BLASTX nr result

ID: Panax21_contig00037154 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00037154
         (859 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding prote...   153   4e-35
emb|CBI21312.3| unnamed protein product [Vitis vinifera]              153   4e-35
emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]   153   4e-35
ref|XP_002512890.1| double-stranded RNA binding protein, putativ...   115   1e-23
ref|XP_002328932.1| predicted protein [Populus trichocarpa] gi|2...    92   2e-16

>ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
          Length = 484

 Score =  153 bits (387), Expect = 4e-35
 Identities = 122/318 (38%), Positives = 148/318 (46%), Gaps = 33/318 (10%)
 Frame = +1

Query: 1    NFKGELAKTKKQAEKNAAIAAWSSLKRMPNLVSLSQTGKITSKGEELDQTNMAKVLSNSG 180
            NF GE AKTKKQAEKNAAIAAWS+LKR+PNL SLS   K     EE  Q  +A+VLSN  
Sbjct: 132  NFTGESAKTKKQAEKNAAIAAWSALKRVPNLGSLSHLSKEAESREE--QVVVARVLSNFR 189

Query: 181  PKDESRTIXXXXXXXXXXXXMQGSLTHTDTEGSSNSXXXXXXXXXXXXXXSAPLESLTPN 360
             KDESR I            ++G      +  S+NS              S P      N
Sbjct: 190  SKDESRPIRRWDQNQARRRMVRGHGGSGSSSTSNNSQQFQKWRPMDLLMDSVPEGGTAQN 249

Query: 361  KSSFVXXXXXXXXXXXXXXXXQKSSK---SLYP--------------------------Y 453
            ++ FV                  S +   SLYP                          +
Sbjct: 250  QNCFVALLPPPPPRTASKILPPISPRDTLSLYPSTRPIPVQAIGRSQVKMPEVPTLLEEH 309

Query: 454  PLDENEWLNGKSEPIKPPIETEGKGPNKSTSSLFHGENPPMYGRPFSLSNTGKLKSLVQP 633
              DE EWL+GKS  I+ P  TE + P+ + +S  +G N  +Y RPF L N GKL + +  
Sbjct: 310  QRDEEEWLDGKSNLIRKP--TEKECPSNANASSVYGAN-SIY-RPFPLPNAGKLNTSLPD 365

Query: 634  DHRTQSEQTHMGKRVLGATTQSQMGRSMIMH--NTGGSGYYYPQRIAPAVQIRSVIPVYA 807
                  EQTH+     G  T S M  S  +H   T G+G + P RIAPAVQIRSVIPV A
Sbjct: 366  SPHQPHEQTHIKNNPFGNPTPSAMKGSAGIHIPRTMGTGGFQPHRIAPAVQIRSVIPVCA 425

Query: 808  APAASMR--PSNPPLLKE 855
            AP   MR  PSN P   E
Sbjct: 426  APPPPMRLPPSNHPTRNE 443


>emb|CBI21312.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  153 bits (387), Expect = 4e-35
 Identities = 122/318 (38%), Positives = 148/318 (46%), Gaps = 33/318 (10%)
 Frame = +1

Query: 1    NFKGELAKTKKQAEKNAAIAAWSSLKRMPNLVSLSQTGKITSKGEELDQTNMAKVLSNSG 180
            NF GE AKTKKQAEKNAAIAAWS+LKR+PNL SLS   K     EE  Q  +A+VLSN  
Sbjct: 129  NFTGESAKTKKQAEKNAAIAAWSALKRVPNLGSLSHLSKEAESREE--QVVVARVLSNFR 186

Query: 181  PKDESRTIXXXXXXXXXXXXMQGSLTHTDTEGSSNSXXXXXXXXXXXXXXSAPLESLTPN 360
             KDESR I            ++G      +  S+NS              S P      N
Sbjct: 187  SKDESRPIRRWDQNQARRRMVRGHGGSGSSSTSNNSQQFQKWRPMDLLMDSVPEGGTAQN 246

