query: 202 FVAKVLWI 225
            VAKV  +
Sbjct: 576 DVAKVFML 583



 Score = 53.5 bits (127), Expect(3) = 1e-26
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = +2

Query: 272 EKKILSTLWQSLFQQLGVKLCTSSSYHSQSDGQAERLNRCLE 397
           +K   S LW+ LF + G KL  SS+YH QSDGQ ER+N+CLE
Sbjct: 600 DKIFTSALWEQLFLRSGTKLHLSSAYHPQSDGQTERVNQCLE 641



 Score = 26.6 bits (57), Expect(3) = 1e-26
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 216 FVDRAYRMHGLPQTIVSAGKKKF 284
           F+   Y++HGLPQ I+S   K F
Sbjct: 581 FMLNVYKLHGLPQIIISDRDKIF 603


>gb|AAP54937.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1477

 Score = 83.6 bits (205), Expect(3) = 2e-26
 Identities = 40/63 (63%), Positives = 45/63 (71%)
 Frame = +1

Query: 28   YPGLLQPLMIPDKPWDGIAMDFIEGLPLSEGNNAILVVVDRFSKYEHFIGLKHPLTVVFV 207
            YPGLLQPL +P   W  I+MDFIEGLP S+  N ILVVVD+FSKY HF+ L HP T   V
Sbjct: 1135 YPGLLQPLPVPKGAWQVISMDFIEGLPTSDKYNCILVVVDKFSKYAHFLPLTHPFTAFSV 1194

Query: 208  AKV 216
            A V
Sbjct: 1195 ATV 1197



 Score = 53.9 bits (128), Expect(3) = 2e-26
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = +2

Query: 272  EKKILSTLWQSLFQQLGVKLCTSSSYHSQSDGQAERLNRCLE 397
            ++   S LW+ LF + G KL  SSSYH Q+DGQ ER+NRCLE
Sbjct: 1217 DRVFTSQLWEHLFTKSGTKLHMSSSYHPQTDGQTERVNRCLE 1258



 Score = 26.6 bits (57), Expect(3) = 2e-26
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 216  FVDRAYRMHGLPQTIVSAGKKKF 284
            F+   Y++HG+PQ I+S   + F
Sbjct: 1198 FMKNVYKLHGMPQVIISDRDRVF 1220