BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00036382
         (524 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004173875.1| PREDICTED: DNA-directed RNA polymerase subun...   160   2e-53
ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatu...   155   1e-50
ref|XP_003590535.1| 30S ribosomal protein S11 [Medicago truncatu...   143   3e-47
ref|YP_086997.1| RNA polymerase alpha subunit [Panax ginseng] gi...   177   6e-43
ref|YP_004935584.1| RNA polymerase alpha subunit (chloroplast) [...   175   3e-42

>ref|XP_004173875.1| PREDICTED: DNA-directed RNA polymerase subunit alpha-like [Cucumis
           sativus]
          Length = 466

 Score =  160 bits (405), Expect(2) = 2e-53
 Identities = 80/103 (77%), Positives = 87/103 (84%)
 Frame = -2

Query: 310 QEKVRVSTRTLQWKCVEARADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCI 131
           ++K+RVSTRTL+WKCVE+RADSKRLYYGRFILSPLMKGQ DTIGIAMR+ALLGEIEGTCI
Sbjct: 136 RQKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGTCI 195

Query: 130 TRAKSEKIPHEYSTLVGIQESVHXXXXXXXXXXXXXXLYGTCD 2
           TRAKSEKIPHEYST+VGIQESVH              LYGT D
Sbjct: 196 TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRD 238



 Score = 73.9 bits (180), Expect(2) = 2e-53
 Identities = 33/35 (94%), Positives = 35/35 (100%)
 Frame = -3

Query: 522 KGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 418
           KGPGLGRDAALRAIRRSGILL+F+RDVTPMPHNGC
Sbjct: 96  KGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGC 130


>ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatula]
           gi|355507111|gb|AES88253.1| 30S ribosomal protein S11
           [Medicago truncatula]
          Length = 466

 Score =  155 bits (393), Expect(2) = 1e-50
 Identities = 78/103 (75%), Positives = 84/103 (81%)
 Frame = -2

Query: 310 QEKVRVSTRTLQWKCVEARADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCI 131
           ++KV+VS RTLQWKCVE+R DSKRLYYGRFILSPL KGQADTIGIAMRR LLGEIEGTCI
Sbjct: 136 RQKVKVSARTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCI 195

Query: 130 TRAKSEKIPHEYSTLVGIQESVHXXXXXXXXXXXXXXLYGTCD 2
           TRAKSEKIPHEYST+VGIQES+H              LYGT D
Sbjct: 196 TRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRD 238



 Score = 69.3 bits (168), Expect(2) = 1e-50
 Identities = 31/35 (88%), Positives = 33/35 (94%)
 Frame = -3

Query: 522 KGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 418
           KGPGLGRDAALRAI RSGILL F+RDVTP+PHNGC
Sbjct: 96  KGPGLGRDAALRAIARSGILLRFIRDVTPIPHNGC 130


>ref|XP_003590535.1| 30S ribosomal protein S11 [Medicago truncatula]
           gi|355479583|gb|AES60786.1| 30S ribosomal protein S11
           [Medicago truncatula]
          Length = 233

 Score =  143 bits (360), Expect(2) = 3e-47
 Identities = 72/103 (69%), Positives = 80/103 (77%)
 Frame = -2

Query: 310 QEKVRVSTRTLQWKCVEARADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCI 131
           ++KV+VSTRTLQWKCVE+R DSK LYYGRFIL+PL K QA  IGIAMRR L GEIEGTCI
Sbjct: 71  RQKVKVSTRTLQWKCVESRVDSKCLYYGRFILTPLRKDQAHIIGIAMRRILFGEIEGTCI 130

Query: 130 TRAKSEKIPHEYSTLVGIQESVHXXXXXXXXXXXXXXLYGTCD 2
           TRAKSEKIPHEYST++GIQES+H              LYGT D
Sbjct: 131 TRAKSEKIPHEYSTILGIQESIHEILMNLKENILKSNLYGTRD 173



 Score = 70.5 bits (171), Expect(2) = 3e-47
 Identities = 32/35 (91%), Positives = 33/35 (94%)
 Frame = -3

Query: 522 KGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 418
           KGPGLGRDAALRAIRRSGILL F+ DVTPMPHNGC
Sbjct: 31  KGPGLGRDAALRAIRRSGILLRFIGDVTPMPHNGC 65


>ref|YP_086997.1| RNA polymerase alpha subunit [Panax ginseng]
           gi|68053096|sp|Q68RX5.1|RPOA_PANGI RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|51235344|gb|AAT98540.1| RNA polymerase alpha subunit
           [Panax ginseng]
          Length = 353

 Score =  177 bits (450), Expect = 6e-43
 Identities = 91/105 (86%), Positives = 91/105 (86%)
 Frame = -2

Query: 316 MVQEKVRVSTRTLQWKCVEARADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 137
           MVQEKVRVSTRTLQWKCVEARADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVQEKVRVSTRTLQWKCVEARADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 136 CITRAKSEKIPHEYSTLVGIQESVHXXXXXXXXXXXXXXLYGTCD 2
           CITRAKSEKIPHEYSTLVGIQESVH              LYGTCD
Sbjct: 61  CITRAKSEKIPHEYSTLVGIQESVHEILMNLKEIILKSNLYGTCD 105


>ref|YP_004935584.1| RNA polymerase alpha subunit (chloroplast) [Eleutherococcus
           senticosus] gi|347448239|gb|AEO92651.1| RNA polymerase
           alpha subunit (chloroplast) [Eleutherococcus senticosus]
          Length = 353

 Score =  175 bits (444), Expect = 3e-42
 Identities = 89/105 (84%), Positives = 91/105 (86%)
 Frame = -2

Query: 316 MVQEKVRVSTRTLQWKCVEARADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 137
           MV+EKVRVSTRTLQWKCVEARADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1   MVREKVRVSTRTLQWKCVEARADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGELEGT 60

Query: 136 CITRAKSEKIPHEYSTLVGIQESVHXXXXXXXXXXXXXXLYGTCD 2
           CITRAKSEKIPHEYSTLVGIQESVH              LYGTCD
Sbjct: 61  CITRAKSEKIPHEYSTLVGIQESVHEILMNLKEIILRSNLYGTCD 105