BLASTX nr result

ID: Panax21_contig00036685 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00036685
         (785 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321027.1| predicted protein [Populus trichocarpa] gi|2...   313   3e-83
ref|XP_002520664.1| conserved hypothetical protein [Ricinus comm...   301   1e-79
ref|XP_002520663.1| conserved hypothetical protein [Ricinus comm...   300   3e-79
ref|XP_002871294.1| mitochondrial transcription termination fact...   280   3e-73
ref|NP_568185.1| Mitochondrial transcription termination factor ...   279   6e-73

>ref|XP_002321027.1| predicted protein [Populus trichocarpa] gi|222861800|gb|EEE99342.1|
           predicted protein [Populus trichocarpa]
          Length = 400

 Score =  313 bits (802), Expect = 3e-83
 Identities = 149/220 (67%), Positives = 178/220 (80%)
 Frame = +1

Query: 1   LKSNEKVVAATRRTTWIFLEDYTKNLEPNIVVLRGVGVPESCIILLLTHFPEAVMLKHDR 180
           L+S+EK+V+A +RTTWIFLED +KNL PN+ +LR VGVP+SCI LLLTHFPEA+M  H+ 
Sbjct: 176 LRSDEKIVSAFKRTTWIFLEDLSKNLIPNLELLRKVGVPQSCISLLLTHFPEAMMENHEE 235

Query: 181 FKETVAKVKGMGFDPMKSQFVLAVHVFSGEGNKSIWDRCCEVYKNWGWSEDDILMAFRKQ 360
           F E V +V+ MGFDP KS FVLAVH   G+ NKSIW+RC EVYK WGW++DDIL AFRK 
Sbjct: 236 FSENVEEVRKMGFDPNKSTFVLAVHALCGKCNKSIWERCFEVYKRWGWTKDDILSAFRKH 295

Query: 361 PNCMILSEKKITKAMDFLVNKMGWPSRVIASCPAVLLFSLEKRIIPRCYVIQALSVKDLI 540
           P+CM+LSEKKI K +DF VNKMGWPS+ I  CP +L  SLEKRIIPRC VIQ L  K LI
Sbjct: 296 PHCMMLSEKKIMKGLDFFVNKMGWPSKEIVHCPVILFLSLEKRIIPRCKVIQVLWSKGLI 355

Query: 541 KKDVSLLTVMIPAEKYFLERFVTKYEEELPQLWGVYQGEV 660
           KKD+SL TV++P EK FLERFVTK+EEE+PQL  VY+G+V
Sbjct: 356 KKDISLNTVLLPVEKRFLERFVTKFEEEVPQLLSVYEGKV 395


>ref|XP_002520664.1| conserved hypothetical protein [Ricinus communis]
           gi|223540049|gb|EEF41626.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 406

 Score =  301 bits (771), Expect = 1e-79
 Identities = 143/224 (63%), Positives = 180/224 (80%)
 Frame = +1

Query: 1   LKSNEKVVAATRRTTWIFLEDYTKNLEPNIVVLRGVGVPESCIILLLTHFPEAVMLKHDR 180
           L S+EK+V+A +RTTWIFLED++KNL PNI +LR  GV  SCI LLLTHFPEA+M +HD+
Sbjct: 177 LLSDEKIVSALKRTTWIFLEDHSKNLIPNIELLREAGVLHSCISLLLTHFPEALMQRHDK 236

Query: 181 FKETVAKVKGMGFDPMKSQFVLAVHVFSGEGNKSIWDRCCEVYKNWGWSEDDILMAFRKQ 360
           F + V +V+ M FDP KS FVLAVH  SG+GNKSIW++C EVY  WGWS+DDI  AF+K 
Sbjct: 237 FSKIVKEVREMEFDPKKSTFVLAVHAISGKGNKSIWNKCFEVYMRWGWSKDDIFAAFKKH 296

Query: 361 PNCMILSEKKITKAMDFLVNKMGWPSRVIASCPAVLLFSLEKRIIPRCYVIQALSVKDLI 540
           P+CM+LSEKKI KAMDF VNKMG+PS+VIA CP VL FSLEKRI+PRC VI+ L  K L+
Sbjct: 297 PHCMMLSEKKIMKAMDFFVNKMGFPSKVIAQCPVVLFFSLEKRIVPRCRVIRVLMNKRLV 356

Query: 541 KKDVSLLTVMIPAEKYFLERFVTKYEEELPQLWGVYQGEVHVSE 672
           K+DVSL +V++P E+ FL+RFVT++ EE+P+L  VY+G+  V E
Sbjct: 357 KEDVSLASVLLPVEQCFLDRFVTRFAEEIPRLLSVYEGKRDVEE 400


>ref|XP_002520663.1| conserved hypothetical protein [Ricinus communis]
           gi|223540048|gb|EEF41625.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 377

 Score =  300 bits (767), Expect = 3e-79
 Identities = 143/222 (64%), Positives = 175/222 (78%)
 Frame = +1

Query: 1   LKSNEKVVAATRRTTWIFLEDYTKNLEPNIVVLRGVGVPESCIILLLTHFPEAVMLKHDR 180
           L SNEK+V+A +RTTWIFLEDY+KNL PN+  LR +GV  SCI LLLT+FPEAV+ +H  
Sbjct: 152 LLSNEKIVSALKRTTWIFLEDYSKNLMPNVERLREIGVTHSCISLLLTNFPEAVLQRHGE 211