Query: 361  KSSFVXXXXXXXXXXXXXXXXQKSSK---SLYP--------------------------Y 453
            ++ FV                  S +   SLYP                          +
Sbjct: 247  QNCFVALLPPPPPRTASKILPPISPRDTLSLYPSTRPIPVQAIGRSQVKMPEVPTLLEEH 306

Query: 454  PLDENEWLNGKSEPIKPPIETEGKGPNKSTSSLFHGENPPMYGRPFSLSNTGKLKSLVQP 633
              DE EWL+GKS  I+ P  TE + P+ + +S  +G N  +Y RPF L N GKL + +  
Sbjct: 307  QRDEEEWLDGKSNLIRKP--TEKECPSNANASSVYGAN-SIY-RPFPLPNAGKLNTSLPD 362

Query: 634  DHRTQSEQTHMGKRVLGATTQSQMGRSMIMH--NTGGSGYYYPQRIAPAVQIRSVIPVYA 807
                  EQTH+     G  T S M  S  +H   T G+G + P RIAPAVQIRSVIPV A
Sbjct: 363  SPHQPHEQTHIKNNPFGNPTPSAMKGSAGIHIPRTMGTGGFQPHRIAPAVQIRSVIPVCA 422

Query: 808  APAASMR--PSNPPLLKE 855
            AP   MR  PSN P   E
Sbjct: 423  APPPPMRLPPSNHPTRNE 440


>emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
          Length = 552

 Score =  153 bits (387), Expect = 4e-35
 Identities = 122/318 (38%), Positives = 148/318 (46%), Gaps = 33/318 (10%)
 Frame = +1

Query: 1    NFKGELAKTKKQAEKNAAIAAWSSLKRMPNLVSLSQTGKITSKGEELDQTNMAKVLSNSG 180
            NF GE AKTKKQAEKNAAIAAWS+LKR+PNL SLS   K     EE  Q  +A+VLSN  
Sbjct: 200  NFTGESAKTKKQAEKNAAIAAWSALKRVPNLGSLSHLSKEAESREE--QVVVARVLSNFR 257

Query: 181  PKDESRTIXXXXXXXXXXXXMQGSLTHTDTEGSSNSXXXXXXXXXXXXXXSAPLESLTPN 360
             KDESR I            ++G      +  S+NS              S P      N
Sbjct: 258  SKDESRPIRRWDQNQARRRMVRGHGGSGSSSTSNNSQQFQKWRPMDLLMDSVPEGGTAQN 317

Query: 361  KSSFVXXXXXXXXXXXXXXXXQKSSK---SLYP--------------------------Y 453
            ++ FV                  S +   SLYP                          +
Sbjct: 318  QNCFVALLPPPPPRTASKILPPISPRDTLSLYPSTRPIPVQAIGRSQVKMPEVPTLLEEH 377

Query: 454  PLDENEWLNGKSEPIKPPIETEGKGPNKSTSSLFHGENPPMYGRPFSLSNTGKLKSLVQP 633
              DE EWL+GKS  I+ P  TE + P+ + +S  +G N  +Y RPF L N GKL + +  
Sbjct: 378  QRDEEEWLDGKSNLIRKP--TEKECPSNANASSVYGAN-SIY-RPFPLPNAGKLNTSLPD 433

Query: 634  DHRTQSEQTHMGKRVLGATTQSQMGRSMIMH--NTGGSGYYYPQRIAPAVQIRSVIPVYA 807
                  EQTH+     G  T S M  S  +H   T G+G + P RIAPAVQIRSVIPV A
Sbjct: 434  SPHQPHEQTHIKNNPFGNPTPSAMKGSAGIHIPRTMGTGGFQPHRIAPAVQIRSVIPVCA 493

