BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00039097
         (544 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD72871.1| RNA-dependent RNA polymerase [Helicobasidium mom...    72   7e-11
gb|AGC24231.1| RNA-dependent RNA polymerase [Sclerotinia sclerot...    69   6e-10
gb|AAR01970.1| RNA-dependent RNA polymerase [Cryphonectria cuben...    67   2e-09
gb|ABQ65153.3| RNA-dependent RNA polymerase [Botrytis cinerea mi...    66   4e-09
ref|YP_002284334.1| RNA-dependent RNA polymerase [Botrytis ciner...    66   4e-09

>dbj|BAD72871.1| RNA-dependent RNA polymerase [Helicobasidium mompa mitovirus 1-18]
          Length = 700

 Score = 71.6 bits (174), Expect = 7e-11
 Identities = 47/123 (38%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
 Frame = +1

Query: 4   LRPLHDWVMKVLRSIWMDGTFDQP--KPLLRLIGKRELFSFDLKSATXXXXXXXXXXXXX 177
           L+PLHD  MK LRSI  D TF Q     +L+L    + +SFDLKSAT             
Sbjct: 281 LKPLHDKEMKALRSIRQDLTFYQGIGPQVLKLHPGSKYYSFDLKSATDRFPVELQEKVIQ 340

Query: 178 XXXXXXFSRTWQFLMQQVVFRXXXXXXXXXRGWLFQFTRGQPLGYYSSWPVFTLTHHMLV 357
                 F+R+W+ L+    F               ++  GQP+G YSSW  FTL HHM+V
Sbjct: 341 AFYGEDFARSWRSLITDQAFAYGESEV--------RYGCGQPIGAYSSWATFTLCHHMIV 392

Query: 358 WML 366
            ML
Sbjct: 393 QML 395


>gb|AGC24231.1| RNA-dependent RNA polymerase [Sclerotinia sclerotiorum mitovirus 2]
          Length = 678

 Score = 68.6 bits (166), Expect = 6e-10
 Identities = 49/138 (35%), Positives = 65/138 (47%), Gaps = 6/138 (4%)
 Frame = +1

Query: 4   LRPLHDWVMKVLRSIWMDGTFDQPKPLLRLI-GKRELFSFDLKSATXXXXXXXXXXXXXX 180
           L PLHD + +VL+SI  D TFDQ K    L+ G    +SFDL SAT              
Sbjct: 261 LTPLHDRLYRVLKSIPQDCTFDQNKGFKDLLYGGGPYYSFDLTSATDRFPIFVQEMVLSW 320

Query: 181 XXXXXFSRTWQFLMQQVVFRXXXXXXXXXRGWLFQFTRGQPLGYYSSWPVFTLTHHMLVW 360
                ++  W   M ++ FR          G   +F RGQPLG  SSW +FT++HH +V 
Sbjct: 321 LVNEQYASAWVQAMVKLPFRTP-------EGTEVKFERGQPLGAKSSWAMFTISHHFVVQ 373

Query: 361 -----MLVDFKDYAILED 399
                + +D   Y IL D
Sbjct: 374 YCAMVLNIDNPRYKILGD 391


>gb|AAR01970.1| RNA-dependent RNA polymerase [Cryphonectria cubensis mitovirus 1a]
           gi|37719732|gb|AAR01971.1| RNA-dependent RNA polymerase
           [Cryphonectria cubensis mitovirus 1b]
           gi|37719734|gb|AAR01972.1| RNA-dependent RNA polymerase
           [Cryphonectria cubensis mitovirus 1c]
          Length = 744

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 7/171 (4%)
 Frame = +1

Query: 1   LLRPLHDWVMKVLRSIWMDGTFDQPKPLLRLIGK---RELFSFDLKSATXXXXXXXXXXX 171
           +L PLHDW    LRSI  D TF+Q + L ++  +   +  +S+DL++AT           
Sbjct: 309 VLSPLHDWAYATLRSIPQDCTFNQAEGLSKVTARPSQKYFYSYDLEAATDRFPIQFQKKV 368

Query: 172 XXXXXXXXFSRTWQFLMQQVVFRXXXXXXXXXRGWLFQFTRGQPLGYYSSWPVFTLTHHM 351
                   +++ W  +M Q  FR          G       GQPLG  SSW +FTL HH+
Sbjct: 369 LSLIFNTTYAQAWAEIMTQEPFRVKGLSDPLRWG------AGQPLGAKSSWAIFTLCHHL 422

Query: 352 LVWMLVDFKD----YAILED*SQQILKYEHPSTVATSSDSLLSIAQNEEKN 492
           +V +     +    Y IL D    +L+    +TV     S L ++ +E K+
Sbjct: 423 VVHIAAVRTNSDPYYVILGD--DIVLRGSRLATVYKRIMSELGVSISETKS 471


>gb|ABQ65153.3| RNA-dependent RNA polymerase [Botrytis cinerea mitovirus 1]
          Length = 738

 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
 Frame = +1

Query: 1   LLRPLHDWVMKVLRSIWMDGTFDQPKPLLRL--IGKRELFSFDLKSATXXXXXXXXXXXX 174
           +L PLH  +  ++R +  DGTFDQ KPL RL  +  ++ FSFDL +AT            
Sbjct: 309 ILNPLHKKIFSIIRELPTDGTFDQLKPLDRLHELSTQDRFSFDLSAATDRLPLTLQKDIL 368

Query: 175 XXXXXXXFSRTWQFLMQQVVFRXXXXXXXXXRGWLFQFTRGQPLGYYSSWPVFTLTHHML 354
                  F+  W   +    ++               ++ GQP+G  SSW +  LTHH +
Sbjct: 369 TLLVSPSFAEAWGTALVGRPYKWKFGTTEDE----LMYSVGQPMGALSSWGMLALTHHTI 424

Query: 355 VWMLVD-------FKDYAILED 399
           V +          F DYA+L D
Sbjct: 425 VQVAASRAGYKDLFLDYALLGD 446


>ref|YP_002284334.1| RNA-dependent RNA polymerase [Botrytis cinerea debilitation-related
           virus]
          Length = 529

 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
 Frame = +1

Query: 1   LLRPLHDWVMKVLRSIWMDGTFDQPKPLLRL--IGKRELFSFDLKSATXXXXXXXXXXXX 174
           +L PLH  +  ++R +  DGTFDQ KPL RL  +  ++ FSFDL +AT            
Sbjct: 309 ILNPLHKKIFSIIRELPTDGTFDQLKPLDRLHELSTQDRFSFDLSAATDRLPLTLQKDIL 368

Query: 175 XXXXXXXFSRTWQFLMQQVVFRXXXXXXXXXRGWLFQFTRGQPLGYYSSWPVFTLTHHML 354
                  F+  W   +    ++               ++ GQP+G  SSW +  LTHH +
Sbjct: 369 TLLVSPSFAEAWGTALVGRPYKWKFGTTEDE----LMYSVGQPMGALSSWGMLALTHHTI 424

Query: 355 VWMLVD-------FKDYAILED 399
           V +          F DYA+L D
Sbjct: 425 VQVAASRAGYKDLFLDYALLGD 446