BLASTX nr result

ID: Panax21_contig00036127 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00036127
         (454 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271735.2| PREDICTED: uncharacterized protein LOC100254...   155   4e-36
emb|CBI32346.3| unnamed protein product [Vitis vinifera]              155   4e-36
ref|XP_004158628.1| PREDICTED: mediator of RNA polymerase II tra...   154   5e-36
ref|XP_004140216.1| PREDICTED: mediator of RNA polymerase II tra...   154   5e-36
ref|XP_002277484.1| PREDICTED: uncharacterized protein LOC100247...   153   1e-35

>ref|XP_002271735.2| PREDICTED: uncharacterized protein LOC100254459 [Vitis vinifera]
          Length = 1321

 Score =  155 bits (391), Expect = 4e-36
 Identities = 76/107 (71%), Positives = 86/107 (80%)
 Frame = +3

Query: 132 QQSMWDGVLELTKSAQDRATDPLTWALQLSSSLMSAGVSLPSTEAAKFIVNHICWENNVP 311
           Q  +WD VLELTKSAQ+R +DPL WA+QLSS L SAG SLPS E A  +V+HICW NNVP
Sbjct: 16  QPGLWDSVLELTKSAQERNSDPLLWAVQLSSILNSAGTSLPSPELAHLLVSHICWANNVP 75

Query: 312 IMWKFLEMALAMKIVPPMLVLALLSVRVIPRRRSQPAAYRIYMELLK 452
           I WKFLE A++ +I PPMLVLALLS RVIP RR  PAAYR+YMELLK
Sbjct: 76  ITWKFLEKAVSGRIAPPMLVLALLSSRVIPNRRLYPAAYRLYMELLK 122


>emb|CBI32346.3| unnamed protein product [Vitis vinifera]
          Length = 1388

 Score =  155 bits (391), Expect = 4e-36
 Identities = 76/107 (71%), Positives = 86/107 (80%)
 Frame = +3

Query: 132 QQSMWDGVLELTKSAQDRATDPLTWALQLSSSLMSAGVSLPSTEAAKFIVNHICWENNVP 311
           Q  +WD VLELTKSAQ+R +DPL WA+QLSS L SAG SLPS E A  +V+HICW NNVP
Sbjct: 67  QPGLWDSVLELTKSAQERNSDPLLWAVQLSSILNSAGTSLPSPELAHLLVSHICWANNVP 126

Query: 312 IMWKFLEMALAMKIVPPMLVLALLSVRVIPRRRSQPAAYRIYMELLK 452
           I WKFLE A++ +I PPMLVLALLS RVIP RR  PAAYR+YMELLK
Sbjct: 127 ITWKFLEKAVSGRIAPPMLVLALLSSRVIPNRRLYPAAYRLYMELLK 173


>ref|XP_004158628.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           33B-like [Cucumis sativus]
          Length = 739

 Score =  154 bits (390), Expect = 5e-36
 Identities = 72/103 (69%), Positives = 88/103 (85%)
 Frame = +3

Query: 141 MWDGVLELTKSAQDRATDPLTWALQLSSSLMSAGVSLPSTEAAKFIVNHICWENNVPIMW 320
           +WD VLELTKSAQD+  DPL WA+QLSS+L SAGVSLPS E A+ +V+HICW+N+VPIMW
Sbjct: 17  LWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVELAQLLVSHICWDNHVPIMW 76

Query: 321 KFLEMALAMKIVPPMLVLALLSVRVIPRRRSQPAAYRIYMELL 449
           KFLE A+  +IVPP+LV+ALLS R IP R+ QPAAYR+Y+ELL
Sbjct: 77  KFLEKAMTARIVPPLLVIALLSTRAIPYRKLQPAAYRLYLELL 119


>ref|XP_004140216.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           33A-like [Cucumis sativus]
          Length = 1335

 Score =  154 bits (390), Expect = 5e-36
 Identities = 72/103 (69%), Positives = 88/103 (85%)
 Frame = +3

Query: 141 MWDGVLELTKSAQDRATDPLTWALQLSSSLMSAGVSLPSTEAAKFIVNHICWENNVPIMW 320
           +WD VLELTKSAQD+  DPL WA+QLSS+L SAGVSLPS E A+ +V+HICW+N+VPIMW
Sbjct: 17  LWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVELAQLLVSHICWDNHVPIMW 76

Query: 321 KFLEMALAMKIVPPMLVLALLSVRVIPRRRSQPAAYRIYMELL 449
           KFLE A+  +IVPP+LV+ALLS R IP R+ QPAAYR+Y+ELL
Sbjct: 77  KFLEKAMTARIVPPLLVIALLSTRAIPYRKLQPAAYRLYLELL 119


>ref|XP_002277484.1| PREDICTED: uncharacterized protein LOC100247741 [Vitis vinifera]
           gi|297736973|emb|CBI26174.3| unnamed protein product
           [Vitis vinifera]
          Length = 1305

 Score =  153 bits (387), Expect = 1e-35
 Identities = 76/114 (66%), Positives = 90/114 (78%)
 Frame = +3

Query: 111 MAVNVQQQQSMWDGVLELTKSAQDRATDPLTWALQLSSSLMSAGVSLPSTEAAKFIVNHI 290
           MAV+V    S+WD +LE T  AQ++ +DPL WA+QLSSSL SAGVSLPS E A  +V+HI
Sbjct: 1   MAVSVHT--SIWDNILEHTNVAQEKGSDPLLWAVQLSSSLSSAGVSLPSVEVANLLVSHI 58

Query: 291 CWENNVPIMWKFLEMALAMKIVPPMLVLALLSVRVIPRRRSQPAAYRIYMELLK 452
           CW NNVPI WKFLE AL +KIVPPM VLALLS RVIP R S+P AYR+Y+EL+K
Sbjct: 59  CWGNNVPIAWKFLEKALMIKIVPPMPVLALLSTRVIPSRHSRPTAYRLYLELIK 112


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