BLASTX nr result

ID: Panax21_contig00037196 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00037196
         (373 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327543.1| nucleosome/chromatin assembly factor group [...    61   8e-08
ref|XP_002330494.1| nucleosome/chromatin assembly factor group [...    59   3e-07
ref|XP_003546968.1| PREDICTED: WD-40 repeat-containing protein M...    59   4e-07
ref|XP_003543596.1| PREDICTED: WD-40 repeat-containing protein M...    59   4e-07
ref|XP_002282044.2| PREDICTED: WD-40 repeat-containing protein M...    59   5e-07

>ref|XP_002327543.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]
           gi|222836097|gb|EEE74518.1| nucleosome/chromatin
           assembly factor group [Populus trichocarpa]
          Length = 465

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 28/45 (62%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
 Frame = -3

Query: 371 VFGSSAEDSALNLWDHKMIGQKQDHPRAK--PLPPGLFFRHSGHR 243
           VFG+SAED  LN+WD++ IG+KQD    K    PPGLFFRH+GHR
Sbjct: 356 VFGTSAEDGILNIWDYEKIGKKQDSTGLKVPTAPPGLFFRHAGHR 400


>ref|XP_002330494.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]
           gi|222872428|gb|EEF09559.1| nucleosome/chromatin
           assembly factor group [Populus trichocarpa]
          Length = 467

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 26/44 (59%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
 Frame = -3

Query: 371 VFGSSAEDSALNLWDHKMIGQKQDHP-RAKPLPPGLFFRHSGHR 243
           VFGSSAED  LN+WD++ +G+K + P RA   P GLFF+H+GHR
Sbjct: 358 VFGSSAEDGLLNIWDYEKVGKKTERPTRAPSSPAGLFFQHAGHR 401


>ref|XP_003546968.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Glycine max]
          Length = 367

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
 Frame = -3

Query: 371 VFGSSAEDSALNLWDHKMIGQKQD--HPRAKPLPPGLFFRHSGHR 243
           VFGS+AED  LN+WDH  +G+  D    +A   PPGLFFRH+GHR
Sbjct: 259 VFGSTAEDGILNIWDHDKVGKTTDSASSKASNTPPGLFFRHAGHR 303


>ref|XP_003543596.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Glycine max]
          Length = 453

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
 Frame = -3

Query: 371 VFGSSAEDSALNLWDHKMIGQKQD--HPRAKPLPPGLFFRHSGHR 243
           VFGS+AED  LN+WDH  +G+  D    +A   PPGLFFRH+GHR
Sbjct: 345 VFGSTAEDGILNIWDHDKVGKTTDSADSKASNAPPGLFFRHAGHR 389


>ref|XP_002282044.2| PREDICTED: WD-40 repeat-containing protein MSI4 [Vitis vinifera]
          Length = 508

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
 Frame = -3

Query: 371 VFGSSAEDSALNLWDHKMIGQKQD-HPRAKPLPPGLFFRHSGHR 243
           VFGSSAED  LN+WDH+++G+K++  PR      GLFF+H+GHR
Sbjct: 399 VFGSSAEDGLLNIWDHQLVGKKKEGGPRTPTSASGLFFKHAGHR 442


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