BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00038280
         (643 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...   175   6e-42
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   169   4e-40
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   167   1e-39
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   167   1e-39
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               164   1e-38

>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score =  175 bits (444), Expect = 6e-42
 Identities = 93/213 (43%), Positives = 122/213 (57%), Gaps = 2/213 (0%)
 Frame = +1

Query: 7    SRWNQNKILTIYNNEGVLVQDQTNIQHVAVDYFQNLLGLASNDYPGY--EELKPFISKQI 180
            +R  QN I  I   +G     + +I++    +FQ  L L  NDY G   E+L   +    
Sbjct: 797  ARAAQNSIREIQKEDGSTATTKDDIKNETERFFQEFLQLIPNDYEGITVEKLTSLLPYHC 856

Query: 181  TPLQASALLTPILDEEILATLKSMKPNKSPGPDGFNVTFFLHCWDIIGADFTDVVHYFFE 360
            +P +   L   +  +EI   L SM  +KSPGPDG+   F+   WDIIGA+F   V  FFE
Sbjct: 857  SPAEKDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFE 916

Query: 361  SGHMPGGINVTAIALIPKSENPSSMSDFRPISCCNTVYKCISKIIANRLKKVLPTLIDCV 540
             G +P G+N T +ALIPK      M D+RPISCCN +YK ISKIIANRLK VLP  I   
Sbjct: 917  KGFLPKGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGN 976

Query: 541  QSAFISGRCISDNILLAQELFSNYHRTSGPARC 639
            QSAF+  R + +N+LLA EL  +YH+ +   RC
Sbjct: 977  QSAFVKDRLLIENLLLATELVKDYHKDTISGRC 1009


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  169 bits (428), Expect = 4e-40
 Identities = 92/213 (43%), Positives = 123/213 (57%), Gaps = 2/213 (0%)
 Frame = +1

Query: 7    SRWNQNKILTIYNNEGVLVQDQTNIQHVAVDYFQNLLGLASNDYPGYE--ELKPFISKQI 180
            +R   N I  I +N+G++      I+  A  +F+  L L  ND+ G    EL+  +  + 
Sbjct: 382  AREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFLQLIPNDFEGVTITELQQLLPVRC 441

Query: 181  TPLQASALLTPILDEEILATLKSMKPNKSPGPDGFNVTFFLHCWDIIGADFTDVVHYFFE 360
            +     +L+ P+  EEI   L  M  +KSPGPDG+   FF   W+IIG +FT  V  FF 
Sbjct: 442  SDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFT 501

Query: 361  SGHMPGGINVTAIALIPKSENPSSMSDFRPISCCNTVYKCISKIIANRLKKVLPTLIDCV 540
             G +P GIN T +ALIPK      M D+RPISCCN +YK ISKIIANRLK VLP  I   
Sbjct: 502  KGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGN 561

Query: 541  QSAFISGRCISDNILLAQELFSNYHRTSGPARC 639
            QSAF+  R + +N+LLA EL  +YH+ +   RC
Sbjct: 562  QSAFVKDRLLIENLLLATELVKDYHKDTISTRC 594


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  167 bits (424), Expect = 1e-39
 Identities = 90/215 (41%), Positives = 125/215 (58%), Gaps = 2/215 (0%)
 Frame = +1

Query: 1   IKSRWNQNKILTIYNNEGVLVQDQTNIQHVAVDYFQNLLGLASNDYPGY--EELKPFISK 174
           I +R   N I  I   +G++V  Q +IQ  AV+YFQ+ L     DY G   EEL+  +  
Sbjct: 101 ITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTIPADYEGMCVEELENLLPF 160

Query: 175 QITPLQASALLTPILDEEILATLKSMKPNKSPGPDGFNVTFFLHCWDIIGADFTDVVHYF 354
           + +      L   +  EEI   + SM  +KSPGPDG+   F+   W+IIG +    +  F
Sbjct: 161 RCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSF 220

Query: 355 FESGHMPGGINVTAIALIPKSENPSSMSDFRPISCCNTVYKCISKIIANRLKKVLPTLID 534
           F  G +P G+N T +ALIPK +    + D+RPISCCN +YK ISKI+ANRLK++LP  I 
Sbjct: 221 FAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIV 280

Query: 535 CVQSAFISGRCISDNILLAQELFSNYHRTSGPARC 639
             QSAF+  R + +N+LLA EL  +YH+ S   RC
Sbjct: 281 GNQSAFVKDRLLIENVLLATELVKDYHKDSISTRC 315


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  167 bits (424), Expect = 1e-39
 Identities = 90/215 (41%), Positives = 125/215 (58%), Gaps = 2/215 (0%)
 Frame = +1

Query: 1   IKSRWNQNKILTIYNNEGVLVQDQTNIQHVAVDYFQNLLGLASNDYPGY--EELKPFISK 174
           + +R  QN I  I  ++G +   +  I+  A  +F+  L L  ND+ G   EEL+  +  
Sbjct: 268 VVAREAQNSIREIICHDGSVASQEEKIKTEAEHHFREFLQLIPNDFEGIAVEELQDLLPY 327

Query: 175 QITPLQASALLTPILDEEILATLKSMKPNKSPGPDGFNVTFFLHCWDIIGADFTDVVHYF 354
           + +      L   +  EEI   + SM  +KSPGPDG+   F+   W+IIGA+F   +  F
Sbjct: 328 RCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSF 387

Query: 355 FESGHMPGGINVTAIALIPKSENPSSMSDFRPISCCNTVYKCISKIIANRLKKVLPTLID 534
           F  G +P GIN T +ALIPK +    M D+RPISCCN +YK ISKIIANRLK VLP  I 
Sbjct: 388 FAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIV 447

Query: 535 CVQSAFISGRCISDNILLAQELFSNYHRTSGPARC 639
             QSAF+  R + +N+LLA E+  +YH+ S  +RC
Sbjct: 448 GNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRC 482


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  164 bits (415), Expect = 1e-38
 Identities = 95/212 (44%), Positives = 122/212 (57%), Gaps = 2/212 (0%)
 Frame = +1

Query: 10  RWNQNKILTIYNNEGVLVQDQTNIQHVAVDYFQNLLGLASNDYPGYE--ELKPFISKQIT 183
           R  +N I  IY  +G +VQ   +I   A  +F+  L L   D+ G E  EL+  +  + T
Sbjct: 31  RETKNMIKEIYCTDGRVVQGD-DIMVEAEKFFKEFLQLIPEDFVGVEVRELQDLLQFRCT 89

Query: 184 PLQASALLTPILDEEILATLKSMKPNKSPGPDGFNVTFFLHCWDIIGADFTDVVHYFFES 363
                 L   +  EEI   L SM  +KSPGPDG+   F+   WDIIG +FT  V  FF+ 
Sbjct: 90  NSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQK 149

Query: 364 GHMPGGINVTAIALIPKSENPSSMSDFRPISCCNTVYKCISKIIANRLKKVLPTLIDCVQ 543
           G +P GIN   +ALIPK      M D+RPISCCN +YK ISKIIANRLK +LP  I   Q
Sbjct: 150 GFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQ 209

Query: 544 SAFISGRCISDNILLAQELFSNYHRTSGPARC 639
           SAF+  R + +N+LLA EL  +YH+ S  ARC
Sbjct: 210 SAFVKDRLLIENLLLATELVKDYHKDSISARC 241