BLASTX nr result

ID: Panax21_contig00036241 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00036241
         (1056 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001109497.1| hypothetical protein Poptr_cp018 [Populus tr...   160   6e-37
gb|AFK34406.1| unknown [Lotus japonicus]                              133   6e-29
ref|XP_002888350.1| predicted protein [Arabidopsis lyrata subsp....   128   3e-27
pir||T08999 hypothetical protein - spinach chloroplast                127   6e-27
ref|XP_004174110.1| PREDICTED: photosystem II reaction center pr...   121   3e-25

>ref|YP_001109497.1| hypothetical protein Poptr_cp018 [Populus trichocarpa]
           gi|133712057|gb|ABO36700.1| conserved hypothetical
           protein [Populus trichocarpa]
          Length = 113

 Score =  160 bits (404), Expect = 6e-37
 Identities = 86/115 (74%), Positives = 90/115 (78%)
 Frame = +1

Query: 46  LTTEKNSGGGSFGFWIWDE*VQEMRELRIPTRKTNPIHNDVPENKTFLLLDQPSGEANTT 225
           L T KN G G F F IW   VQEMRELRIPTRKTNPIHNDVPEN TFLLLDQPSGE  TT
Sbjct: 3   LATLKNWGRGLFHFCIW---VQEMRELRIPTRKTNPIHNDVPENTTFLLLDQPSGEEKTT 59

Query: 226 GTPINKINDVAINAKTANWKARVMLLILQATNK*TIPFDP*KLY*NTLHHTGILP 390
           GT INKI++VAINAKTANWKA VM LILQATNK TIPFDP  +     HH GI+P
Sbjct: 60  GTLINKIDEVAINAKTANWKAIVMFLILQATNKRTIPFDP-SIRQKKTHHGGIIP 113


>gb|AFK34406.1| unknown [Lotus japonicus]
          Length = 80

 Score =  133 bits (335), Expect = 6e-29
 Identities = 66/77 (85%), Positives = 69/77 (89%)
 Frame = +1

Query: 115 MRELRIPTRKTNPIHNDVPENKTFLLLDQPSGEANTTGTPINKINDVAINAKTANWKARV 294
           MRELRIPTR TN IHNDVPEN TFLLLDQPSGEANTTGT INK+N+VAINAKTANWKA V
Sbjct: 1   MRELRIPTRNTNAIHNDVPENTTFLLLDQPSGEANTTGTLINKMNEVAINAKTANWKAIV 60

Query: 295 MLLILQATNK*TIPFDP 345
           + LILQ TNK TIPFDP
Sbjct: 61  IFLILQITNKRTIPFDP 77


>ref|XP_002888350.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297334191|gb|EFH64609.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 76

 Score =  128 bits (321), Expect = 3e-27
 Identities = 64/71 (90%), Positives = 68/71 (95%)
 Frame = -2

Query: 323 LLVAWRIKSMTLAFQLAVFALIATSLILLIGVPVVFASPDGWSSNKNVLFSGTSLWIGLV 144
           LL+AWRIK+MT+AFQLAVFALI TS ILLI VPVVFASPDGWSSNKNV+FSGTSLWIGLV
Sbjct: 6   LLIAWRIKNMTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLV 65

Query: 143 FLVGILNSLIS 111
           FLVGILNSLIS
Sbjct: 66  FLVGILNSLIS 76


>pir||T08999 hypothetical protein - spinach chloroplast
          Length = 90

 Score =  127 bits (318), Expect = 6e-27
 Identities = 63/77 (81%), Positives = 68/77 (88%)
 Frame = +1

Query: 115 MRELRIPTRKTNPIHNDVPENKTFLLLDQPSGEANTTGTPINKINDVAINAKTANWKARV 294
           MRELRIPTRKTNP HNDVPEN  FLLLDQPSGEANTTGT I+KI++VAINAKTANWKA V
Sbjct: 1   MRELRIPTRKTNPSHNDVPENTIFLLLDQPSGEANTTGTLISKIDEVAINAKTANWKAIV 60

Query: 295 MLLILQATNK*TIPFDP 345
           + +ILQA  K TIPFDP
Sbjct: 61  IRIILQAIKKQTIPFDP 77


>ref|XP_004174110.1| PREDICTED: photosystem II reaction center protein Z-like [Cucumis
           sativus]
          Length = 76

 Score =  121 bits (304), Expect = 3e-25
 Identities = 61/71 (85%), Positives = 65/71 (91%)
 Frame = -2

Query: 323 LLVAWRIKSMTLAFQLAVFALIATSLILLIGVPVVFASPDGWSSNKNVLFSGTSLWIGLV 144
           LLV WRI++MT+AFQLAVFALI TS ILLI VPVVFASPDGWS NK V+FSGTSLWIGLV
Sbjct: 6   LLVDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKKVVFSGTSLWIGLV 65

Query: 143 FLVGILNSLIS 111
           FLVGILNSLIS
Sbjct: 66  FLVGILNSLIS 76


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