BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00039378
         (567 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX95954.1| retrotransposon protein, putative, unclassified [...    56   5e-06

>gb|AAX95954.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|77550300|gb|ABA93097.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa Japonica Group]
          Length = 750

 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
 Frame = +1

Query: 4   FIGVGFSQLVPNSYIHILAFIAFCHE-VGVEPSLDFFFTVY--KVSQTREKGFKVLGKHA 174
           F G+    L PNS +HI  FI  C   +G+ P+   F  ++  K    + K   V G   
Sbjct: 80  FYGISLHNLNPNSIVHIANFIHACEAFLGIRPNFALFHRIFFLKPQPNKSKPCVVGGARF 139

Query: 175 SKTGEKFERRSLVNTPSSNRGWHKGWFFVKGLEIASLPDWTTSEVVSAD 321
              G   ++   +   +SN+GWH  WF+V+ LE A LP+++    V  D
Sbjct: 140 QLRGTLSQKYFSMPCKTSNKGWHANWFYVQNLEPA-LPEYSCLPPVYQD 187