BLASTX nr result

ID: Panax21_contig00037011 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00037011
         (581 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24131.3| unnamed protein product [Vitis vinifera]              233   2e-59
ref|XP_002265699.1| PREDICTED: general transcription factor 3C p...   233   2e-59
ref|XP_002330644.1| predicted protein [Populus trichocarpa] gi|2...   184   9e-45
ref|XP_003607233.1| Transcription factor tau subunit sfc4 [Medic...   179   4e-43
ref|XP_003607226.1| Transcription factor tau subunit sfc4 [Medic...   179   4e-43

>emb|CBI24131.3| unnamed protein product [Vitis vinifera]
          Length = 915

 Score =  233 bits (594), Expect = 2e-59
 Identities = 111/174 (63%), Positives = 136/174 (78%)
 Frame = +2

Query: 59  NRVTPEITRMLGEGTIHYASGRYEEAINVLNEVIRLAPNLVDTYHTLGLVYGEVGEKQKS 238
           N+++PE+TR LGE  +HYA GRYEEAI VL EV+RLAPNL D YHT GLVY   G+K+++
Sbjct: 87  NKLSPEVTRKLGEANLHYAHGRYEEAILVLKEVVRLAPNLPDAYHTFGLVYNAFGDKKRA 146

Query: 239 MSFYMLAAVMKPKDXXXXXXXXXXXXEQGNTSQARYCLCKAIMADPEDIELRFHRASLYI 418
           ++FYMLAA + PKD            EQGNT QARYCL KAI ADPEDI LRFHRASLY+
Sbjct: 147 LNFYMLAAHLTPKDSSLWKLLVTWSIEQGNTGQARYCLSKAITADPEDISLRFHRASLYV 206

Query: 419 ELGNHEKAAKSYDEISQLWPDNVEAHKTAAKLYQACGKVQRSIDILESYIKHQP 580
           ELG ++KAA+SY++ISQL+P+NVEA KT AKLY+ CG+V+RS+ ILE YIK  P
Sbjct: 207 ELGEYQKAAESYEQISQLFPENVEAPKTGAKLYKKCGQVERSVSILEDYIKDHP 260


>ref|XP_002265699.1| PREDICTED: general transcription factor 3C polypeptide 3-like
           [Vitis vinifera]
          Length = 1110

 Score =  233 bits (594), Expect = 2e-59
 Identities = 111/174 (63%), Positives = 136/174 (78%)
 Frame = +2

Query: 59  NRVTPEITRMLGEGTIHYASGRYEEAINVLNEVIRLAPNLVDTYHTLGLVYGEVGEKQKS 238
           N+++PE+TR LGE  +HYA GRYEEAI VL EV+RLAPNL D YHT GLVY   G+K+++
Sbjct: 127 NKLSPEVTRKLGEANLHYAHGRYEEAILVLKEVVRLAPNLPDAYHTFGLVYNAFGDKKRA 186

Query: 239 MSFYMLAAVMKPKDXXXXXXXXXXXXEQGNTSQARYCLCKAIMADPEDIELRFHRASLYI 418
           ++FYMLAA + PKD            EQGNT QARYCL KAI ADPEDI LRFHRASLY+
Sbjct: 187 LNFYMLAAHLTPKDSSLWKLLVTWSIEQGNTGQARYCLSKAITADPEDISLRFHRASLYV 246

Query: 419 ELGNHEKAAKSYDEISQLWPDNVEAHKTAAKLYQACGKVQRSIDILESYIKHQP 580
           ELG ++KAA+SY++ISQL+P+NVEA KT AKLY+ CG+V+RS+ ILE YIK  P
Sbjct: 247 ELGEYQKAAESYEQISQLFPENVEAPKTGAKLYKKCGQVERSVSILEDYIKDHP 300


>ref|XP_002330644.1| predicted protein [Populus trichocarpa] gi|222872248|gb|EEF09379.1|
           predicted protein [Populus trichocarpa]
          Length = 686

 Score =  184 bits (467), Expect = 9e-45
 Identities = 87/174 (50%), Positives = 126/174 (72%)
 Frame = +2

Query: 59  NRVTPEITRMLGEGTIHYASGRYEEAINVLNEVIRLAPNLVDTYHTLGLVYGEVGEKQKS 238
           N+++PEITRMLG+ T+HYA G YEEA+ VL+EV++ AP + D+YHTLGLV+  +G  +K+
Sbjct: 137 NKLSPEITRMLGDATLHYAHGNYEEALTVLSEVVKRAPLVADSYHTLGLVHKALGNTEKA 196

