BLASTX nr result

ID: Panax21_contig00035533 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00035533
         (350 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002304021.1| predicted protein [Populus trichocarpa] gi|2...   112   4e-23
ref|XP_002297659.1| predicted protein [Populus trichocarpa] gi|2...   107   1e-21
gb|ACJ02343.1| U-box domain-containing protein [Helianthus annuus]    104   7e-21
ref|XP_002283306.1| PREDICTED: putative E3 ubiquitin-protein lig...   103   1e-20
emb|CAN71223.1| hypothetical protein VITISV_011730 [Vitis vinifera]   103   1e-20

>ref|XP_002304021.1| predicted protein [Populus trichocarpa] gi|222841453|gb|EEE79000.1|
           predicted protein [Populus trichocarpa]
          Length = 1159

 Score =  112 bits (279), Expect = 4e-23
 Identities = 59/115 (51%), Positives = 76/115 (66%)
 Frame = +3

Query: 3   TLKRLAKSFFEMQQSEECVDDINSTLLLQYEDARYPNLLPTQLRLFYKGFDGNYDYFDGR 182
           TLK LAKS F++Q++E+  D       L   D  +P           +G +G+++ FD  
Sbjct: 630 TLKTLAKSVFKIQRTEDSGD-------LTVSDLLHPKKA-INASASIEGLNGSHESFDEG 681

Query: 183 PSFLSIPQDFICPLSGQFFEDPVTLETGQTFESAAIAEWFNKGHKTCPLTGKTLE 347
             F SIPQDF+CPL+ Q FEDPVTLETGQTFE  AI +WFN+G++TCPLTGKTLE
Sbjct: 682 SIFESIPQDFVCPLTRQLFEDPVTLETGQTFEREAIRKWFNQGNRTCPLTGKTLE 736


>ref|XP_002297659.1| predicted protein [Populus trichocarpa] gi|222844917|gb|EEE82464.1|
           predicted protein [Populus trichocarpa]
          Length = 760

 Score =  107 bits (266), Expect = 1e-21
 Identities = 58/117 (49%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
 Frame = +3

Query: 6   LKRLAKSFFEMQQSEEC----VDDINSTLLLQYEDARYPNLLPTQLRLFYKGFDGNYDYF 173
           LK LAKS FE+Q++E+     V D++ +      DA              +G +G++++F
Sbjct: 632 LKTLAKSVFELQRTEDSGDPTVSDLSHSKKAINADASS------------EGPNGSHEHF 679

Query: 174 DGRPSFLSIPQDFICPLSGQFFEDPVTLETGQTFESAAIAEWFNKGHKTCPLTGKTL 344
           D    F SIP DFICPL+GQ FEDPVTLETGQTFE  AI EWF++G+KTCP++GKTL
Sbjct: 680 DEGSIFDSIPHDFICPLTGQLFEDPVTLETGQTFEREAIREWFDQGNKTCPVSGKTL 736


>gb|ACJ02343.1| U-box domain-containing protein [Helianthus annuus]
          Length = 1050

 Score =  104 bits (260), Expect = 7e-21
 Identities = 55/116 (47%), Positives = 72/116 (62%)
 Frame = +3

Query: 3   TLKRLAKSFFEMQQSEECVDDINSTLLLQYEDARYPNLLPTQLRLFYKGFDGNYDYFDGR 182
           TLKRLAK  F +QQ+E           L  +  ++P+  P +               DG 
Sbjct: 581 TLKRLAKFVFGLQQTEN---------QLHLDVTKHPDSSPIKSNA------------DGE 619

Query: 183 PSFLSIPQDFICPLSGQFFEDPVTLETGQTFESAAIAEWFNKGHKTCPLTGKTLEH 350
             FL+IP+D++CPL+G  FEDPVTLETGQT+E  AI EWF+KG+KTCP+TGKTLE+
Sbjct: 620 HFFLNIPEDYMCPLTGHIFEDPVTLETGQTYERVAIMEWFSKGNKTCPVTGKTLEY 675


>ref|XP_002283306.1| PREDICTED: putative E3 ubiquitin-protein ligase LIN-1-like [Vitis
           vinifera]
          Length = 1148

 Score =  103 bits (257), Expect = 1e-20
 Identities = 56/115 (48%), Positives = 71/115 (61%)
 Frame = +3

Query: 3   TLKRLAKSFFEMQQSEECVDDINSTLLLQYEDARYPNLLPTQLRLFYKGFDGNYDYFDGR 182
           TL+ LA+S F++  S +     NS  +        PN   T +    K   GN  YF+  
Sbjct: 619 TLRTLARSVFDLHISSQS----NSEAIFD------PN--QTNMESSAKDLHGNCQYFNEG 666

Query: 183 PSFLSIPQDFICPLSGQFFEDPVTLETGQTFESAAIAEWFNKGHKTCPLTGKTLE 347
             F SIPQDFICPL+G+ FEDPVT+ETGQTFE  AI EWFN+G++ CP+TGK LE
Sbjct: 667 SFFSSIPQDFICPLTGRLFEDPVTIETGQTFERHAIREWFNQGNRNCPVTGKALE 721


>emb|CAN71223.1| hypothetical protein VITISV_011730 [Vitis vinifera]
          Length = 1148

 Score =  103 bits (257), Expect = 1e-20
 Identities = 56/115 (48%), Positives = 71/115 (61%)
 Frame = +3

Query: 3   TLKRLAKSFFEMQQSEECVDDINSTLLLQYEDARYPNLLPTQLRLFYKGFDGNYDYFDGR 182
           TL+ LA+S F++  S +     NS  +        PN   T +    K   GN  YF+  
Sbjct: 619 TLRTLARSVFDLHISSQS----NSEAIFD------PN--QTNMESSAKDLHGNCQYFNEG 666

Query: 183 PSFLSIPQDFICPLSGQFFEDPVTLETGQTFESAAIAEWFNKGHKTCPLTGKTLE 347
             F SIPQDFICPL+G+ FEDPVT+ETGQTFE  AI EWFN+G++ CP+TGK LE
Sbjct: 667 SFFSSIPQDFICPLTGRLFEDPVTIETGQTFERHAIREWFNQGNRNCPVTGKALE 721


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