Query: 181 FKETVAKVKGMGFDPMKSQFVLAVHVFSGEGNKSIWDRCCEVYKNWGWSEDDILMAFRKQ 360
           F + V +VK MGFDP KS FV+AVH  SG+ NK+IW++C EVYK W WS+DDI  AF+K 
Sbjct: 212 FNKVVKEVKEMGFDPKKSIFVMAVHAISGKSNKAIWNKCFEVYKRWDWSKDDIFAAFKKH 271

Query: 361 PNCMILSEKKITKAMDFLVNKMGWPSRVIASCPAVLLFSLEKRIIPRCYVIQALSVKDLI 540
           P+CM+LSEKKI  AMDF VNKMG PS+VIA CP +L FSLEKRI+PRC VI+ L  K L+
Sbjct: 272 PHCMMLSEKKIMLAMDFFVNKMGLPSKVIAQCPVLLFFSLEKRIVPRCRVIRVLMNKGLV 331

Query: 541 KKDVSLLTVMIPAEKYFLERFVTKYEEELPQLWGVYQGEVHV 666
           KKDVSL TV++P EK FL+RFV KYEEE+P L  VY+G++ V
Sbjct: 332 KKDVSLATVLVPTEKCFLDRFVIKYEEEVPLLLRVYEGKIDV 373


>ref|XP_002871294.1| mitochondrial transcription termination factor family protein
           [Arabidopsis lyrata subsp. lyrata]
           gi|297317131|gb|EFH47553.1| mitochondrial transcription
           termination factor family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 404

 Score =  280 bits (715), Expect = 3e-73
 Identities = 133/218 (61%), Positives = 163/218 (74%)
 Frame = +1

Query: 1   LKSNEKVVAATRRTTWIFLEDYTKNLEPNIVVLRGVGVPESCIILLLTHFPEAVMLKHDR 180
           L S+EK+VAA RRTTW+FLED+TKNL PNI  +   GVPE CI LLLTHFPEAVM K   
Sbjct: 183 LDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMSETGVPEKCIKLLLTHFPEAVMQKSHE 242

Query: 181 FKETVAKVKGMGFDPMKSQFVLAVHVFSGEGNKSIWDRCCEVYKNWGWSEDDILMAFRKQ 360
           F+    + + MGF+P KS FVLA+H  SG+GNKSIWD+C EVY+ WGWSEDDI+ AF+K 
Sbjct: 243 FQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKH 302

Query: 361 PNCMILSEKKITKAMDFLVNKMGWPSRVIASCPAVLLFSLEKRIIPRCYVIQALSVKDLI 540
           P+CM+LSE+KI + M+F VN+M    R IA CP VL FSLEKRIIPRC V + L    L+
Sbjct: 303 PHCMMLSERKINRTMEFFVNEMNLAPRSIAECPVVLFFSLEKRIIPRCSVTKVLVSNGLV 362

Query: 541 KKDVSLLTVMIPAEKYFLERFVTKYEEELPQLWGVYQG 654
           K+D SL ++++P EK FLE+ V KYEEELP+L  VY G
Sbjct: 363 KEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMDVYLG 400


>ref|NP_568185.1| Mitochondrial transcription termination factor family protein
           [Arabidopsis thaliana]
           gi|13878065|gb|AAK44110.1|AF370295_1 unknown protein
           [Arabidopsis thaliana] gi|6562304|emb|CAB62602.1|
           putative protein [Arabidopsis thaliana]
           gi|10176724|dbj|BAB09954.1| unnamed protein product
           [Arabidopsis thaliana] gi|17104655|gb|AAL34216.1|
           unknown protein [Arabidopsis thaliana]
           gi|21592327|gb|AAM64278.1| unknown [Arabidopsis
           thaliana] gi|332003836|gb|AED91219.1| Mitochondrial
           transcription termination factor family protein
           [Arabidopsis thaliana]
          Length = 405

 Score =  279 bits (713), Expect = 6e-73
 Identities = 131/218 (60%), Positives = 164/218 (75%)
 Frame = +1

Query: 1   LKSNEKVVAATRRTTWIFLEDYTKNLEPNIVVLRGVGVPESCIILLLTHFPEAVMLKHDR 180
           L S+EK+VAA RRTTW+FLED+TKNL PNI  +   GVPE CI LLLTHFPEAVM K+  
Sbjct: 184 LDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHE 243

Query: 181 FKETVAKVKGMGFDPMKSQFVLAVHVFSGEGNKSIWDRCCEVYKNWGWSEDDILMAFRKQ 360
           F+    + + MGF+P KS FVLA+H  SG+GNKSIWD+C EVY+ WGWSEDDI+ AF+K 
Sbjct: 244 FQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKH 303

Query: 361 PNCMILSEKKITKAMDFLVNKMGWPSRVIASCPAVLLFSLEKRIIPRCYVIQALSVKDLI 540
           P+CM+LSE+KI + M++ VN+M    R IA CP VL FSLEKRIIPRC V + L    L+
Sbjct: 304 PHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLV 363

Query: 541 KKDVSLLTVMIPAEKYFLERFVTKYEEELPQLWGVYQG 654
           K+D SL ++++P EK FLE+ V KYEEELP+L  +Y G
Sbjct: 364 KEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMNLYLG 401


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