Query: 808  APAASMR--PSNPPLLKE 855
            AP   MR  PSN P   E
Sbjct: 494  APPPPMRLPPSNHPTRNE 511


>ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
           gi|223547901|gb|EEF49393.1| double-stranded RNA binding
           protein, putative [Ricinus communis]
          Length = 477

 Score =  115 bits (289), Expect = 1e-23
 Identities = 103/296 (34%), Positives = 139/296 (46%), Gaps = 15/296 (5%)
 Frame = +1

Query: 1   NFKGELAKTKKQAEKNAAIAAWSSLKRMPNLVSLSQTGKITSKGEELDQTNMAKVLSNSG 180
           NF GE AKTKKQAEKNAAIAAWS+LKRMP+L  L+    + S+ EE DQ  +A+VLSN  
Sbjct: 132 NFTGEPAKTKKQAEKNAAIAAWSALKRMPSLDYLTNKEVVESR-EEQDQAVVARVLSNFR 190

Query: 181 PKDE-SRTIXXXXXXXXXXXXMQG-----SLTHTDTEGSSNSXXXXXXXXXXXXXXSAPL 342
            KDE ++              ++G     S + + +  SSNS              SA L
Sbjct: 191 SKDEYNKQARKKDCSQARRRLVKGYRDYSSASSSSSSTSSNSLHYQHRKLLDLLLDSA-L 249

Query: 343 ESLTPNKSSFVXXXXXXXXXXXXXXXXQKSSKSLYPYPLDENEWLNGKSEPIKPPIETEG 522
           +S T  +SSFV                + +SK L P    +N +    S      I+ +G
Sbjct: 250 DSSTQKQSSFV--------SLLPPPPPRTTSKILPPTSPIDNPYSYPSSRCNPHQIQVKG 301

Query: 523 KGPNKSTSSLFHGEN--PPMYGRPF---SLSNTGKLKSLVQPDHRTQSEQTHMGKRVLGA 687
           K   K        E   P    +     S S++    S +      Q   +H+G R+ G 
Sbjct: 302 KQQTKEIEEHQKDEEEWPGAIKKSIEKESSSSSVYGSSSLYRQFPHQESTSHIGNRIFGP 361

Query: 688 TTQSQMGRSMIMHNTGGSGYY----YPQRIAPAVQIRSVIPVYAAPAASMRPSNPP 843
           ++ S       +H    S +Y    YP RIAPAVQIRSVIPV AAP A++RP+  P
Sbjct: 362 SSTSIKSTPSSIHMCSNSPFYSGMLYPHRIAPAVQIRSVIPVCAAPPAAVRPAPAP 417


>ref|XP_002328932.1| predicted protein [Populus trichocarpa] gi|222839362|gb|EEE77699.1|
           predicted protein [Populus trichocarpa]
          Length = 234

 Score = 91.7 bits (226), Expect = 2e-16
 Identities = 62/137 (45%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
 Frame = +1

Query: 460 DENEWLNGKSEPIKPPIETEGKGPNKSTSSLFHGENPPMYGRPFSLSNTGK-LKSLVQPD 636
           DE EWL  KS+ IK PIE EG   N + SSL+   +  +Y RPF  SNTGK + SL+  D
Sbjct: 59  DEEEWLGTKSDVIKKPIEKEGTS-NSNPSSLYASSS--IY-RPFPFSNTGKPVTSLL--D 112

Query: 637 HRTQSEQTHMGKRVLGATTQSQMGRSMIMHNTGGS--------GYYYPQRIAPAVQIRSV 792
           + +Q E TH+  R+ G+   S M  + I H    +        G + P RIAPAVQIRSV
Sbjct: 113 NTSQHESTHISSRIFGSPNPSPMASTSI-HTPSNTHIPRPMFTGGFNPHRIAPAVQIRSV 171

Query: 793 IPVYAAPAASMRPSNPP 843
           IPV AAP + +RP   P
Sbjct: 172 IPVCAAPPSPIRPPQSP 188


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