BLASTX nr result

ID: Panax21_contig00037800 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00037800
         (433 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524379.1| conserved hypothetical protein [Ricinus comm...    75   7e-12
ref|XP_004139751.1| PREDICTED: F-box/kelch-repeat protein At3g23...    60   2e-07
ref|XP_004171022.1| PREDICTED: F-box/kelch-repeat protein At3g23...    59   3e-07
ref|XP_002327285.1| predicted protein [Populus trichocarpa] gi|2...    59   5e-07
ref|XP_002282067.1| PREDICTED: F-box protein At3g07870-like [Vit...    52   8e-06

>ref|XP_002524379.1| conserved hypothetical protein [Ricinus communis]
           gi|223536340|gb|EEF37990.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 302

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
 Frame = -2

Query: 432 NLITKVGSALPRGSKDCGGHAECKCGLGIAFDKFNGVYKVVHVFAGAQTFQCEMFMLKNE 253
           NL+TK    LP    +C   A   CG  + F   +  YKVVH++A       E+F L + 
Sbjct: 91  NLVTKCHIILPPCPTNCPHKA---CGSAVGFYPRSKQYKVVHIYADGVGI--ELFALAS- 144

Query: 252 SLFLNSSKWKTIDGP--------SYMGNRKYFWDDPVSVDGRYFHWHVHSAEFVVSMDIV 97
               +++ WK + GP         Y     + W+DPV VDGRY HW+V S  +++SMD+ 
Sbjct: 145 ----SNNAWKLLPGPFLEDPDGRPYDVLSNFHWNDPVLVDGRYMHWYVESNRYIISMDVS 200

Query: 96  EEMFHKIRLP 67
           EE   K  LP
Sbjct: 201 EEKSVKTYLP 210


>ref|XP_004139751.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cucumis
           sativus]
          Length = 401

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
 Frame = -2

Query: 432 NLITKVGSALPRGSKDCGGHAECKCGLGIAFDKFNGVYKVVHVFAGAQTF-QCEMFMLKN 256
           N +T+  +ALP G+ +   H E     G A+D  +G YKVVH+F  A  +  CE+F+L  
Sbjct: 177 NPVTRKLTALPPGTLN-SSHNE---SYGFAYDNISGRYKVVHLFRDALMYISCEIFILGT 232

Query: 255 ESLFLNSSKWKTIDGPSYMGNRKYFWDDPVSVDGRYFHW--HVHSAEFVVSMDIVEEMFH 82
           E+       W+ +DGP + G   +F   PV   G   HW   V+ ++ + S++I  E F 
Sbjct: 233 EN-------WRAVDGPPF-GLFGWFGYKPVEAIGA-LHWIPQVNHSDCIASLEIENEKFQ 283

Query: 81  KIRLP 67
            I LP
Sbjct: 284 TIPLP 288


>ref|XP_004171022.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cucumis
           sativus]
          Length = 390

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
 Frame = -2

Query: 432 NLITKVGSALPRGSKDCGGHAECKCGLGIAFDKFNGVYKVVHVFAGAQTF-QCEMFMLKN 256
           N +T+  +ALP G+ +   H E     G A+D  +G YKVVH+F  A  +  CE+F+L  
Sbjct: 177 NPVTRKLTALPPGTLN-SSHNE---SYGFAYDNVSGRYKVVHLFRDALMYISCEIFILGT 232

Query: 255 ESLFLNSSKWKTIDGPSYMGNRKYFWDDPVSVDGRYFHW--HVHSAEFVVSMDIVEEMFH 82
           E+       W+ +DGP + G   +F   PV   G   HW   V+ ++ + S++I  E F 
Sbjct: 233 EN-------WRAVDGPPF-GLFGWFGYKPVEAIGA-LHWIPQVNHSDCIASLEIENEKFQ 283

Query: 81  KIRLP 67
            I LP
Sbjct: 284 TIPLP 288


>ref|XP_002327285.1| predicted protein [Populus trichocarpa] gi|222835655|gb|EEE74090.1|
           predicted protein [Populus trichocarpa]
          Length = 426

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
 Frame = -2

Query: 432 NLITKVGSALPRGSKDCGGHAECKCGLGIAFDKFNGVYKVVHVFAGAQTFQCEMFMLKNE 253
           N +T+    LP G+  C  H E     G A +   G YK+VH+F        E   +  E
Sbjct: 196 NPVTRKLITLPLGTL-CNYHKE---SYGFALNHVTGDYKLVHLFRD------EFEYVTCE 245

Query: 252 SLFLNSSKWKTIDGPSYMGNRKYFWDDPVSVDGRYFHW--HVHSAEFVVSMDIVEEMFHK 79
           +L L +  W+ ++GPS+ G   +F   PVS  G   HW   + +++F+VSM++  E FH 
Sbjct: 246 TLDLATRSWRAVNGPSF-GLFNWFGHAPVSAIGA-LHWIPQLDNSDFIVSMEVENERFHC 303

Query: 78  IRLPQPIT 55
           I LP   T
Sbjct: 304 IPLPHRCT 311


>ref|XP_002282067.1| PREDICTED: F-box protein At3g07870-like [Vitis vinifera]
          Length = 417

 Score = 52.4 bits (124), Expect(2) = 8e-06
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
 Frame = -2

Query: 432 NLITKVGSALPRGSKDCGGHAECKCGLGIAFDKFNGVYKVVHVFAGAQTFQCEMFMLKNE 253
           N +T+  + LP G+     H E     G A       YKVVH+F        E+  +  E
Sbjct: 185 NPVTRKLTELPLGTLS-QPHQE---SYGFALSYSTSEYKVVHLFHD------ELRYINCE 234

Query: 252 SLFLNSSKWKTIDGPSYMGNRKYFWDDPVSVDGRYFHW--HVHSAEFVVSMDIVEEMFHK 79
            L + +  W+ ++GPS+ G   +F   PVS  G   HW  H++  +++VS+ +  E FH 
Sbjct: 235 ILNVGTRTWRPVNGPSF-GLISWFGYKPVSAMGA-LHWVPHINDNDYIVSLHLENEKFHT 292

Query: 78  IRLPQ 64
           ++LP+
Sbjct: 293 VQLPK 297



 Score = 21.9 bits (45), Expect(2) = 8e-06
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 88  VSQDSSSTTHNQYSLLEMGGYLCLLSN 8
           V    S  TH+   ++EMGG LC +S+
Sbjct: 293 VQLPKSYRTHD--GIVEMGGSLCFVSH 317


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