BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00036704
         (547 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   199   2e-49
gb|ABA95366.1| retrotransposon protein, putative, Ty1-copia subc...   198   4e-49
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   195   3e-48
gb|ABF97142.1| retrotransposon protein, putative, Ty1-copia subc...   195   4e-48
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   195   4e-48

>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  199 bits (507), Expect = 2e-49
 Identities = 104/185 (56%), Positives = 128/185 (69%), Gaps = 3/185 (1%)
 Frame = -1

Query: 547  LITRAKMAECKPVKTPAAVQHHKPPSASLYSTP---TFFRQIVVALQYTTLTRPDLSFAV 377
            L+ R  M  CKPV TP A       SA    +P   T +R +V ALQY TLTRPDLS+A+
Sbjct: 1177 LLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAI 1236

Query: 376  NKVCQSMHNPTEENWVAVKRIIRYLQHTINFGLSISKSDNPFTLQAFCDSDWAGNFIDRK 197
            N+VCQ +H PT+ +W AVKRI+R +QHTI  GL+I  S +   L AF D+DWAG   DRK
Sbjct: 1237 NRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLS-LMLSAFSDADWAGCPDDRK 1295

Query: 196  STAGYAIFMGNNLVSWASRKQRTVARSSTEAEYKSLADTAAEITWLQSLFSELGIFLKEP 17
            ST GYA+F+G NL+SW S+KQ TV+RSSTEAEYK++A+  AE+ WLQSL  ELGI L   
Sbjct: 1296 STGGYALFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGI 1355

Query: 16   PILWC 2
            P LWC
Sbjct: 1356 PRLWC 1360


>gb|ABA95366.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 552

 Score =  198 bits (504), Expect = 4e-49
 Identities = 100/186 (53%), Positives = 130/186 (69%), Gaps = 4/186 (2%)
 Frame = -1

Query: 547 LITRAKMAECKPVKTPAAVQH----HKPPSASLYSTPTFFRQIVVALQYTTLTRPDLSFA 380
           ++ R  M +CKPV TP         H+        T T +R IV AL Y TLTRPD+SF+
Sbjct: 295 ILRRVGMQDCKPVSTPLLASEKLLVHEGTLLGQKDT-TQYRSIVGALPYLTLTRPDISFS 353

Query: 379 VNKVCQSMHNPTEENWVAVKRIIRYLQHTINFGLSISKSDNPFTLQAFCDSDWAGNFIDR 200
           VNKVCQ +H+PT  +W  VKRI+RYL++T+N GL ISKS +   +  FCD+DWAG   DR
Sbjct: 354 VNKVCQFLHSPTTVHWTVVKRILRYLKYTVNCGLRISKSSS-LLVSGFCDADWAGCLDDR 412

Query: 199 KSTAGYAIFMGNNLVSWASRKQRTVARSSTEAEYKSLADTAAEITWLQSLFSELGIFLKE 20
           +ST G+A+F+G+NLVSW++RKQ TV+RSSTEAEYK+LADT AEI WLQ+L  E+GI   +
Sbjct: 413 RSTGGFAVFLGSNLVSWSARKQTTVSRSSTEAEYKALADTKAEIMWLQTLLYEIGIETPK 472

Query: 19  PPILWC 2
              +WC
Sbjct: 473 AAKVWC 478


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  195 bits (496), Expect = 3e-48
 Identities = 100/187 (53%), Positives = 131/187 (70%), Gaps = 5/187 (2%)
 Frame = -1

Query: 547  LITRAKMAECKPVKTPAAVQ-----HHKPPSASLYSTPTFFRQIVVALQYTTLTRPDLSF 383
            ++ R  M++CK V TP ++      H   P     ST   +R +V ALQY TLTRPDLSF
Sbjct: 774  VLKRVNMSDCKAVNTPLSISEKLSAHEGNPLGPEDSTR--YRSLVGALQYLTLTRPDLSF 831