Query: 239 MSFYMLAAVMKPKDXXXXXXXXXXXXEQGNTSQARYCLCKAIMADPEDIELRFHRASLYI 418
           M FY +AA ++PKD            EQG+ ++A  CL KAI ADP+DI LR   A  Y 
Sbjct: 197 MKFYRIAAFLRPKDSSLWKLLFSWHVEQGDIARAWKCLSKAISADPDDISLRSLHALFYD 256

Query: 419 ELGNHEKAAKSYDEISQLWPDNVEAHKTAAKLYQACGKVQRSIDILESYIKHQP 580
           ELG+H++AA+SY++I ++ P++VEA KTAAK++  CG+++R + ILE Y+K  P
Sbjct: 257 ELGDHQRAAESYEQIVRICPEDVEAIKTAAKMHLNCGQIKRCVGILEDYLKGHP 310


>ref|XP_003607233.1| Transcription factor tau subunit sfc4 [Medicago truncatula]
           gi|355508288|gb|AES89430.1| Transcription factor tau
           subunit sfc4 [Medicago truncatula]
          Length = 958

 Score =  179 bits (453), Expect = 4e-43
 Identities = 85/173 (49%), Positives = 123/173 (71%)
 Frame = +2

Query: 62  RVTPEITRMLGEGTIHYASGRYEEAINVLNEVIRLAPNLVDTYHTLGLVYGEVGEKQKSM 241
           ++  +I++MLG+  +HYA+GR++ AI+VL+EV+RL PNL D+YHTLGLV+G +G+ +  M
Sbjct: 162 KLDEKISQMLGDAHVHYANGRHKMAISVLHEVVRLEPNLPDSYHTLGLVHGAIGDHENEM 221

Query: 242 SFYMLAAVMKPKDXXXXXXXXXXXXEQGNTSQARYCLCKAIMADPEDIELRFHRASLYIE 421
            FYM+ A + PKD             Q +  QA YC+ KAI ADP+D  LR H+A LY E
Sbjct: 222 GFYMITAHLTPKDPTLWKTLYVWSIGQDDIGQASYCISKAIKADPQDSSLRSHQAMLYAE 281

Query: 422 LGNHEKAAKSYDEISQLWPDNVEAHKTAAKLYQACGKVQRSIDILESYIKHQP 580
             N++KAA++Y+++ QL  +NV+A K AAK YQ CG+V+RSI ILE Y+K++P
Sbjct: 282 SQNYQKAAEAYEQVYQLCRENVDALKAAAKYYQKCGQVERSICILEDYLKNKP 334


>ref|XP_003607226.1| Transcription factor tau subunit sfc4 [Medicago truncatula]
           gi|355508281|gb|AES89423.1| Transcription factor tau
           subunit sfc4 [Medicago truncatula]
          Length = 469

 Score =  179 bits (453), Expect = 4e-43
 Identities = 85/173 (49%), Positives = 123/173 (71%)
 Frame = +2

Query: 62  RVTPEITRMLGEGTIHYASGRYEEAINVLNEVIRLAPNLVDTYHTLGLVYGEVGEKQKSM 241
           ++  +I++MLG+  +HYA+GR++ AI+VL+EV+RL PNL D+YHTLGLV+G +G+ +  M
Sbjct: 162 KLDEKISQMLGDAHVHYANGRHKMAISVLHEVVRLEPNLPDSYHTLGLVHGAIGDHENEM 221

Query: 242 SFYMLAAVMKPKDXXXXXXXXXXXXEQGNTSQARYCLCKAIMADPEDIELRFHRASLYIE 421
            FYM+ A + PKD             Q +  QA YC+ KAI ADP+D  LR H+A LY E
Sbjct: 222 GFYMITAHLTPKDPTLWKTLYVWSIGQDDIGQASYCISKAIKADPQDSSLRSHQAMLYAE 281

Query: 422 LGNHEKAAKSYDEISQLWPDNVEAHKTAAKLYQACGKVQRSIDILESYIKHQP 580
             N++KAA++Y+++ QL  +NV+A K AAK YQ CG+V+RSI ILE Y+K++P
Sbjct: 282 SQNYQKAAEAYEQVYQLCRENVDALKAAAKYYQKCGQVERSICILEDYLKNKP 334


Top