BLASTX nr result

ID: Panax21_contig00037441 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00037441
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319537.1| predicted protein [Populus trichocarpa] gi|2...   127   7e-28
ref|XP_002512380.1| pentatricopeptide repeat-containing protein,...   120   1e-25
ref|XP_003626291.1| Chaperone protein dnaJ [Medicago truncatula]...   118   4e-25
ref|NP_001154591.1| DnaJ domain-containing protein [Arabidopsis ...   118   6e-25
emb|CAN60541.1| hypothetical protein VITISV_018290 [Vitis vinifera]   117   7e-25

>ref|XP_002319537.1| predicted protein [Populus trichocarpa] gi|222857913|gb|EEE95460.1|
           predicted protein [Populus trichocarpa]
          Length = 266

 Score =  127 bits (320), Expect = 7e-28
 Identities = 67/106 (63%), Positives = 82/106 (77%), Gaps = 5/106 (4%)
 Frame = +1

Query: 55  PTQKIPFN-FPSFSSITSKFKVNCNG----NEALSTSSAYSVLGVSPNCSLIDLKAAFRA 219
           P++ IP   FPS S+ +SKFK +C G    +  LSTSSAY+VLG+ P CS   +KAAFRA
Sbjct: 30  PSKTIPIRLFPSLST-SSKFKPHCLGRAEEDSPLSTSSAYTVLGIKPGCSAAAIKAAFRA 88

Query: 220 KVKEFHPDARRDGEDSDTMIRRVIQAYEILSNYSKPEIIESECLDP 357
           KVK+FHPD  +DG+ SD MIRRVIQAYE+LSN+S+PEIIE ECLDP
Sbjct: 89  KVKQFHPDLNKDGKVSDLMIRRVIQAYEMLSNFSRPEIIERECLDP 134


>ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548341|gb|EEF49832.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 736

 Score =  120 bits (301), Expect = 1e-25
 Identities = 65/101 (64%), Positives = 77/101 (76%), Gaps = 5/101 (4%)
 Frame = +1

Query: 70  PFNFPSFSSITSKFKVNCN---GNEA--LSTSSAYSVLGVSPNCSLIDLKAAFRAKVKEF 234
           P  FPS S+  SKF VNC+   G++    S+S+A+ VLGV P CS  +LKAAFRAKVK+F
Sbjct: 506 PLRFPSHSN--SKFTVNCSERIGDDTPLSSSSAAHMVLGVDPGCSAAELKAAFRAKVKQF 563

Query: 235 HPDARRDGEDSDTMIRRVIQAYEILSNYSKPEIIESECLDP 357
           HPD  RD +  DTMIRRVIQAYEILSN+S+ EIIESECLDP
Sbjct: 564 HPDVNRDRKFPDTMIRRVIQAYEILSNFSRSEIIESECLDP 604


>ref|XP_003626291.1| Chaperone protein dnaJ [Medicago truncatula]
           gi|355501306|gb|AES82509.1| Chaperone protein dnaJ
           [Medicago truncatula]
          Length = 251

 Score =  118 bits (296), Expect = 4e-25
 Identities = 63/113 (55%), Positives = 82/113 (72%), Gaps = 6/113 (5%)
 Frame = +1

Query: 37  FPWSISPTQKIPFN--FPSFSSITSKFKVNCNGNE--ALSTSSAYSVLGVSPNCSLIDLK 204
           F ++++ T  +  N  FP   S+ +K + NC G E   LSTSSAY+VLGV P+CS  ++K
Sbjct: 7   FNFNLTTTTSMFVNRTFPLSVSLKNKTRTNCRGREDGPLSTSSAYAVLGVQPDCSAAEIK 66

Query: 205 AAFRAKVKEFHPDARRDGED--SDTMIRRVIQAYEILSNYSKPEIIESECLDP 357
           AAFR+KVK+FHPD  RD  +  SD MIRRVIQAY+ILSNY+  +IIE+ECLDP
Sbjct: 67  AAFRSKVKQFHPDLNRDENETYSDVMIRRVIQAYQILSNYTPSQIIETECLDP 119


>ref|NP_001154591.1| DnaJ domain-containing protein [Arabidopsis thaliana]
           gi|332640701|gb|AEE74222.1| DnaJ domain-containing
           protein [Arabidopsis thaliana]
          Length = 244

 Score =  118 bits (295), Expect = 6e-25
 Identities = 59/101 (58%), Positives = 75/101 (74%), Gaps = 3/101 (2%)
 Frame = +1

Query: 64  KIPFNFPSFSSITSKFKVNCNGN---EALSTSSAYSVLGVSPNCSLIDLKAAFRAKVKEF 234
           KI F   S  S + +F  +C G    + LS+SS YS+LGV P+CS  +LKAAFRAKVK++
Sbjct: 12  KISFFSNSRYSTSQRFIPSCRGKNREDPLSSSSPYSILGVEPSCSSSELKAAFRAKVKQY 71

Query: 235 HPDARRDGEDSDTMIRRVIQAYEILSNYSKPEIIESECLDP 357
           HPD  +DG +SD MIRR+IQAYE+L+NYS+ EIIE ECLDP
Sbjct: 72  HPDVNKDGSNSDIMIRRIIQAYEMLTNYSRSEIIEGECLDP 112


>emb|CAN60541.1| hypothetical protein VITISV_018290 [Vitis vinifera]
          Length = 322

 Score =  117 bits (294), Expect = 7e-25
 Identities = 69/116 (59%), Positives = 79/116 (68%), Gaps = 12/116 (10%)
 Frame = +1

Query: 46  SISPTQKIPFNFPSF--------SSITSKFKVNCN---GNEA-LSTSSAYSVLGVSPNCS 189
           S S T    FNFP+         SS TS+F VNC    G E  LS SSAY+VLGV P+CS
Sbjct: 17  SKSVTNLNGFNFPATFKTSLSFSSSSTSRFTVNCRDRTGEEPKLSDSSAYAVLGVDPSCS 76

Query: 190 LIDLKAAFRAKVKEFHPDARRDGEDSDTMIRRVIQAYEILSNYSKPEIIESECLDP 357
             +LKAAFRAKVK+FHPD  ++G DSD MIR VIQAYE+LS  S+ EIIE ECLDP
Sbjct: 77  AAELKAAFRAKVKQFHPDVNKEGGDSDKMIRLVIQAYELLSCCSRSEIIERECLDP 132


Top