Query: 382  AVNKVCQSMHNPTEENWVAVKRIIRYLQHTINFGLSISKSDNPFTLQAFCDSDWAGNFID 203
            +VNKVCQ +H  T ++WVA KRI+RYL+HT+  GL ISKS N   + AF D+DWAG   D
Sbjct: 832  SVNKVCQYLHAATTKHWVAAKRILRYLKHTVKLGLKISKS-NSLLVSAFSDADWAGCLDD 890

Query: 202  RKSTAGYAIFMGNNLVSWASRKQRTVARSSTEAEYKSLADTAAEITWLQSLFSELGIFLK 23
            R+ST G+A+F+G NLVSW++RKQ TV+RSSTEAEYK+LA+  AEI W+Q+L  ELGI + 
Sbjct: 891  RRSTGGFAVFIGPNLVSWSARKQATVSRSSTEAEYKALANATAEIMWIQTLLHELGIQVP 950

Query: 22   EPPILWC 2
            +   +WC
Sbjct: 951  KIAKVWC 957


>gb|ABF97142.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 658

 Score =  195 bits (495), Expect = 4e-48
 Identities = 96/185 (51%), Positives = 127/185 (68%), Gaps = 3/185 (1%)
 Frame = -1

Query: 547 LITRAKMAECKPVKTPAAVQHHKPPSASLYSTP---TFFRQIVVALQYTTLTRPDLSFAV 377
           ++ R  M++CK V TP ++             P   T++R +V AL Y TLTRPDLSF+V
Sbjct: 62  VLKRVNMSDCKAVNTPLSISEKLSAYEGTPLGPVDSTWYRSLVGALHYLTLTRPDLSFSV 121

Query: 376 NKVCQSMHNPTEENWVAVKRIIRYLQHTINFGLSISKSDNPFTLQAFCDSDWAGNFIDRK 197
           NKVCQ +H PT E+W A KRI+RYL+HT+  GL I KS N   + AF D+DWAG   DR+
Sbjct: 122 NKVCQYLHAPTTEHWAAAKRILRYLKHTVKLGLKIGKS-NSLLVSAFSDADWAGCLDDRR 180

Query: 196 STAGYAIFMGNNLVSWASRKQRTVARSSTEAEYKSLADTAAEITWLQSLFSELGIFLKEP 17
           ST G+A+F+G NLVSW++RKQ TV+RSSTEAEYK+L +  AEI W+Q+L  ELGI + + 
Sbjct: 181 STGGFAVFIGPNLVSWSARKQATVSRSSTEAEYKALENATAEIMWIQTLLHELGIQVPKT 240

Query: 16  PILWC 2
             +WC
Sbjct: 241 AKVWC 245


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  195 bits (495), Expect = 4e-48
 Identities = 100/187 (53%), Positives = 129/187 (68%), Gaps = 5/187 (2%)
 Frame = -1

Query: 547  LITRAKMAECKPVKTPAAVQ-----HHKPPSASLYSTPTFFRQIVVALQYTTLTRPDLSF 383
            ++ R  M++CK V TP ++      H   P     ST   +R +V ALQY TLTRPDLSF
Sbjct: 1174 VLKRVNMSDCKAVNTPLSISEKLSAHEGNPFGPEDSTR--YRSLVGALQYLTLTRPDLSF 1231

Query: 382  AVNKVCQSMHNPTEENWVAVKRIIRYLQHTINFGLSISKSDNPFTLQAFCDSDWAGNFID 203
            +VNKVCQ +H PT ++W A KRI+RYL+HT+  GL ISKS N   + AF D+DWAG   D
Sbjct: 1232 SVNKVCQYLHAPTTKHWAAAKRILRYLKHTVKLGLKISKS-NSLLVSAFSDADWAGCLDD 1290

Query: 202  RKSTAGYAIFMGNNLVSWASRKQRTVARSSTEAEYKSLADTAAEITWLQSLFSELGIFLK 23
            R ST G+A+F+G NLVSW++RKQ TV+RSSTEAEYK+LA+  AEI W+Q+L  ELGI   
Sbjct: 1291 RHSTGGFAVFIGPNLVSWSARKQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAP 1350

Query: 22   EPPILWC 2
            +   +WC
Sbjct: 1351 KIAKVWC 1357