BLASTX nr result

ID: Panax21_contig00037590 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00037590
         (417 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305384.1| predicted protein [Populus trichocarpa] gi|2...    63   3e-08
ref|XP_002527630.1| transcription factor, putative [Ricinus comm...    61   1e-07
emb|CBI21213.3| unnamed protein product [Vitis vinifera]               55   4e-06
ref|XP_002277074.1| PREDICTED: transcription factor TCP13 [Vitis...    55   4e-06
emb|CAN79810.1| hypothetical protein VITISV_014914 [Vitis vinifera]    55   4e-06

>ref|XP_002305384.1| predicted protein [Populus trichocarpa] gi|222848348|gb|EEE85895.1|
           predicted protein [Populus trichocarpa]
          Length = 365

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
 Frame = +3

Query: 3   LNAAKHEIDQLPPLQMPPGNLAQNPMLMRAFDNNNNTDSDHKSQGQFKLINSGGIINWDN 182
           LNAAKHEID+LPPL MPPGN + N   M    ++N   +   S+  FK+ N    ++W++
Sbjct: 98  LNAAKHEIDELPPLPMPPGNFSLNHQAM--LGSSNEVGASRSSKEVFKMNNG---VDWED 152

Query: 183 DPLELSTTTSNYWRD----HMKCKEVVGEEALAIHDDDKETWTKRMSSLDDHG--HGGDA 344
                  T  ++W        K KEV+ +       ++KE W KR     + G   G  A
Sbjct: 153 TS---GFTRPSFWNADAILRAKSKEVMTDPV-----NEKENWAKRDEEDKEDGSIEGNTA 204

Query: 345 YLFARA--NGSNSNSQTGLLNNVM 410
              + +    ++ +S  GL+NN M
Sbjct: 205 QALSSSFLQRASHSSLPGLINNAM 228


>ref|XP_002527630.1| transcription factor, putative [Ricinus communis]
           gi|223533004|gb|EEF34769.1| transcription factor,
           putative [Ricinus communis]
          Length = 377

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 50/152 (32%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
 Frame = +3

Query: 3   LNAAKHEIDQLPPLQMPPGNLAQNPMLMRAFDNNNNTDSDHKSQGQFKLINSGGIINWDN 182
           LNAAKHEID+LPPL MPP N   N  ++    +++   +   ++  FK+ +S   INWD+
Sbjct: 101 LNAAKHEIDELPPLPMPPMNFGLNHQML----SSHELGASQSNKEGFKVNSSS--INWDD 154

Query: 183 DPLELSTTTSNYWRDHM----KCKEVVGEEALAIHDDDKETWTKR-----MSSLDDHGHG 335
              +   T  N+W        K KEV  +       ++KE WTKR       S ++  + 
Sbjct: 155 ---QGGLTRPNFWNSDALLRGKSKEVARDSV-----NEKENWTKRNEEDEQESNEEGNNS 206

Query: 336 G-------DAYLFARANGSNSNSQTGLLNNVM 410
           G          LF RA  S S    G +NN M
Sbjct: 207 GRTQVPLSSTSLFPRATHS-STWAAGFINNPM 237


>emb|CBI21213.3| unnamed protein product [Vitis vinifera]
          Length = 465

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
 Frame = +3

Query: 3   LNAAKHEIDQLPPLQMPPGNLAQN--PMLMRAFDNNNNTDSDHKSQGQFKLINSGGIINW 176
           LNAAKHEID+LPPLQMPPGN  Q+  PM+      +    +   ++ + K+ N    I+W
Sbjct: 186 LNAAKHEIDELPPLQMPPGNFVQSHQPMI-----TSLEVGASQFNKEELKISNG---IDW 237

Query: 177 DNDPLELSTTTSNYWRDH----MKCKEVVGEEALAIHDDDKETWTKRMSSLDDHGHGGDA 344
           + DP  L    S++W  +     K KEV  E       ++K  W KR      +  GG  
Sbjct: 238 E-DPSGL--PRSSFWGSNAFLRAKSKEVPRENV-----NEKVNWMKR------NEEGGQV 283

Query: 345 YLFARANGSNSNSQTGLLNNVM 410
                   +N +S  GLL++ M
Sbjct: 284 SSNIFPPRTNQSSLPGLLSSSM 305


>ref|XP_002277074.1| PREDICTED: transcription factor TCP13 [Vitis vinifera]
          Length = 349

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
 Frame = +3

Query: 3   LNAAKHEIDQLPPLQMPPGNLAQN--PMLMRAFDNNNNTDSDHKSQGQFKLINSGGIINW 176
           LNAAKHEID+LPPLQMPPGN  Q+  PM+      +    +   ++ + K+ N    I+W
Sbjct: 98  LNAAKHEIDELPPLQMPPGNFVQSHQPMI-----TSLEVGASQFNKEELKISNG---IDW 149

Query: 177 DNDPLELSTTTSNYWRDH----MKCKEVVGEEALAIHDDDKETWTKRMSSLDDHGHGGDA 344
           + DP  L    S++W  +     K KEV  E       ++K  W KR      +  GG  
Sbjct: 150 E-DPSGL--PRSSFWGSNAFLRAKSKEVPRENV-----NEKVNWMKR------NEEGGQV 195

Query: 345 YLFARANGSNSNSQTGLLNNVM 410
                   +N +S  GLL++ M
Sbjct: 196 SSNIFPPRTNQSSLPGLLSSSM 217


>emb|CAN79810.1| hypothetical protein VITISV_014914 [Vitis vinifera]
          Length = 353

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
 Frame = +3

Query: 3   LNAAKHEIDQLPPLQMPPGNLAQN--PMLMRAFDNNNNTDSDHKSQGQFKLINSGGIINW 176
           LNAAKHEID+LPPLQMPPGN  Q+  PM+      +    +   ++ + K+ N    I+W
Sbjct: 98  LNAAKHEIDELPPLQMPPGNFVQSHQPMI-----TSLEVGASQFNKEELKISNG---IDW 149

Query: 177 DNDPLELSTTTSNYWRDH----MKCKEVVGEEALAIHDDDKETWTKRMSSLDDHGHGGDA 344
           + DP  L    S++W  +     K KEV  E       ++K  W KR      +  GG  
Sbjct: 150 E-DPSGL--PRSSFWGSNAFLRAKSKEVPRENV-----NEKVNWMKR------NEEGGQV 195

Query: 345 YLFARANGSNSNSQTGLLNNVM 410
                   +N +S  GLL++ M
Sbjct: 196 SSNIFPPRTNQSSLPGLLSSSM 217


Top